Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006010.1

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

30316 .. 33875

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006010.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgattagtaccatcctccagaatattgcaggctcagctgaagtggtttataccagaagaagtgacgcatttgcagcattgaaacgctataataatgtcctattggatgggaagcctatgaagatcgagattgttggtgccaatgagggaatgccaatttctgcacgtgtcaatgtgacaggagtacaaggaagaaagaagaggacagttgtaatgacgcccagacctggtcatgctggtggctatgctttgcctgcggttaatcgtggtcctggcccttctaggagttctcgtggagggatcaggaatggccgtggaattccacgtggtcgtggtcgtggccgtgggcgtgggcgtgggcatggacaaggacctgagaggaagaaacctgttgacaagtcagttgatgaacttgacaaggaacttgatagctatcatgcagaagccatgcaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

152

Amino Acids

16.33

Weight (kDa)

11.07

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	2 cut(s)	310, 340
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	60
AcvI	CACGTG	2 cut(s)	167, 326
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	10, 186
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	226, 271
AluBI	AGCT	2 cut(s)	38, 432
AluI	AGCT	2 cut(s)	38, 432
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	3 cut(s)	274, 310, 340
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	318
AspS9I	GGNCC	3 cut(s)	269, 275, 371
AvaII	GGWCC	2 cut(s)	269, 371
BanI	GGYRCC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	291
BbrPI	CACGTG	2 cut(s)	167, 326
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	20, 101
BceAI	ACGGC	2 cut(s)	297, 327
BciT130I	CCWGG	2 cut(s)	228, 273
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	228, 273
Bme18I	GGWCC	2 cut(s)	269, 371
BmgT120I	GGNCC	3 cut(s)	269, 275, 371
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	228, 273
Bpu1102I	GCTNAGC	1 cut(s)	34
BsaAI	YACGTR	2 cut(s)	167, 326
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	313, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	228, 273
BseDI	CCNNGG	2 cut(s)	313, 343
BseGI	GGATG	2 cut(s)	12, 112
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	48, 366
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	276, 312, 342
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	3 cut(s)	276, 312, 342
Bsp143I	GATC	2 cut(s)	123, 300
Bsp1720I	GCTNAGC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	276, 312, 342
BspCNI	CTCAG	2 cut(s)	47, 367
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	313, 343
BssMI	GATC	2 cut(s)	123, 300
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	228, 273
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	218
BstBAI	YACGTR	2 cut(s)	167, 326
BstC8I	GCNNGC	2 cut(s)	31, 255
BstDEI	CTNAG	3 cut(s)	34, 375, 456
BstDSI	CCRYGG	2 cut(s)	313, 343
BstF5I	GGATG	2 cut(s)	12, 112
BstKTI	GATC	2 cut(s)	126, 303
BstMBI	GATC	2 cut(s)	123, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 74, 254
BstNI	CCWGG	2 cut(s)	228, 273
BstSCI	CCNGG	2 cut(s)	226, 271
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	276, 312, 342
BtgI	CCRYGG	2 cut(s)	313, 343
BtsCI	GGATG	2 cut(s)	12, 112
Cac8I	GCNNGC	2 cut(s)	31, 255
Cfr13I	GGNCC	3 cut(s)	269, 275, 371
CseI	GACGC	2 cut(s)	74, 226
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	9, 185
CviAII	CATG	4 cut(s)	233, 362, 437, 448
CviJI	RGCY	9 cut(s)	33, 38, 115, 243, 276, 312, 342, 432, 446
CviKI_1	RGCY	9 cut(s)	33, 38, 115, 243, 276, 312, 342, 432, 446
CviQI	GTAC	2 cut(s)	9, 185
DdeI	CTNAG	3 cut(s)	34, 375, 456
DpnI	GATC	2 cut(s)	125, 302
DpnII	GATC	2 cut(s)	123, 300
EaeI	YGGCCR	2 cut(s)	310, 340
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	269, 371
Eco57I	CTGAAG	1 cut(s)	60
Eco72I	CACGTG	2 cut(s)	167, 326
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	226, 271
FaeI	CATG	4 cut(s)	236, 365, 440, 451
FaiI	YATR	8 cut(s)	51, 90, 119, 234, 246, 363, 438, 449
FatI	CATG	4 cut(s)	232, 361, 436, 447
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	276, 312, 342
HgaI	GACGC	2 cut(s)	74, 226
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	236, 365, 440, 451
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188III	TCNNGA	3 cut(s)	19, 127, 304
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	166, 325
HpyCH4V	TGCA	5 cut(s)	29, 74, 164, 440, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 74, 254
HpyF3I	CTNAG	3 cut(s)	34, 375, 456
HpySE526I	ACGT	2 cut(s)	166, 325
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	236, 365, 440, 451
Kzo9I	GATC	2 cut(s)	123, 300
Lsp1109I	GCAGC	1 cut(s)	86
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	166, 325
MaeIII	GTNAC	2 cut(s)	62, 175
MalI	GATC	2 cut(s)	125, 302
MboI	GATC	2 cut(s)	123, 300
MboII	GAAGA	5 cut(s)	69, 133, 204, 211, 394
MluCI	AATT	2 cut(s)	156, 318
MnlI	CCTC	5 cut(s)	26, 139, 195, 290, 372
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	228, 273
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	2 cut(s)	228, 273
MwoI	GCNNNNNNNGC	3 cut(s)	35, 74, 254
NdeII	GATC	2 cut(s)	123, 300
NlaIII	CATG	4 cut(s)	236, 365, 440, 451
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	62, 175
PctI	GAATGC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	76
PmaCI	CACGTG	2 cut(s)	167, 326
PmlI	CACGTG	2 cut(s)	167, 326
Ppu21I	YACGTR	2 cut(s)	167, 326
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	226, 271
PspCI	CACGTG	2 cut(s)	167, 326
PspGI	CCWGG	2 cut(s)	226, 271
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	269, 275, 371
PspPPI	RGGWCCY	1 cut(s)	371
PsyI	GACNNNGTC	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	10, 186
RsaNI	GTAC	2 cut(s)	9, 185
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	123, 300
Sau96I	GGNCC	3 cut(s)	269, 275, 371
ScrFI	CCNGG	2 cut(s)	228, 273
SetI	ASST	7 cut(s)	40, 169, 229, 328, 376, 391, 434
SexAI	ACCWGGT	1 cut(s)	226
SinI	GGWCC	2 cut(s)	269, 371
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	156, 318
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	226, 271
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	169, 328
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	156, 318
TatI	WGTACW	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	62, 175
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	62, 175
TspDTI	ATGAA	2 cut(s)	134, 423
Tth111I	GACNNNGTC	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	269, 371
XapI	RAATTY	1 cut(s)	318
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.