Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

33620758 .. 33628415

Gene Structure 7658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1263100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCGACTGCTTTGGATATGTCGCTTGATGACATGATTAAGAACAGCAGGGGTAATCGTGACAGAAATAGAGAACAACGTGGTAGGGGTTCTCGTGGCCGCGGTGGAGCATGTGGCTCCTTTAATGCTGGAAGGATGGCCGCTGGAAGAATTCCAGCTGGAAGAATTCCAGCTGGAAGAATTACAGGACTTGTTCGTAGAGGTCCTCTCCCGGGGGTTACTCGGCCGTCCTCAACCAAGCGTTTCCCATGGCAGCCTGATTTGTTTGAAGACAGCCTTAGAGCTGCGGGGATATCAGGGATTGAAATTGGCACAAAGTTATATGTATCTAACTTGGACTACGGAGTGACAAATGAGGATATAAGGGAACTTTTCTCTGAGATCGGAGAGATGAAGCGATATGCAATACATTTTGACAAAAATGGTCGCCAAAGTGGCTCAGCTGAAGTGGTTTATACTAGAAGAAGTGATGCATTCGCAGCATTGAAGCGCTATAATAATGTTTTATTGGACGGGAAGCCTATGAAAATTGAGATTATTGGTGCCAGTGCAGGGATGCCTATTTCAGCTCGTGTGAATGTGACAGGCATGCACGGAAGGAAGAAAAGGACTGTTGTAATGACGCCTGGACCTGGTAATGCTGGTGGCTATGCTATGCCTATGGTTAACCGCGGTTCTGGTGGGAGCAGCCGTGGAGGGAATAGAAACGGTCGAGGGAAACCACGTGGGAGTGGCAGCGGCAGTGGTCGTGGGCGTGGGCGTGGGCGTGGTCGTGGTGGAGAGTGGAGGAAGAAGCATGTGGAGAAGTCGGTTGATGAACTCGACAAGGAACTAGATAGCTATCACACAGATATCATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

289

Amino Acids

31.11

Weight (kDa)

