Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

38232623 .. 38237543

Gene Structure 4921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACTACTACTTTGGATATGTCCCTTGATGATATGATTAAGAGCAAAAGGGGTAATCGTGATAGAAACAGAGAACGTGGCAGGGCTCCTCGCGGTGGTCGTGGCCGTGGCGGCCGTGGGTCCCGTGGGTCTTTTATGGGTGGAAGAATGACAGGGGCAGTTCGGAGAGGTCCTCCCCCCGCAATAAATACTCGACCATCTGCCCACACCATTGCCAAGTCCTTCCGCAGAACCAAGCGTTTTCCGTGGCAGCCAGATTTGTTTGAAGAAAGCCTTAGAGCTGCAGGGATTTCAGGGATTGAAATCGGCACAAAATTATATGTGTCGAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGACGCATTTGCAGCATTGAAACGCTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAATGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGGTCATGCTGGTGGCTATGCTTTGCCTGCGGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGTGGAATTCCACGTGGTCGTGGTCGTGGTCGTGGTCGTGGGCGTGGGCATGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTTGATAGCTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

286

Amino Acids

31.37

Weight (kDa)

11.25

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	106 - 174	4e-14	RNA recognition motif
FoP_duplication	PF13865	227 - 281	1.7e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	1 cut(s)	93
AciI	CCGC	5 cut(s)	93, 111, 180, 226, 659
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	3 cut(s)	103, 112, 712
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	2 cut(s)	410, 462
AcvI	CACGTG	2 cut(s)	569, 728
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	2 cut(s)	95, 629
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	266, 302, 484
AjnI	CCWGG	2 cut(s)	628, 673
AluBI	AGCT	4 cut(s)	281, 388, 440, 834
AluI	AGCT	4 cut(s)	281, 388, 440, 834
Alw21I	GWGCWC	1 cut(s)	692
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	4 cut(s)	103, 112, 676, 712
ApeKI	GCWGC	3 cut(s)	250, 281, 476
ApoI	RAATTY	1 cut(s)	720
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	5 cut(s)	120, 170, 671, 677, 773
AvaII	GGWCC	4 cut(s)	120, 170, 671, 773
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	693
BbrPI	CACGTG	2 cut(s)	569, 728
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	3 cut(s)	262, 268, 488
BccI	CCATC	2 cut(s)	205, 503
BceAI	ACGGC	3 cut(s)	90, 99, 699
BciT130I	CCWGG	2 cut(s)	630, 675
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	4 cut(s)	112, 251, 282, 477
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	4 cut(s)	113, 252, 283, 478
Bme1390I	CCNGG	2 cut(s)	630, 675
Bme18I	GGWCC	4 cut(s)	120, 170, 671, 773
BmgT120I	GGNCC	5 cut(s)	120, 170, 671, 677, 773
BmiI	GGNNCC	4 cut(s)	87, 121, 122, 541
BmrFI	CCNGG	2 cut(s)	630, 675
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu1102I	GCTNAGC	1 cut(s)	436
BsaAI	YACGTR	2 cut(s)	569, 728
BsaBI	GATNNNNATC	2 cut(s)	302, 834
BsaHI	GRCGYC	1 cut(s)	620
BsaJI	CCNNGG	5 cut(s)	106, 115, 124, 245, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 629
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	2 cut(s)	302, 834
BseBI	CCWGG	2 cut(s)	630, 675
BseDI	CCNNGG	5 cut(s)	106, 115, 124, 245, 715
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	2 cut(s)	302, 834
BseLI	CCNNNNNNNGG	2 cut(s)	95, 629
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	366, 450, 768
BseRI	GAGGAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	262, 268, 488
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	4 cut(s)	105, 114, 678, 714
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	692
BslFI	GGGAC	2 cut(s)	7, 106
BslI	CCNNNNNNNGG	2 cut(s)	95, 629
BsmFI	GGGAC	2 cut(s)	7, 106
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	4 cut(s)	105, 114, 678, 714
Bsp1286I	GDGCHC	2 cut(s)	88, 692
Bsp143I	GATC	3 cut(s)	378, 525, 702
Bsp1720I	GCTNAGC	1 cut(s)	436
BspACI	CCGC	5 cut(s)	93, 111, 180, 226, 659
BspANI	GGCC	4 cut(s)	105, 114, 678, 714
BspCNI	CTCAG	3 cut(s)	367, 449, 769
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	87, 121, 122, 541
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	5 cut(s)	106, 115, 124, 245, 715
BssMI	GATC	3 cut(s)	378, 525, 702
BssNI	GRCGYC	1 cut(s)	620
BssSI	CACGAG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	630, 675
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	2 cut(s)	374, 596
BstACI	GRCGYC	1 cut(s)	620
BstBAI	YACGTR	2 cut(s)	569, 728
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	5 cut(s)	275, 375, 436, 777, 858
BstDSI	CCRYGG	5 cut(s)	106, 115, 124, 245, 715
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	3 cut(s)	381, 528, 705
BstMBI	GATC	3 cut(s)	378, 525, 702
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 476, 656
BstNI	CCWGG	2 cut(s)	630, 675
BstSCI	CCNGG	2 cut(s)	628, 673
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	262, 268, 488
