Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

18229309 .. 18232995

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGACTGCTTTGGATATGTCGCTTGATGACATGATTAAGAACAGCAGGGGTAATCGTGACAGAAATAGAGAACAACGCGGTAGGGGTTCTCGTGGCCGTGGTGGAGCACGTGGGTCCTTTAATGCTGGAAGGATGGCCGCTGGAAGAATTCCAGCTGGAAGAATTACAGGACTTGTTCGTAGAGGTCCTCTCCCGGGTGGTGCTCGGCCGTCCTCGTATACCATTGCCAAGTCTACCCGCAGAACCAAGCGTTTCCCATGGCAGCCTGATTTGTTTGAAGACAGCCTTAGAGCTGCGGGGATATCAGGGATTGAAATTGGCACAAAGTTATATGTATCTAACTTGGACTATGGAGTGACAAATGAGGATATAAGGGAACTTTTCTCTGAGATCGGAGAGATGAAGCGATATGCAATACATTTTGATAACAATGGTCGCCAAAGTGGTTCAGCTGAAGTGGTTTATACTAGAAGAAGTGATGCATTCGCAGCATTGAAGCGCTATAATAATGTTTTATTGGACGGGAAGCCTATGAAAATTGAGCTTGTTGGTGCCAGTGCAGGGATGCCTATTTCAGCTCGTGTGAATGTGACAGGCGTGCACGGAAGGAAGAAAAGGACTGTTGTAATGACGTACGCCTGGACCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

218

Amino Acids

23.97

Weight (kDa)

