Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

24695637 .. 24698914

Gene Structure 3278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCAGACGCTTTGAATATGACTCTTGATGAAATTGTGAAGAAGAGTAAGAGTGAAAGGTCTGCAGCTGCAAGGTCTGGAGGTAAAGGAGTTTCCCGTAAGAGTGGACGTGGACGTGGTGGACCTAATGGTGTTGTAGGAGGTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTAATACTCGGCCATCATCATCCTTCTCCATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGCCATGGCAGAATCAGAATGATTTGTATGAAGAAACCCTTAGAGCTGTTGGGGTATCAGGAGTGGAAGTCGGAACCACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAATGAAGATATAAGGGAACTCTATGCTGAAATTGGAGAGCTGAAAAGATATGCAATTCACTATGACAAAAATGGGCGTCCAAGTGGATCGGCTGAAGTTGTGTATATGAGAAGAAGTGATGCAATTCAAGCTATGAGGAAATACAATAATGTACTTTTGGATGGAAGGCCTATGAAACTGGAGATTCTGGGTGGAAATACTGAATCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGGATTGAATGGAAGGATGAAGAGGAGTGTCTTCATTGGACAAGGAGTTAGAGGTGGGAGAGTAGGAAGAGGAAGAGGTTCAGGTCCTTCTGGGAGACGCCTTCCACTCCAACAAAACCAACAAGGTGGTGTGACAGCTGGTCGAGGCGGGTTCCGTGGTAGAGGCCGGGGTAATGGTGGTGGCAGAGGGAATAAAAGCGGTGGGCGAGGTGGAAAGAAGCCAGTGGAGAAGTCTGCTGCGGATCTCGACAAAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

295

Amino Acids

31.32

Weight (kDa)

