Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

31852534 .. 31859405

Gene Structure 6872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1258100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTGTTCATGGAGAAGCTCATTTTGGCTCATCTTCTAAAGCGCTATCAACACCCACTGCATATGTACCGTTATCTTCAAGATTTATCTGTACTTGTGGGTTGTTGGTCTACCCGCAGAACCAAGCGTTTCCCATGGCAGCCTGATTTGTTTGAAGACAGCCTTAGAGCTGCAGGGATATCAGGGATTGAGATTGGCACAAAGTTATATGTTTCCAACTTGGACTATGGAGTGACAAATGAGGATATAAGGGAACTTTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTACATTTTGACAAAAATGGTCGCCCAAGTGGTTCAGCTGAAGTGGTTTATACTAGAAGAAGTGATGCATTTGCAGCATTGAAGCGGTATAATAATGTTCTATTGGACGGGAAGCCTATGAAGATTGAGATTGTTGGTGCTAATGCAGGGATGCCTATTTCAGCTCGTGTGAATGTGACTGGCATGCATGGAAGGAAGAAAAGGACTGTTGTAATGACGCCCGGACCTGGTAATGCTGGTGGCTATGCTATGCCTATGGTTAATCGTGGTCCTAGTAGGAGCAGTCGTGGAGGGAACAGAAATGGTCGCGGCAAACCGCGTGGGAATGGCAGCGGCAGTGGTCGTGGACGCGGGCGTGGTCGTGGTGGAGAAGGGAGGAAGAAGCCTGTGGAGAAGTCGGTTGATGAACTTGACAAGGAACTCGATAGCTATCACGCAGATAACATGCAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

249

Amino Acids

27.51

Weight (kDa)

10.12

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	69 - 137	4.5e-14	RNA recognition motif
FoP_duplication	PF13865	186 - 245	4.9e-10	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	3 cut(s)	600, 610, 642
AciI	CCGC	6 cut(s)	115, 376, 600, 608, 624, 642
AcuI	CTGAAG	2 cut(s)	299, 351
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	3 cut(s)	68, 93, 294
AfeI	AGCGCT	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	80, 155, 373
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	6 cut(s)	19, 170, 277, 329, 455, 720
AluI	AGCT	6 cut(s)	19, 170, 277, 329, 455, 720
Aor51HI	AGCGCT	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	139, 170, 365, 621
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	515, 560
AsuC2I	CCSGG	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	515, 560
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	151, 157, 377, 633
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	345, 564
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	6 cut(s)	140, 171, 366, 601, 622, 625
BlsI	GCNGC	6 cut(s)	141, 172, 367, 602, 623, 626
Bme1390I	CCNGG	2 cut(s)	513, 519
Bme18I	GGWCC	2 cut(s)	515, 560
BmgT120I	GGNCC	2 cut(s)	515, 560
BmrFI	CCNGG	2 cut(s)	513, 519
BmsI	GCATC	2 cut(s)	346, 432
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	4 cut(s)	151, 157, 377, 633
Bsh1236I	CGCG	3 cut(s)	600, 610, 642
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	6 cut(s)	115, 376, 600, 608, 624, 642
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	3 cut(s)	600, 610, 642
BspMAI	CTGCAG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	71, 499
BstACI	GRCGYC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	476, 644
BstDEI	CTNAG	2 cut(s)	164, 264
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	3 cut(s)	600, 610, 642
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	2 cut(s)	478, 739
BstSCI	CCNGG	2 cut(s)	511, 517
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	3 cut(s)	600, 610, 642
BstV1I	GCAGC	4 cut(s)	151, 157, 377, 633
BstV2I	GAAGAC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	2 cut(s)	56, 634
BtsIMutI	CAGTG	2 cut(s)	56, 634
Cac8I	GCNNGC	2 cut(s)	476, 644
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	515, 560
CseI	GACGC	2 cut(s)	517, 648
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	67, 92, 293
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	5 cut(s)	10, 135, 475, 479, 736
CviQI	GTAC	3 cut(s)	67, 92, 293
DdeI	CTNAG	2 cut(s)	164, 264
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	515, 560
Eco47III	AGCGCT	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	299, 351
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	134
EcoT22I	ATGCAT	2 cut(s)	361, 480
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	5 cut(s)	13, 138, 478, 482, 739
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	5 cut(s)	9, 134, 474, 478, 735
FauI	CCCGC	2 cut(s)	122, 635
FauNDI	CATATG	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	6 cut(s)	140, 171, 366, 601, 622, 625
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	140, 171, 366, 601, 622, 625
FspBI	CTAG	2 cut(s)	345, 564
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	6 cut(s)	140, 171, 366, 601, 622, 625
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	2 cut(s)	517, 648
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	13, 138, 478, 482, 739
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	513
Hpy166II	GTNNAC	2 cut(s)	111, 638
Hpy188I	TCNGA	2 cut(s)	265, 272
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	111, 638
HpyAV	CCTTC	2 cut(s)	477, 656
HpyCH4III	ACNGT	2 cut(s)	71, 499
HpyCH4V	TGCA	8 cut(s)	61, 173, 290, 359, 365, 437, 478, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	164, 264
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	13, 138, 478, 482, 739
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	4 cut(s)	151, 157, 377, 633
LweI	GCATC	2 cut(s)	346, 432
MabI	ACCWGGT	1 cut(s)	517
MaeI	CTAG	2 cut(s)	345, 564
MaeIII	GTNAC	2 cut(s)	232, 466
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	7 cut(s)	26, 68, 167, 360, 424, 499, 682
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	235, 575, 660
Mph1103I	ATGCAT	2 cut(s)	361, 480
MseI	TTAA	1 cut(s)	552
MspA1I	CMGCKG	2 cut(s)	329, 624
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	513, 519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	3 cut(s)	600, 610, 642
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	5 cut(s)	13, 138, 478, 482, 739
NmuCI	GTSAC	2 cut(s)	232, 466
NsiI	ATGCAT	2 cut(s)	361, 480
NspI	RCATGY	2 cut(s)	478, 739
PaeI	GCATGC	1 cut(s)	478
PkrI	GCNGC	6 cut(s)	141, 172, 367, 602, 623, 626
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	515, 560
PstI	CTGCAG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	68, 93, 294
RsaNI	GTAC	3 cut(s)	67, 92, 293
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	6 cut(s)	140, 171, 366, 601, 622, 625
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	515, 560
ScrFI	CCNGG	2 cut(s)	513, 519
SetI	ASST	7 cut(s)	21, 172, 279, 331, 457, 520, 722
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	346, 432
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	515, 560
SphI	GCATGC	1 cut(s)	478
SsiI	CCGC	6 cut(s)	115, 376, 600, 608, 624, 642
SspMI	CTAG	2 cut(s)	345, 564
StyD4I	CCNGG	2 cut(s)	511, 517
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	71, 499
TaqI	TCGA	1 cut(s)	714
TatI	WGTACW	2 cut(s)	91, 292
TauI	GCSGC	2 cut(s)	603, 627
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	63, 634
TseFI	GTSAC	2 cut(s)	232, 466
TseI	GCWGC	4 cut(s)	139, 170, 365, 621
Tsp45I	GTSAC	2 cut(s)	232, 466
TspDTI	ATGAA	2 cut(s)	425, 711
TspRI	CASTG	2 cut(s)	63, 634
VpaK11BI	GGWCC	2 cut(s)	515, 560
XceI	RCATGY	2 cut(s)	478, 739
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	345, 564
Zsp2I	ATGCAT	2 cut(s)	361, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.