Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

31859407 .. 31860289

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1258200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCGACTGCTTTGGATATGTCGCTTGATGACATGATTAAGAACAGCAGGGGTAACCGTGAGAGAAATAGAGAACAACGTGGTAGGGGTTCTCGTGGCCGTGGAGGACCACGTGGCTCCTTTAATGCTGGAAGGATGGCCGCCGGAAGAATTCCAGCTGGAAGGATGGCCAGTGGAAGAATTCCAGCTGGAAGAATGACAGGAGGAGTTCGTAGAGGTCCTCTCACGGTGAATGCTCGGCCATCCTCGTATACCATTGCCAAGGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

91

Amino Acids

9.56

Weight (kDa)

12.0

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 251
AciI	CCGC	1 cut(s)	141
AcoI	YGGCCR	4 cut(s)	97, 138, 168, 239
AcsI	RAATTY	2 cut(s)	150, 180
AcvI	CACGTG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	158, 188, 270
AluI	AGCT	3 cut(s)	158, 188, 270
AoxI	GGCC	4 cut(s)	97, 138, 168, 239
ApoI	RAATTY	2 cut(s)	150, 180
AspS9I	GGNCC	2 cut(s)	107, 218
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	107, 218
BalI	TGGCCA	1 cut(s)	170
BauI	CACGAG	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	113
BccI	CCATC	3 cut(s)	130, 160, 250
BceAI	ACGGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	107, 218
BmgT120I	GGNCC	2 cut(s)	107, 218
BmiI	GGNNCC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	100, 261
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	100, 261
BseGI	GGATG	3 cut(s)	141, 171, 242
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	99, 140, 170, 241
BsiSI	CCGG	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	99, 140, 170, 241
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	4 cut(s)	99, 140, 170, 241
BspLI	GGNNCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	100, 261
BssNAI	GTATAC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	59, 229
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	141, 171, 242
BstPI	GGTNACC	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	99, 140, 170, 241
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	141, 171, 242
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	107, 218
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	8 cut(s)	99, 117, 140, 158, 170, 188, 241, 270
CviKI_1	RGCY	8 cut(s)	99, 117, 140, 158, 170, 188, 241, 270
EaeI	YGGCCR	4 cut(s)	97, 138, 168, 239
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	107, 218
Eco72I	CACGTG	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	150, 180
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	37
FaiI	YATR	3 cut(s)	20, 35, 252
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	2 cut(s)	5, 251
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	148, 178, 229
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	99, 140, 170, 241
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	6, 252
Hpy8I	GTNNAC	2 cut(s)	6, 252
HpyAV	CCTTC	2 cut(s)	126, 156
HpyCH4III	ACNGT	2 cut(s)	59, 229
HpyCH4IV	ACGT	2 cut(s)	79, 112
HpySE526I	ACGT	2 cut(s)	79, 112
Hsp92II	CATG	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	9 cut(s)	34, 114, 144, 157, 168, 174, 184, 186, 198
MaeII	ACGT	2 cut(s)	79, 112
MaeIII	GTNAC	1 cut(s)	53
MboII	GAAGA	3 cut(s)	159, 189, 204
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	2 cut(s)	150, 180
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	5 cut(s)	98, 197, 209, 231, 256
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	39, 123
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	158, 188
MspI	CCGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	217
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	142
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
PspCI	CACGTG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	107, 218
PspPPI	RGGWCCY	1 cut(s)	218
PvuII	CAGCTG	2 cut(s)	158, 188
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	39, 123
SatI	GCNGC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	107, 218
SetI	ASST	6 cut(s)	82, 115, 160, 190, 220, 272
SinI	GGWCC	2 cut(s)	107, 218
Sse9I	AATT	2 cut(s)	150, 180
SsiI	CCGC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	59, 229
TaiI	ACGT	2 cut(s)	82, 115
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	150, 180
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	39, 123
Tru9I	TTAA	2 cut(s)	39, 123
TscAI	CASTG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	107, 218
XapI	RAATTY	2 cut(s)	150, 180
XmiI	GTMKAC	2 cut(s)	5, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.