Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

40507042 .. 40512086

Gene Structure 5045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGATACTCATTTTGGCTCATCCTCCAAACCACTACCGTCGCCCCACCCCCCTTGTCTTCAAGATTTGTCTGTTCTTGTTGGTTATTTGGTCCTTCCGCAGAACCAAGCGTTTTCCGTGGCAGCCAGATTTGTTTGAAGAAAGCCTTAGAGCTGCAGGGATTTCAGGGATTGAAATCGGCACAAAATTATATGTGTCGAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGATGCATTTGCAGCATTGAAACGCTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAATGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGGTCATGCTGGTGGCTATGCTTTGCCTGCGGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGTGGAATTCCACGTGGTCGTGGTCGTGGTCGTGGGCGTGGGCGTGGGCATGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTTGATAGCTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

244

Amino Acids

27.21

Weight (kDa)

10.37

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	64 - 132	3e-14	RNA recognition motif
FoP_duplication	PF13865	185 - 239	1.3e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AciI	CCGC	2 cut(s)	100, 533
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	594
AcuI	CTGAAG	2 cut(s)	284, 336
AcvI	CACGTG	2 cut(s)	443, 602
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	64, 140, 176, 358
AjnI	CCWGG	2 cut(s)	502, 547
AluBI	AGCT	4 cut(s)	155, 262, 314, 708
AluI	AGCT	4 cut(s)	155, 262, 314, 708
Alw21I	GWGCWC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	2 cut(s)	550, 586
ApeKI	GCWGC	3 cut(s)	124, 155, 350
ApoI	RAATTY	1 cut(s)	594
AspS9I	GGNCC	4 cut(s)	93, 545, 551, 647
AvaII	GGWCC	3 cut(s)	93, 545, 647
BanI	GGYRCC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	567
BbrPI	CACGTG	2 cut(s)	443, 602
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	136, 142, 362
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	2 cut(s)	504, 549
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	3 cut(s)	125, 156, 351
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	3 cut(s)	126, 157, 352
Bme1390I	CCNGG	2 cut(s)	504, 549
Bme18I	GGWCC	3 cut(s)	93, 545, 647
BmgT120I	GGNCC	4 cut(s)	93, 545, 551, 647
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	504, 549
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	310
BsaAI	YACGTR	2 cut(s)	443, 602
BsaBI	GATNNNNATC	2 cut(s)	176, 708
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	119, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse8I	GATNNNNATC	2 cut(s)	176, 708
BseBI	CCWGG	2 cut(s)	504, 549
BseDI	CCNNGG	2 cut(s)	119, 589
BseGI	GGATG	2 cut(s)	22, 388
BseJI	GATNNNNATC	2 cut(s)	176, 708
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	3 cut(s)	240, 324, 642
BseXI	GCAGC	3 cut(s)	136, 142, 362
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	552, 588
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	552, 588
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	3 cut(s)	252, 399, 576
Bsp1720I	GCTNAGC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	100, 533
BspANI	GGCC	2 cut(s)	552, 588
BspCNI	CTCAG	3 cut(s)	241, 323, 643
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	119, 589
BssMI	GATC	3 cut(s)	252, 399, 576
BssNI	GRCGYC	1 cut(s)	494
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	504, 549
Bst4CI	ACNGT	2 cut(s)	41, 484
Bst6I	CTCTTC	2 cut(s)	248, 470
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	2 cut(s)	443, 602
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	149, 249, 310, 651, 732
BstDSI	CCRYGG	2 cut(s)	119, 589
BstF5I	GGATG	2 cut(s)	22, 388
BstKTI	GATC	3 cut(s)	255, 402, 579
BstMBI	GATC	3 cut(s)	252, 399, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 530
BstNI	CCWGG	2 cut(s)	504, 549
BstSCI	CCNGG	2 cut(s)	502, 547
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	136, 142, 362
BstV2I	GAAGAC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	552, 588
BtgI	CCRYGG	2 cut(s)	119, 589