10.92

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	109 - 177	7.3e-12	RNA recognition motif
FoP_duplication	PF13865	236 - 289	1.3e-06	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	229, 741, 792, 833
AclWI	GGATC	2 cut(s)	451, 843
AcoI	YGGCCR	1 cut(s)	194
AcuI	CTGAAG	2 cut(s)	471, 888
AcyI	GRCGYC	2 cut(s)	433, 691
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	16, 485, 601
AhdI	GACNNNNNGTC	1 cut(s)	732
AjiI	CACGTC	2 cut(s)	110, 116
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	451, 843
AoxI	GGCC	3 cut(s)	194, 524, 757
ApeKI	GCWGC	4 cut(s)	65, 68, 575, 830
Asp700I	GAANNNNTTC	1 cut(s)	670
AspS9I	GGNCC	4 cut(s)	122, 158, 173, 677
AsuC2I	CCSGG	1 cut(s)	761
AvaII	GGWCC	4 cut(s)	122, 158, 173, 677
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	616
BbvI	GCAGC	4 cut(s)	55, 77, 587, 817
BccI	CCATC	2 cut(s)	205, 512
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	682
BfmI	CTRYAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	4 cut(s)	66, 69, 576, 831
BlsI	GCNGC	4 cut(s)	67, 70, 577, 832
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	4 cut(s)	122, 158, 173, 677
BmeRI	GACNNNNNGTC	1 cut(s)	732
BmgBI	CACGTC	2 cut(s)	110, 116
BmgT120I	GGNCC	4 cut(s)	122, 158, 173, 677
BmiI	GGNNCC	2 cut(s)	319, 746
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	616
BpmI	CTGGAG	2 cut(s)	99, 557
BpuMI	CCSGG	1 cut(s)	761
BsaHI	GRCGYC	2 cut(s)	433, 691
BsaJI	CCNNGG	3 cut(s)	248, 748, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	3 cut(s)	540, 598, 815
BseDI	CCNNGG	3 cut(s)	248, 748, 760
BseGI	GGATG	3 cut(s)	203, 523, 615
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseNI	ACTGG	3 cut(s)	540, 598, 815
BseRI	GAGGAG	3 cut(s)	165, 253, 631
BseXI	GCAGC	4 cut(s)	55, 77, 587, 817
BshFI	GGCC	3 cut(s)	196, 526, 759
BsiSI	CCGG	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	682
BsmBI	CGTCTC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	196, 526, 759
Bsp143I	GATC	4 cut(s)	343, 443, 835, 847
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	4 cut(s)	229, 741, 792, 833
BspANI	GGCC	3 cut(s)	196, 526, 759
BspLI	GGNNCC	2 cut(s)	319, 746
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	451, 843
BsrI	ACTGG	3 cut(s)	540, 598, 815
BssECI	CCNNGG	3 cut(s)	248, 748, 760
BssMI	GATC	4 cut(s)	343, 443, 835, 847
BssNI	GRCGYC	2 cut(s)	433, 691
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	6 cut(s)	38, 142, 230, 608, 655, 661
BstACI	GRCGYC	2 cut(s)	433, 691
BstC8I	GCNNGC	3 cut(s)	225, 229, 245
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	2 cut(s)	248, 748
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	3 cut(s)	203, 523, 615
BstKTI	GATC	4 cut(s)	346, 446, 838, 850
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	4 cut(s)	343, 443, 835, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 572
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	55, 77, 587, 817
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	2 cut(s)	835, 847
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	2 cut(s)	835, 847
BsuRI	GGCC	3 cut(s)	196, 526, 759
BtgI	CCRYGG	2 cut(s)	248, 748
BtrI	CACGTC	2 cut(s)	110, 116
BtsCI	GGATG	3 cut(s)	203, 523, 615
BtsIMutI	CAGTG	1 cut(s)	822
Cac8I	GCNNGC	3 cut(s)	225, 229, 245
Cfr13I	GGNCC	4 cut(s)	122, 158, 173, 677
CseI	GACGC	3 cut(s)	17, 422, 699
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	2 cut(s)	249, 863
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	4 cut(s)	345, 445, 837, 849
DpnII	GATC	4 cut(s)	343, 443, 835, 847
DriI	GACNNNNNGTC	1 cut(s)	732
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	6 cut(s)	38, 142, 230, 608, 655, 661
Eam1105I	GACNNNNNGTC	1 cut(s)	732
EarI	CTCTTC	6 cut(s)	38, 142, 230, 608, 655, 661
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	526
Eco47I	GGWCC	4 cut(s)	122, 158, 173, 677
Eco57I	CTGAAG	2 cut(s)	471, 888
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	173, 677
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	2 cut(s)	252, 866
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 267, 299
FatI	CATG	2 cut(s)	248, 862
FauI	CCCGC	2 cut(s)	236, 734
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	66, 69, 576, 831
FokI	GGATG	3 cut(s)	190, 530, 622
Fsp4HI	GCNGC	4 cut(s)	66, 69, 576, 831
GluI	GCNGC	4 cut(s)	66, 69, 576, 831
GsuI	CTGGAG	2 cut(s)	99, 557
HaeIII	GGCC	3 cut(s)	196, 526, 759
HapII	CCGG	1 cut(s)	760
HgaI	GACGC	3 cut(s)	17, 422, 699
Hin1I	GRCGYC	2 cut(s)	433, 691
Hin1II	CATG	2 cut(s)	252, 866
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	4 cut(s)	22, 256, 541, 560
HpaII	CCGG	1 cut(s)	760
Hpy166II	GTNNAC	4 cut(s)	107, 113, 122, 158
Hpy188I	TCNGA	3 cut(s)	7, 261, 317
Hpy188III	TCNNGA	5 cut(s)	26, 78, 303, 839, 851
Hpy8I	GTNNAC	4 cut(s)	107, 113, 122, 158
HpyAV	CCTTC	5 cut(s)	217, 516, 600, 690, 704
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	109, 115
HpyCH4V	TGCA	4 cut(s)	65, 71, 410, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 572
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	2 cut(s)	109, 115
Hsp92I	GRCGYC	2 cut(s)	433, 691
Hsp92II	CATG	2 cut(s)	252, 866
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	343, 443, 835, 847
LmnI	GCTCC	2 cut(s)	240, 571
Lsp1109I	GCAGC	4 cut(s)	55, 77, 587, 817
LweI	GCATC	1 cut(s)	466
MaeII	ACGT	2 cut(s)	109, 115
MaeIII	GTNAC	3 cut(s)	352, 589, 724
MalI	GATC	4 cut(s)	345, 445, 837, 849
MboI	GATC	4 cut(s)	343, 443, 835, 847
MflI	RGATCY	2 cut(s)	835, 847
MluCI	AATT	4 cut(s)	33, 387, 411, 480
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	295, 727
MroXI	GAANNNNTTC	1 cut(s)	670
MseI	TTAA	3 cut(s)	186, 585, 886
MspA1I	CMGCKG	2 cut(s)	68, 731
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	2 cut(s)	485, 572
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	4 cut(s)	343, 443, 835, 847
NlaIII	CATG	2 cut(s)	252, 866
NlaIV	GGNNCC	2 cut(s)	319, 746
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	3 cut(s)	352, 589, 724
PceI	AGGCCT	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	256, 541, 560
PkrI	GCNGC	4 cut(s)	67, 70, 577, 832
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	2 cut(s)	173, 677
Psp5II	RGGWCCY	2 cut(s)	173, 677
PspN4I	GGNNCC	2 cut(s)	319, 746
PspPI	GGNCC	4 cut(s)	122, 158, 173, 677
PspPPI	RGGWCCY	2 cut(s)	173, 677
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	835, 847
PvuII	CAGCTG	2 cut(s)	68, 731
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	186, 585, 886
SatI	GCNGC	4 cut(s)	66, 69, 576, 831
Sau3AI	GATC	4 cut(s)	343, 443, 835, 847
Sau96I	GGNCC	4 cut(s)	122, 158, 173, 677
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	4 cut(s)	122, 158, 173, 677
Sse9I	AATT	4 cut(s)	33, 387, 411, 480
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	4 cut(s)	229, 741, 792, 833
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	112, 118
TaqI	TCGA	3 cut(s)	736, 840, 852
TasI	AATT	4 cut(s)	33, 387, 411, 480
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	3 cut(s)	256, 541, 560
Tru1I	TTAA	3 cut(s)	186, 585, 886
Tru9I	TTAA	3 cut(s)	186, 585, 886
TscAI	CASTG	1 cut(s)	822
TseFI	GTSAC	3 cut(s)	352, 589, 724
TseI	GCWGC	4 cut(s)	65, 68, 575, 830
Tsp45I	GTSAC	3 cut(s)	352, 589, 724
TspDTI	ATGAA	6 cut(s)	45, 288, 375, 545, 616, 626
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	1 cut(s)	822
VpaK11BI	GGWCC	4 cut(s)	122, 158, 173, 677
XagI	CCTNNNNNAGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.