Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008988.1

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1865

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008988.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ggctcagctgaagtggtttataccagaagaagtgacgcatttgcagcattgaaacgctataataatgtcctattggatgggaagcctatgaagatcgagattgttggtgccaatgagggaatgccaatttctgcacgtgtcaatgtgacaggagtacaaggaagaaagaagaggacagttgtaatgacgcccagacctggtcatgctggtggctatgctttgcctgcggttaatcgtggtcctggcccttctaggtgggttcttatctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

90

Amino Acids

9.65

Weight (kDa)

10.68

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	196, 241
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	239, 245
AvaII	GGWCC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	198, 243
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	45
BlpI	GCTNAGC	1 cut(s)	4
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	198, 243
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	239, 245
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	198, 243
Bpu1102I	GCTNAGC	1 cut(s)	4
BsaAI	YACGTR	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	198, 243
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	93
Bsp1720I	GCTNAGC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	198, 243
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 224
BstNI	CCWGG	2 cut(s)	198, 243
BstSCI	CCNGG	2 cut(s)	196, 241
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	239, 245
CseI	GACGC	2 cut(s)	44, 196
CsiI	ACCWGGT	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	5 cut(s)	3, 8, 85, 213, 246
CviKI_1	RGCY	5 cut(s)	3, 8, 85, 213, 246
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	4
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	196, 241
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	21, 60, 89, 204, 216
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	246
HgaI	GACGC	2 cut(s)	44, 196
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	44, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 224
HpyF3I	CTNAG	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	9 cut(s)	37, 135, 183, 192, 205, 210, 228, 237, 255
Lsp1109I	GCAGC	1 cut(s)	56
MabI	ACCWGGT	1 cut(s)	196
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	32, 145
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	4 cut(s)	39, 103, 174, 181
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	2 cut(s)	109, 165
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	198, 243
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	2 cut(s)	198, 243
MwoI	GCNNNNNNNGC	2 cut(s)	44, 224
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	32, 145
PctI	GAATGC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	196, 241
PspCI	CACGTG	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	196, 241
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	239, 245
PsyI	GACNNNGTC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	239, 245
ScrFI	CCNGG	2 cut(s)	198, 243
SetI	ASST	4 cut(s)	10, 139, 199, 257
SexAI	ACCWGGT	1 cut(s)	196
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	196, 241
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	32, 145
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	32, 145
TspDTI	ATGAA	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	239
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.