10.88

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AccI	GTMKAC	3 cut(s)	5, 221, 236
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	81, 141, 241, 299
AcoI	YGGCCR	3 cut(s)	97, 138, 209
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	477
AcvI	CACGTG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	638
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	197, 564, 648
AgsI	TTSAA	3 cut(s)	281, 317, 499
AjnI	CCWGG	2 cut(s)	641, 647
AluBI	AGCT	5 cut(s)	158, 296, 455, 547, 581
AluI	AGCT	5 cut(s)	158, 296, 455, 547, 581
Alw21I	GWGCWC	3 cut(s)	112, 208, 606
Alw44I	GTGCAC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	503
AoxI	GGCC	3 cut(s)	97, 138, 209
ApaLI	GTGCAC	1 cut(s)	602
ApeKI	GCWGC	3 cut(s)	265, 296, 491
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	117, 188, 645
AsuC2I	CCSGG	2 cut(s)	197, 198
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	3 cut(s)	117, 188, 645
BaeGI	GKGCMC	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	554
BauI	CACGAG	2 cut(s)	93, 582
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	3 cut(s)	112, 208, 606
BbvI	GCAGC	3 cut(s)	277, 283, 503
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	84, 196
BciT130I	CCWGG	2 cut(s)	643, 649
BcnI	CCSGG	2 cut(s)	197, 198
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	4 cut(s)	141, 266, 297, 492
BlsI	GCNGC	4 cut(s)	142, 267, 298, 493
Bme1390I	CCNGG	4 cut(s)	197, 198, 643, 649
Bme18I	GGWCC	3 cut(s)	117, 188, 645
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	117, 188, 645
BmiI	GGNNCC	2 cut(s)	118, 556
BmrFI	CCNGG	4 cut(s)	197, 198, 643, 649
BmsI	GCATC	2 cut(s)	472, 558
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpuMI	CCSGG	2 cut(s)	197, 198
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	100, 196, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 564, 648
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	643, 649
BseDI	CCNNGG	3 cut(s)	100, 196, 260
BseGI	GGATG	2 cut(s)	141, 573
BseLI	CCNNNNNNNGG	3 cut(s)	197, 564, 648
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	606
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	277, 283, 503
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	99, 140, 211
BshNI	GGYRCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	3 cut(s)	112, 208, 606
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	197
BsiWI	CGTACG	1 cut(s)	636
BslI	CCNNNNNNNGG	3 cut(s)	197, 564, 648
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	99, 140, 211
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	112, 208, 606
Bsp143I	GATC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	4 cut(s)	81, 141, 241, 299
BspANI	GGCC	3 cut(s)	99, 140, 211
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	118, 556
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	3 cut(s)	100, 196, 260
BssMI	GATC	1 cut(s)	393
BssNAI	GTATAC	1 cut(s)	222
BssSI	CACGAG	2 cut(s)	93, 582
BssT1I	CCWWGG	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	222
Bst2BI	CACGAG	2 cut(s)	93, 582
Bst2UI	CCWGG	2 cut(s)	643, 649
Bst4CI	ACNGT	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	290, 390
BstDSI	CCRYGG	2 cut(s)	100, 260
BstF5I	GGATG	2 cut(s)	141, 573
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	393
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	2 cut(s)	643, 649
BstSCI	CCNGG	4 cut(s)	195, 196, 641, 647
BstSLI	GKGCMC	1 cut(s)	606
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	277, 283, 503
BstV2I	GAAGAC	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	222
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	99, 140, 211
BtgI	CCRYGG	2 cut(s)	100, 260
BtsCI	GGATG	2 cut(s)	141, 573
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	602
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	117, 188, 645
Cfr9I	CCCGGG	1 cut(s)	196
CsiI	ACCWGGT	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	2 cut(s)	34, 261
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	290, 390
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EaeI	YGGCCR	3 cut(s)	97, 138, 209
EagI	CGGCCG	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	117, 188, 645
Eco47III	AGCGCT	1 cut(s)	503
Eco52I	CGGCCG	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	477
Eco72I	CACGTG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	117, 188
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	641, 647
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	37, 264
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	2 cut(s)	33, 260
FauI	CCCGC	2 cut(s)	248, 292
FblI	GTMKAC	3 cut(s)	5, 221, 236
Fnu4HI	GCNGC	4 cut(s)	141, 266, 297, 492
FokI	GGATG	2 cut(s)	148, 580
Fsp4HI	GCNGC	4 cut(s)	141, 266, 297, 492
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	4 cut(s)	141, 266, 297, 492
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	99, 140, 211
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	37, 264
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	4 cut(s)	6, 222, 237, 604
Hpy188I	TCNGA	2 cut(s)	391, 398
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	4 cut(s)	6, 222, 237, 604
HpyAV	CCTTC	2 cut(s)	126, 603
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	112, 635
HpyCH4V	TGCA	4 cut(s)	416, 485, 563, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	2 cut(s)	290, 390
HpySE526I	ACGT	2 cut(s)	112, 635
Hsp92II	CATG	2 cut(s)	37, 264
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	277, 283, 503
LweI	GCATC	2 cut(s)	472, 558
MabI	ACCWGGT	1 cut(s)	647
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	112, 635
MaeIII	GTNAC	3 cut(s)	59, 358, 592
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	5 cut(s)	159, 174, 293, 486, 625
MhlI	GDGCHC	3 cut(s)	112, 208, 606
MluCI	AATT	4 cut(s)	150, 165, 318, 540
MnlI	CCTC	4 cut(s)	179, 201, 226, 361
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	2 cut(s)	39, 123
MspA1I	CMGCKG	3 cut(s)	143, 158, 455
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	4 cut(s)	197, 198, 643, 649
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	643, 649
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	2 cut(s)	197, 198
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	2 cut(s)	37, 264
NlaIV	GGNNCC	2 cut(s)	118, 556
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	59, 358, 592
NsiI	ATGCAT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	485
Pfl23II	CGTACG	1 cut(s)	636
PkrI	GCNGC	4 cut(s)	142, 267, 298, 493
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	2 cut(s)	117, 188
Psp5II	RGGWCCY	2 cut(s)	117, 188
Psp6I	CCWGG	2 cut(s)	641, 647
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	641, 647
PspLI	CGTACG	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	118, 556
PspPI	GGNCC	3 cut(s)	117, 188, 645
PspPPI	RGGWCCY	2 cut(s)	117, 188
PvuII	CAGCTG	2 cut(s)	158, 455
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	39, 123
SatI	GCNGC	4 cut(s)	141, 266, 297, 492
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	3 cut(s)	117, 188, 645
ScrFI	CCNGG	4 cut(s)	197, 198, 643, 649
SduI	GDGCHC	3 cut(s)	112, 208, 606
SetI	ASST	9 cut(s)	115, 160, 190, 298, 457, 549, 583, 638, 650
SexAI	ACCWGGT	1 cut(s)	647
SfaNI	GCATC	2 cut(s)	472, 558
SinI	GGWCC	3 cut(s)	117, 188, 645
SmaI	CCCGGG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	150, 165, 318, 540
SsiI	CCGC	4 cut(s)	81, 141, 241, 299
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	195, 196, 641, 647
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	115, 638
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	150, 165, 318, 540
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	39, 123
Tru9I	TTAA	2 cut(s)	39, 123
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	3 cut(s)	59, 358, 592
TseI	GCWGC	3 cut(s)	265, 296, 491
Tsp45I	GTSAC	3 cut(s)	59, 358, 592
TspDTI	ATGAA	2 cut(s)	419, 551
TspGWI	ACGGA	1 cut(s)	621
TspMI	CCCGGG	1 cut(s)	196
TspRI	CASTG	1 cut(s)	565
VneI	GTGCAC	1 cut(s)	602
VpaK11BI	GGWCC	3 cut(s)	117, 188, 645
XapI	RAATTY	1 cut(s)	150
XmaI	CCCGGG	1 cut(s)	196
XmiI	GTMKAC	3 cut(s)	5, 221, 236
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.