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	4 cut(s)	105, 114, 678, 714
BtgI	CCRYGG	5 cut(s)	106, 115, 124, 245, 715
BtsCI	GGATG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	657
Cfr13I	GGNCC	5 cut(s)	120, 170, 671, 677, 773
CseI	GACGC	2 cut(s)	476, 628
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	4 cut(s)	635, 764, 839, 850
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	5 cut(s)	275, 375, 436, 777, 858
DpnI	GATC	3 cut(s)	380, 527, 704
DpnII	GATC	3 cut(s)	378, 525, 702
EaeI	YGGCCR	3 cut(s)	103, 112, 712
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	374, 596
EarI	CTCTTC	2 cut(s)	374, 596
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	4 cut(s)	120, 170, 671, 773
Eco52I	CGGCCG	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	410, 462
Eco72I	CACGTG	2 cut(s)	569, 728
EcoO109I	RGGNCCY	3 cut(s)	120, 170, 773
EcoRI	GAATTC	1 cut(s)	720
EcoRII	CCWGG	2 cut(s)	628, 673
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	4 cut(s)	638, 767, 842, 853
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	2 cut(s)	7, 106
FatI	CATG	4 cut(s)	634, 763, 838, 849
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	112, 251, 282, 477
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	4 cut(s)	112, 251, 282, 477
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	4 cut(s)	112, 251, 282, 477
HaeIII	GGCC	4 cut(s)	105, 114, 678, 714
HgaI	GACGC	2 cut(s)	476, 628
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	4 cut(s)	638, 767, 842, 853
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	165, 376, 383
Hpy188III	TCNNGA	3 cut(s)	59, 529, 706
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	2 cut(s)	232, 690
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	3 cut(s)	76, 568, 727
HpyCH4V	TGCA	7 cut(s)	284, 334, 401, 476, 566, 842, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 476, 656
HpyF3I	CTNAG	5 cut(s)	275, 375, 436, 777, 858
HpySE526I	ACGT	3 cut(s)	76, 568, 727
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	4 cut(s)	638, 767, 842, 853
KflI	GGGWCCC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	378, 525, 702
LmnI	GCTCC	2 cut(s)	91, 687
Lsp1109I	GCAGC	3 cut(s)	262, 268, 488
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	76, 568, 727
MaeIII	GTNAC	3 cut(s)	343, 464, 577
MalI	GATC	3 cut(s)	380, 527, 704
MboI	GATC	3 cut(s)	378, 525, 702
MboII	GAAGA	8 cut(s)	156, 278, 361, 471, 535, 606, 613, 796
MhlI	GDGCHC	2 cut(s)	88, 692
MluCI	AATT	3 cut(s)	314, 558, 720
MnlI	CCTC	8 cut(s)	99, 161, 183, 346, 541, 597, 692, 774
MseI	TTAA	2 cut(s)	39, 663
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	630, 675
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	630, 675
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	111, 476, 656
NdeII	GATC	3 cut(s)	378, 525, 702
NlaIII	CATG	4 cut(s)	638, 767, 842, 853
NlaIV	GGNNCC	4 cut(s)	87, 121, 122, 541
NmuCI	GTSAC	3 cut(s)	343, 464, 577
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	1 cut(s)	558
PflFI	GACNNNGTC	1 cut(s)	630
PkrI	GCNGC	4 cut(s)	113, 252, 283, 478
PmaCI	CACGTG	2 cut(s)	569, 728
PmlI	CACGTG	2 cut(s)	569, 728
Ppu21I	YACGTR	2 cut(s)	569, 728
PpuMI	RGGWCCY	3 cut(s)	120, 170, 773
Psp5II	RGGWCCY	3 cut(s)	120, 170, 773
Psp6I	CCWGG	2 cut(s)	628, 673
PspCI	CACGTG	2 cut(s)	569, 728
PspGI	CCWGG	2 cut(s)	628, 673
PspN4I	GGNNCC	4 cut(s)	87, 121, 122, 541
PspPI	GGNCC	5 cut(s)	120, 170, 671, 677, 773
PspPPI	RGGWCCY	3 cut(s)	120, 170, 773
PstI	CTGCAG	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	39, 663
SatI	GCNGC	4 cut(s)	112, 251, 282, 477
Sau3AI	GATC	3 cut(s)	378, 525, 702
Sau96I	GGNCC	5 cut(s)	120, 170, 671, 677, 773
ScrFI	CCNGG	2 cut(s)	630, 675
SduI	GDGCHC	2 cut(s)	88, 692
SexAI	ACCWGGT	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	282
SfiI	GGCCNNNNNGGCC	1 cut(s)	111
SinI	GGWCC	4 cut(s)	120, 170, 671, 773
SmiMI	CAYNNNNRTG	1 cut(s)	639
Sse9I	AATT	3 cut(s)	314, 558, 720
SsiI	CCGC	5 cut(s)	93, 111, 180, 226, 659
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	628, 673
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	3 cut(s)	79, 571, 730
TaqI	TCGA	3 cut(s)	193, 326, 528
TasI	AATT	3 cut(s)	314, 558, 720
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	39, 663
Tru9I	TTAA	2 cut(s)	39, 663
TseFI	GTSAC	3 cut(s)	343, 464, 577
TseI	GCWGC	3 cut(s)	250, 281, 476
Tsp45I	GTSAC	3 cut(s)	343, 464, 577
TspDTI	ATGAA	3 cut(s)	395, 536, 825
TspGWI	ACGGA	1 cut(s)	234
Tth111I	GACNNNGTC	1 cut(s)	630
VpaK11BI	GGWCC	4 cut(s)	120, 170, 671, 773
XapI	RAATTY	1 cut(s)	720
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.