Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

21169934 .. 21176113

Gene Structure 6180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACTACTACTTTGGATATGTCACTTGATGATATGATTAAGAGCAAAAGGGGTGGTAATCGTTATAGAACCAGAGAACGCGGCGGCGGAAGGGGTCCTCGCGGCGGTCGGGGTGGCCGTGGGTCTTTTATTGGTGGAAGAATGGTTCGGAGAGGTCCTCCCCCGGCAGCAATAAATGCTCGACCATCTGCCCACACCATTGCCAAGTCCTTCCGCAGAACCAAGCATTTTCCGTGGCAGCCAGATTTGTTTGAAGAGAGCCTCAGAGCTGCCGGGATTTCAGGGATTGAAATTGGCACAAAATTATATGTGTCCAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGACGCATTTGCAGCATTGAAACGGTATAATAATGTCCTATTGGATGGGAAGCCTATGAAAATCGAGATTGTTGGTGTCAATGAGGGAATGCCAATTTCTGCTCGTGTTAATGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGCTCATGCTGGTGGCTATGCTTTGCCTGCAGTAAATCGTGGTCCTGGCCCTTCTAGGAGCACTCATGGAGGGATCAGGAATGGCCGTGGAATTTCACGTGGGCGTGGGCGTGGGCGTGGGCGTGGGCGTGGACGTGGACAAGGATCTGAGTGGAAGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTGGATACCTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

284

Amino Acids

31.02

Weight (kDa)