10.88

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	107 - 175	9.5e-14	RNA recognition motif
FoP_duplication	PF13865	224 - 283	1.3e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	102, 672
AciI	CCGC	7 cut(s)	100, 102, 141, 287, 670, 672, 738
AcoI	YGGCCR	3 cut(s)	97, 138, 224
AcsI	RAATTY	2 cut(s)	150, 165
AcuI	CTGAAG	1 cut(s)	465
AcvI	CACGTG	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	623
AfeI	AGCGCT	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	212, 552, 632
AgsI	TTSAA	3 cut(s)	269, 305, 487
AjnI	CCWGG	2 cut(s)	625, 631
AluBI	AGCT	6 cut(s)	158, 173, 284, 443, 569, 840
AluI	AGCT	6 cut(s)	158, 173, 284, 443, 569, 840
Ama87I	CYCGRG	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	491
AoxI	GGCC	3 cut(s)	97, 138, 224
ApeKI	GCWGC	5 cut(s)	253, 284, 479, 687, 735
ApoI	RAATTY	2 cut(s)	150, 165
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	203, 629
AsuC2I	CCSGG	2 cut(s)	212, 213
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	203, 629
BanI	GGYRCC	1 cut(s)	542
BauI	CACGAG	2 cut(s)	93, 570
BbrPI	CACGTG	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	265, 271, 491, 699, 747
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	211, 675
BciT130I	CCWGG	2 cut(s)	627, 633
BcnI	CCSGG	2 cut(s)	212, 213
BfaI	CTAG	2 cut(s)	459, 833
BfoI	RGCGCY	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	8 cut(s)	100, 141, 254, 285, 480, 688, 736, 739
BlpI	GCTNAGC	1 cut(s)	439
BlsI	GCNGC	8 cut(s)	101, 142, 255, 286, 481, 689, 737, 740
Bme1390I	CCNGG	4 cut(s)	212, 213, 627, 633
Bme18I	GGWCC	2 cut(s)	203, 629
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	203, 629
BmiI	GGNNCC	2 cut(s)	118, 544
BmrFI	CCNGG	4 cut(s)	212, 213, 627, 633
BmsI	GCATC	2 cut(s)	460, 546
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
Bpu1102I	GCTNAGC	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	212, 213
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	6 cut(s)	100, 211, 212, 248, 670, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 552, 632
Bse1I	ACTGG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	2 cut(s)	627, 633
BseDI	CCNNGG	6 cut(s)	100, 211, 212, 248, 670, 691
BseGI	GGATG	2 cut(s)	141, 561
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	3 cut(s)	212, 552, 632
BseMII	CTCAG	2 cut(s)	369, 453
BseNI	ACTGG	1 cut(s)	546
BseX3I	CGGCCG	1 cut(s)	224
BseXI	GCAGC	5 cut(s)	265, 271, 491, 699, 747
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	102, 672
Bsh1285I	CGRYCG	2 cut(s)	227, 712
BshFI	GGCC	3 cut(s)	99, 140, 226
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	2 cut(s)	227, 712
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	212, 552, 632
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	99, 140, 226
BsoBI	CYCGRG	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	381
Bsp1720I	GCTNAGC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	7 cut(s)	100, 102, 141, 287, 670, 672, 738
BspANI	GGCC	3 cut(s)	99, 140, 226
BspCNI	CTCAG	2 cut(s)	370, 452
BspFNI	CGCG	2 cut(s)	102, 672
BspLI	GGNNCC	2 cut(s)	118, 544
BspT107I	GGYRCC	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	6 cut(s)	100, 211, 212, 248, 670, 691
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	623
BssSI	CACGAG	2 cut(s)	93, 570
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	2 cut(s)	93, 570
Bst2UI	CCWGG	2 cut(s)	627, 633
Bst4CI	ACNGT	2 cut(s)	613, 710
BstACI	GRCGYC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	278, 378, 439
BstDSI	CCRYGG	4 cut(s)	100, 248, 670, 691
BstF5I	GGATG	2 cut(s)	141, 561
BstFNI	CGCG	2 cut(s)	102, 672
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstMCI	CGRYCG	2 cut(s)	227, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 479
BstNI	CCWGG	2 cut(s)	627, 633
BstNSI	RCATGY	3 cut(s)	114, 592, 800
BstSCI	CCNGG	4 cut(s)	210, 211, 625, 631
BstUI	CGCG	2 cut(s)	102, 672
BstV1I	GCAGC	5 cut(s)	265, 271, 491, 699, 747
BstV2I	GAAGAC	1 cut(s)	276
BstZI	CGGCCG	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	99, 140, 226
BtgI	CCRYGG	4 cut(s)	100, 248, 670, 691
BtsCI	GGATG	2 cut(s)	141, 561
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	553, 748
Cac8I	GCNNGC	1 cut(s)	590
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	203, 629
Cfr42I	CCGCGG	2 cut(s)	103, 673
Cfr9I	CCCGGG	1 cut(s)	211
CseI	GACGC	1 cut(s)	631
CsiI	ACCWGGT	1 cut(s)	631
CviAII	CATG	6 cut(s)	34, 111, 249, 589, 797, 856
DdeI	CTNAG	3 cut(s)	278, 378, 439
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	3 cut(s)	97, 138, 224
EagI	CGGCCG	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	248
Eco32I	GATATC	2 cut(s)	294, 853
Eco47I	GGWCC	2 cut(s)	203, 629