BtsCI	GGATG	2 cut(s)	22, 388
Cac8I	GCNNGC	1 cut(s)	531
Cfr13I	GGNCC	4 cut(s)	93, 545, 551, 647
CseI	GACGC	1 cut(s)	502
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	509, 638, 713, 724
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	5 cut(s)	149, 249, 310, 651, 732
DpnI	GATC	3 cut(s)	254, 401, 578
DpnII	GATC	3 cut(s)	252, 399, 576
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	248, 470
EarI	CTCTTC	2 cut(s)	248, 470
Eco47I	GGWCC	3 cut(s)	93, 545, 647
Eco57I	CTGAAG	2 cut(s)	284, 336
Eco72I	CACGTG	2 cut(s)	443, 602
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	502, 547
EcoT22I	ATGCAT	1 cut(s)	346
FaeI	CATG	4 cut(s)	512, 641, 716, 727
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	4 cut(s)	508, 637, 712, 723
Fnu4HI	GCNGC	3 cut(s)	125, 156, 351
FokI	GGATG	2 cut(s)	9, 395
Fsp4HI	GCNGC	3 cut(s)	125, 156, 351
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	3 cut(s)	125, 156, 351
HaeIII	GGCC	2 cut(s)	552, 588
HgaI	GACGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	512, 641, 716, 727
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	2 cut(s)	250, 257
Hpy188III	TCNNGA	3 cut(s)	64, 403, 580
Hpy8I	GTNNAC	1 cut(s)	670
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	106, 564
HpyCH4III	ACNGT	2 cut(s)	41, 484
HpyCH4IV	ACGT	2 cut(s)	442, 601
HpyCH4V	TGCA	8 cut(s)	158, 208, 275, 344, 350, 440, 716, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 530
HpyF3I	CTNAG	5 cut(s)	149, 249, 310, 651, 732
HpySE526I	ACGT	2 cut(s)	442, 601
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	512, 641, 716, 727
Kzo9I	GATC	3 cut(s)	252, 399, 576
LmnI	GCTCC	1 cut(s)	561
Lsp1109I	GCAGC	3 cut(s)	136, 142, 362
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	442, 601
MaeIII	GTNAC	2 cut(s)	217, 451
MalI	GATC	3 cut(s)	254, 401, 578
MboI	GATC	3 cut(s)	252, 399, 576
MboII	GAAGA	8 cut(s)	52, 152, 235, 345, 409, 480, 487, 670
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	3 cut(s)	188, 432, 594
MnlI	CCTC	6 cut(s)	36, 220, 415, 471, 566, 648
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	504, 549
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	504, 549
MwoI	GCNNNNNNNGC	2 cut(s)	350, 530
NdeII	GATC	3 cut(s)	252, 399, 576
NlaIII	CATG	4 cut(s)	512, 641, 716, 727
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	217, 451
NsiI	ATGCAT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	432
PflFI	GACNNNGTC	1 cut(s)	504
PkrI	GCNGC	3 cut(s)	126, 157, 352
PmaCI	CACGTG	2 cut(s)	443, 602
PmlI	CACGTG	2 cut(s)	443, 602
Ppu21I	YACGTR	2 cut(s)	443, 602
PpuMI	RGGWCCY	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	502, 547
PspCI	CACGTG	2 cut(s)	443, 602
PspGI	CCWGG	2 cut(s)	502, 547
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	4 cut(s)	93, 545, 551, 647
PspPPI	RGGWCCY	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	3 cut(s)	125, 156, 351
Sau3AI	GATC	3 cut(s)	252, 399, 576
Sau96I	GGNCC	4 cut(s)	93, 545, 551, 647
ScrFI	CCNGG	2 cut(s)	504, 549
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	9 cut(s)	157, 264, 316, 445, 505, 604, 652, 667, 710
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	93, 545, 647
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	188, 432, 594
SsiI	CCGC	2 cut(s)	100, 533
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	502, 547
TaaI	ACNGT	2 cut(s)	41, 484
TaiI	ACGT	2 cut(s)	445, 604
TaqI	TCGA	2 cut(s)	200, 402
TasI	AATT	3 cut(s)	188, 432, 594
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TseFI	GTSAC	2 cut(s)	217, 451
TseI	GCWGC	3 cut(s)	124, 155, 350
Tsp45I	GTSAC	2 cut(s)	217, 451
TspDTI	ATGAA	3 cut(s)	269, 410, 699
TspGWI	ACGGA	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	504
VpaK11BI	GGWCC	3 cut(s)	93, 545, 647
XapI	RAATTY	1 cut(s)	594
XspI	CTAG	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.