10.99

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	114 - 182	4.3e-14	RNA recognition motif
FoP_duplication	PF13865	234 - 290	5.2e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	625
AccII	CGCG	2 cut(s)	81, 102
AciI	CCGC	6 cut(s)	81, 84, 87, 102, 105, 214
AclWI	GGATC	2 cut(s)	698, 769
AcoI	YGGCCR	2 cut(s)	115, 700
AcsI	RAATTY	1 cut(s)	708
AcuI	CTGAAG	2 cut(s)	398, 450
AcvI	CACGTG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	254, 290, 472
AjiI	CACGTC	1 cut(s)	752
AjnI	CCWGG	1 cut(s)	661
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	3 cut(s)	269, 376, 428
AluI	AGCT	3 cut(s)	269, 376, 428
Alw21I	GWGCWC	1 cut(s)	680
AlwI	GGATC	2 cut(s)	698, 769
AoxI	GGCC	3 cut(s)	115, 664, 700
ApeKI	GCWGC	4 cut(s)	167, 238, 269, 464
ApoI	RAATTY	1 cut(s)	708
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	4 cut(s)	95, 155, 659, 665
AsuC2I	CCSGG	2 cut(s)	164, 274
AvaII	GGWCC	3 cut(s)	95, 155, 659
BauI	CACGAG	1 cut(s)	555
BbrPI	CACGTG	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	4 cut(s)	179, 250, 256, 476
BccI	CCATC	2 cut(s)	193, 491
BceAI	ACGGC	2 cut(s)	102, 687
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	164, 274
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	7 cut(s)	82, 85, 103, 168, 239, 270, 465
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	7 cut(s)	83, 86, 104, 169, 240, 271, 466
Bme1390I	CCNGG	3 cut(s)	164, 274, 663
Bme18I	GGWCC	3 cut(s)	95, 155, 659
BmgBI	CACGTC	1 cut(s)	752
BmgT120I	GGNCC	4 cut(s)	95, 155, 659, 665
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	164, 274, 663
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
Bpu1102I	GCTNAGC	1 cut(s)	424
BpuMI	CCSGG	2 cut(s)	164, 274
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	4 cut(s)	118, 162, 233, 703
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	4 cut(s)	118, 162, 233, 703
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	277, 354, 438, 756
BseNI	ACTGG	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	179, 250, 256, 476
Bsh1236I	CGCG	2 cut(s)	81, 102
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	117, 666, 702
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	164, 273
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	117, 666, 702
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	366, 690, 761
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	6 cut(s)	81, 84, 87, 102, 105, 214
BspANI	GGCC	3 cut(s)	117, 666, 702
BspCNI	CTCAG	4 cut(s)	276, 355, 437, 757
BspFNI	CGCG	2 cut(s)	81, 102
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	2 cut(s)	698, 769
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	822
BssECI	CCNNGG	4 cut(s)	118, 162, 233, 703
BssMI	GATC	3 cut(s)	366, 690, 761
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	477, 598
Bst6I	CTCTTC	3 cut(s)	249, 362, 584
BstACI	GRCGYC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	5 cut(s)	263, 363, 424, 765, 849
BstDSI	CCRYGG	3 cut(s)	118, 233, 703
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	2 cut(s)	81, 102
BstKTI	GATC	3 cut(s)	369, 693, 764
BstMBI	GATC	3 cut(s)	366, 690, 761
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 464, 644
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	3 cut(s)	162, 272, 661
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	2 cut(s)	81, 102
BstV1I	GCAGC	4 cut(s)	179, 250, 256, 476
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	3 cut(s)	117, 666, 702
BtgI	CCRYGG	3 cut(s)	118, 233, 703
BtrI	CACGTC	1 cut(s)	752
BtsCI	GGATG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	645
Cfr13I	GGNCC	4 cut(s)	95, 155, 659, 665
CseI	GACGC	2 cut(s)	464, 616
Csp6I	GTAC	1 cut(s)	575
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	4 cut(s)	623, 683, 830, 841
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	5 cut(s)	263, 363, 424, 765, 849
DpnI	GATC	3 cut(s)	368, 692, 763
DpnII	GATC	3 cut(s)	366, 690, 761
EaeI	YGGCCR	2 cut(s)	115, 700
Eam1104I	CTCTTC	3 cut(s)	249, 362, 584
EarI	CTCTTC	3 cut(s)	249, 362, 584
EciI	GGCGGA	1 cut(s)	102
Eco47I	GGWCC	3 cut(s)	95, 155, 659
Eco57I	CTGAAG	2 cut(s)	398, 450
Eco72I	CACGTG	1 cut(s)	716
EcoO109I	RGGNCCY	2 cut(s)	95, 155
EcoRII	CCWGG	1 cut(s)	661
FaeI	CATG	4 cut(s)	626, 686, 833, 844
FatI	CATG	4 cut(s)	622, 682, 829, 840
Fnu4HI	GCNGC	7 cut(s)	82, 85, 103, 168, 239, 270, 465
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	7 cut(s)	82, 85, 103, 168, 239, 270, 465
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	7 cut(s)	82, 85, 103, 168, 239, 270, 465
HaeIII	GGCC	3 cut(s)	117, 666, 702
HapII	CCGG	2 cut(s)	164, 273
HgaI	GACGC	2 cut(s)	464, 616
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	626, 686, 833, 844
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HpaII	CCGG	2 cut(s)	164, 273
Hpy166II	GTNNAC	3 cut(s)	749, 755, 787
Hpy188I	TCNGA	5 cut(s)	150, 266, 364, 371, 766
Hpy188III	TCNNGA	2 cut(s)	517, 694
Hpy8I	GTNNAC	3 cut(s)	749, 755, 787
HpyAV	CCTTC	3 cut(s)	84, 220, 678
HpyCH4III	ACNGT	2 cut(s)	477, 598
HpyCH4IV	ACGT	2 cut(s)	715, 751
HpyCH4V	TGCA	6 cut(s)	322, 389, 464, 647, 833, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 464, 644
HpyF3I	CTNAG	5 cut(s)	263, 363, 424, 765, 849
HpySE526I	ACGT	2 cut(s)	715, 751
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	626, 686, 833, 844
Kzo9I	GATC	3 cut(s)	366, 690, 761
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	4 cut(s)	179, 250, 256, 476
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	715, 751
MaeIII	GTNAC	4 cut(s)	21, 331, 452, 565
MalI	GATC	3 cut(s)	368, 692, 763
MboI	GATC	3 cut(s)	366, 690, 761
MboII	GAAGA	8 cut(s)	150, 266, 349, 459, 594, 601, 784, 787
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	4 cut(s)	291, 302, 546, 708
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	8 cut(s)	108, 146, 168, 272, 334, 529, 585, 680
MseI	TTAA	2 cut(s)	39, 561
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	164, 273
MspR9I	CCNGG	3 cut(s)	164, 274, 663
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	2 cut(s)	81, 102
MwoI	GCNNNNNNNGC	3 cut(s)	176, 464, 644
NciI	CCSGG	2 cut(s)	164, 274
NdeII	GATC	3 cut(s)	366, 690, 761
NlaIII	CATG	4 cut(s)	626, 686, 833, 844
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	4 cut(s)	21, 331, 452, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PctI	GAATGC	1 cut(s)	546
PkrI	GCNGC	7 cut(s)	83, 86, 104, 169, 240, 271, 466
PmaCI	CACGTG	1 cut(s)	716
PmlI	CACGTG	1 cut(s)	716
Ppu21I	YACGTR	1 cut(s)	716
PpuMI	RGGWCCY	2 cut(s)	95, 155
Psp5II	RGGWCCY	2 cut(s)	95, 155
Psp6I	CCWGG	1 cut(s)	661
PspCI	CACGTG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	4 cut(s)	95, 155, 659, 665
PspPPI	RGGWCCY	2 cut(s)	95, 155
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	39, 561
SatI	GCNGC	7 cut(s)	82, 85, 103, 168, 239, 270, 465
Sau3AI	GATC	3 cut(s)	366, 690, 761
Sau96I	GGNCC	4 cut(s)	95, 155, 659, 665
ScrFI	CCNGG	3 cut(s)	164, 274, 663
SduI	GDGCHC	1 cut(s)	680
SetI	ASST	9 cut(s)	157, 271, 378, 430, 619, 718, 754, 784, 827
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	3 cut(s)	95, 155, 659
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	4 cut(s)	291, 302, 546, 708
SsiI	CCGC	6 cut(s)	81, 84, 87, 102, 105, 214
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	162, 272, 661
TaaI	ACNGT	2 cut(s)	477, 598
TaiI	ACGT	2 cut(s)	718, 754
TaqI	TCGA	2 cut(s)	181, 516
TasI	AATT	4 cut(s)	291, 302, 546, 708
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	3 cut(s)	84, 87, 105
Tru1I	TTAA	2 cut(s)	39, 561
Tru9I	TTAA	2 cut(s)	39, 561
TseFI	GTSAC	4 cut(s)	21, 331, 452, 565
TseI	GCWGC	4 cut(s)	167, 238, 269, 464
Tsp45I	GTSAC	4 cut(s)	21, 331, 452, 565
TspDTI	ATGAA	3 cut(s)	383, 524, 816
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	3 cut(s)	95, 155, 659
XapI	RAATTY	1 cut(s)	708
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.