Eco47III	AGCGCT	1 cut(s)	491
Eco52I	CGGCCG	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	465
Eco72I	CACGTG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	150, 165
EcoRII	CCWGG	2 cut(s)	625, 631
EcoRV	GATATC	2 cut(s)	294, 853
EcoT14I	CCWWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	6 cut(s)	37, 114, 252, 592, 800, 859
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	6 cut(s)	33, 110, 248, 588, 796, 855
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	8 cut(s)	100, 141, 254, 285, 480, 688, 736, 739
FokI	GGATG	2 cut(s)	148, 568
Fsp4HI	GCNGC	8 cut(s)	100, 141, 254, 285, 480, 688, 736, 739
FspBI	CTAG	2 cut(s)	459, 833
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	8 cut(s)	100, 141, 254, 285, 480, 688, 736, 739
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	99, 140, 226
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	6 cut(s)	37, 114, 252, 592, 800, 859
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	2 cut(s)	6, 667
HindII	GTYRAC	2 cut(s)	6, 667
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	6, 667
Hpy188I	TCNGA	2 cut(s)	379, 386
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	6, 667
HpyAV	CCTTC	2 cut(s)	126, 591
HpyCH4III	ACNGT	2 cut(s)	613, 710
HpyCH4IV	ACGT	2 cut(s)	79, 724
HpyCH4V	TGCA	5 cut(s)	404, 473, 551, 592, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 479
HpyF3I	CTNAG	3 cut(s)	278, 378, 439
HpySE526I	ACGT	2 cut(s)	79, 724
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	6 cut(s)	37, 114, 252, 592, 800, 859
HspAI	GCGC	1 cut(s)	490
KspAI	GTTAAC	1 cut(s)	667
KspI	CCGCGG	2 cut(s)	103, 673
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	107, 122, 684
Lsp1109I	GCAGC	5 cut(s)	265, 271, 491, 699, 747
LweI	GCATC	2 cut(s)	460, 546
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	2 cut(s)	459, 833
MaeII	ACGT	2 cut(s)	79, 724
MaeIII	GTNAC	4 cut(s)	59, 217, 346, 580
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	7 cut(s)	159, 174, 189, 281, 474, 613, 802
MluCI	AATT	5 cut(s)	150, 165, 180, 306, 528
MnlI	CCTC	7 cut(s)	194, 216, 241, 349, 689, 707, 780
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	3 cut(s)	39, 123, 666
MspA1I	CMGCKG	7 cut(s)	102, 143, 158, 173, 443, 672, 738
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	212, 213, 627, 633
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	2 cut(s)	627, 633
MvnI	CGCG	2 cut(s)	102, 672
MwoI	GCNNNNNNNGC	2 cut(s)	435, 479
NciI	CCSGG	2 cut(s)	212, 213
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	6 cut(s)	37, 114, 252, 592, 800, 859
NlaIV	GGNNCC	2 cut(s)	118, 544
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	59, 346, 580
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	3 cut(s)	114, 592, 800
PaeI	GCATGC	1 cut(s)	592
PctI	GAATGC	1 cut(s)	473
PkrI	GCNGC	8 cut(s)	101, 142, 255, 286, 481, 689, 737, 740
PmaCI	CACGTG	1 cut(s)	725
PmlI	CACGTG	1 cut(s)	725
Ppu21I	YACGTR	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	625, 631
PspCI	CACGTG	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	625, 631
PspN4I	GGNNCC	2 cut(s)	118, 544
PspPI	GGNCC	2 cut(s)	203, 629
PspPPI	RGGWCCY	1 cut(s)	203
PvuII	CAGCTG	3 cut(s)	158, 173, 443
SacII	CCGCGG	2 cut(s)	103, 673
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	39, 123, 666
SatI	GCNGC	8 cut(s)	100, 141, 254, 285, 480, 688, 736, 739
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	203, 629
ScrFI	CCNGG	4 cut(s)	212, 213, 627, 633
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	460, 546
Sfr303I	CCGCGG	2 cut(s)	103, 673
SgrBI	CCGCGG	2 cut(s)	103, 673
SinI	GGWCC	2 cut(s)	203, 629
SmaI	CCCGGG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	592
Sse9I	AATT	5 cut(s)	150, 165, 180, 306, 528
SsiI	CCGC	7 cut(s)	100, 102, 141, 287, 670, 672, 738
SspMI	CTAG	2 cut(s)	459, 833
StyD4I	CCNGG	4 cut(s)	210, 211, 625, 631
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	613, 710
TaiI	ACGT	2 cut(s)	82, 727
TaqI	TCGA	3 cut(s)	5, 712, 822
TasI	AATT	5 cut(s)	150, 165, 180, 306, 528
TauI	GCSGC	3 cut(s)	102, 143, 741
Tru1I	TTAA	3 cut(s)	39, 123, 666
Tru9I	TTAA	3 cut(s)	39, 123, 666
TscAI	CASTG	2 cut(s)	553, 748
TseFI	GTSAC	3 cut(s)	59, 346, 580
TseI	GCWGC	5 cut(s)	253, 284, 479, 687, 735
Tsp45I	GTSAC	3 cut(s)	59, 346, 580
TspDTI	ATGAA	3 cut(s)	407, 539, 831
TspGWI	ACGGA	2 cut(s)	357, 609
TspMI	CCCGGG	1 cut(s)	211
TspRI	CASTG	2 cut(s)	553, 748
VpaK11BI	GGWCC	2 cut(s)	203, 629
XapI	RAATTY	2 cut(s)	150, 165
XceI	RCATGY	3 cut(s)	114, 592, 800
XmaI	CCCGGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	459, 833
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.