Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

10502440 .. 10507566

Gene Structure 5127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACTACTACTTTGGATATGTCACTTGATGATATGATTAAGAGCAAAAGGGGTAATCGTGATAGAAACAGAGAACGTGGCAGGGGTCCTCCTCGCGGTGGTCGTGGCCGTGGCGGCCGTGGGTCCCGTGGGTCTTTTATGGGTGGAAGAATGACAGGGGCAGTTCGGAGAGGTCCTCCCCCCGCAATAAATACTCGACCATCTGCCCACACCATTGCCAAGTCCTTCCGCAGAACCAAGCGTTTTCCGTGGCAGCCAGATTTGTTTGAAGAAAGCCTTAGAGCTGCAGGGATTTCTGGGATTGAAATCGGCACAAAATTATATGTGTCGAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGACGCATTTGCAGCATTGAAACGCTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAATGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTGATGACGCCCAGACCTGGTCGTGCTGGTGGCTATGCTTTGCCTGCGGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGTGGAATTCCACGTGGTCGTGGTCGTGGGCGTGGGCGTGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCGGTTGATGAACTTGACAAGGAACTTGATAACTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

284

Amino Acids

31.09

Weight (kDa)

11.25

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	107 - 175	4e-14	RNA recognition motif
FoP_duplication	PF13865	223 - 278	8.6e-10	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	1 cut(s)	96
AciI	CCGC	5 cut(s)	96, 114, 183, 229, 662
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	3 cut(s)	106, 115, 715
AcsI	RAATTY	1 cut(s)	723
AcuI	CTGAAG	2 cut(s)	413, 465
AcvI	CACGTG	2 cut(s)	572, 731
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	3 cut(s)	95, 98, 632
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	3 cut(s)	269, 305, 487
AjnI	CCWGG	2 cut(s)	631, 676
AluBI	AGCT	3 cut(s)	284, 391, 443
AluI	AGCT	3 cut(s)	284, 391, 443
Alw21I	GWGCWC	1 cut(s)	695
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	4 cut(s)	106, 115, 679, 715
ApeKI	GCWGC	3 cut(s)	253, 284, 479
ApoI	RAATTY	1 cut(s)	723
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	6 cut(s)	86, 123, 173, 674, 680, 764
AvaII	GGWCC	5 cut(s)	86, 123, 173, 674, 764
BanI	GGYRCC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	696
BbrPI	CACGTG	2 cut(s)	572, 731
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	265, 271, 491
BccI	CCATC	2 cut(s)	208, 506
BceAI	ACGGC	3 cut(s)	93, 102, 702
BciT130I	CCWGG	2 cut(s)	633, 678
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	115, 254, 285, 480
BlpI	GCTNAGC	1 cut(s)	439
BlsI	GCNGC	4 cut(s)	116, 255, 286, 481
Bme1390I	CCNGG	2 cut(s)	633, 678
Bme18I	GGWCC	5 cut(s)	86, 123, 173, 674, 764
BmgT120I	GGNCC	6 cut(s)	86, 123, 173, 674, 680, 764
BmiI	GGNNCC	4 cut(s)	87, 124, 125, 544
BmrFI	CCNGG	2 cut(s)	633, 678
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu1102I	GCTNAGC	1 cut(s)	439
BsaAI	YACGTR	2 cut(s)	572, 731
BsaBI	GATNNNNATC	2 cut(s)	305, 825
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	5 cut(s)	109, 118, 127, 248, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 98, 632
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	2 cut(s)	305, 825
BseBI	CCWGG	2 cut(s)	633, 678
BseDI	CCNNGG	5 cut(s)	109, 118, 127, 248, 718
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	2 cut(s)	305, 825
BseLI	CCNNNNNNNGG	3 cut(s)	95, 98, 632
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	369, 453, 759
BseRI	GAGGAG	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	265, 271, 491
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	108, 117, 681, 717
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	95, 98, 632
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	4 cut(s)	108, 117, 681, 717
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	381, 528, 705
Bsp1720I	GCTNAGC	1 cut(s)	439
BspACI	CCGC	5 cut(s)	96, 114, 183, 229, 662
BspANI	GGCC	4 cut(s)	108, 117, 681, 717
BspCNI	CTCAG	3 cut(s)	370, 452, 760
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	4 cut(s)	87, 124, 125, 544
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	5 cut(s)	109, 118, 127, 248, 718
BssMI	GATC	3 cut(s)	381, 528, 705
BssNI	GRCGYC	1 cut(s)	623
BssSI	CACGAG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	633, 678
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	377, 599
BstACI	GRCGYC	1 cut(s)	623
BstBAI	YACGTR	2 cut(s)	572, 731
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	5 cut(s)	278, 378, 439, 768, 849
BstDSI	CCRYGG	5 cut(s)	109, 118, 127, 248, 718
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	384, 531, 708
BstMBI	GATC	3 cut(s)	381, 528, 705
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 479, 659
BstNI	CCWGG	2 cut(s)	633, 678
BstSCI	CCNGG	2 cut(s)	631, 676
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	265, 271, 491
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	108, 117, 681, 717
BtgI	CCRYGG	5 cut(s)	109, 118, 127, 248, 718
BtsCI	GGATG	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	660
Cfr13I	GGNCC	6 cut(s)	86, 123, 173, 674, 680, 764
CseI	GACGC	2 cut(s)	479, 631
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	2 cut(s)	830, 841
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	5 cut(s)	278, 378, 439, 768, 849
DpnI	GATC	3 cut(s)	383, 530, 707
DpnII	GATC	3 cut(s)	381, 528, 705
EaeI	YGGCCR	3 cut(s)	106, 115, 715
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	377, 599
EarI	CTCTTC	2 cut(s)	377, 599
EclXI	CGGCCG	1 cut(s)	115
Eco47I	GGWCC	5 cut(s)	86, 123, 173, 674, 764
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	413, 465
Eco72I	CACGTG	2 cut(s)	572, 731
EcoO109I	RGGNCCY	4 cut(s)	86, 123, 173, 764
EcoRI	GAATTC	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	631, 676
FaeI	CATG	2 cut(s)	833, 844
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	829, 840
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	115, 254, 285, 480
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	4 cut(s)	115, 254, 285, 480
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	4 cut(s)	115, 254, 285, 480
HaeIII	GGCC	4 cut(s)	108, 117, 681, 717
HgaI	GACGC	2 cut(s)	479, 631
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	2 cut(s)	833, 844
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
Hpy166II	GTNNAC	2 cut(s)	758, 787
Hpy188I	TCNGA	3 cut(s)	168, 379, 386
Hpy188III	TCNNGA	3 cut(s)	59, 532, 709
Hpy8I	GTNNAC	2 cut(s)	758, 787
HpyAV	CCTTC	2 cut(s)	235, 693
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	3 cut(s)	76, 571, 730
HpyCH4V	TGCA	7 cut(s)	287, 337, 404, 479, 569, 833, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 479, 659
HpyF3I	CTNAG	5 cut(s)	278, 378, 439, 768, 849
HpySE526I	ACGT	3 cut(s)	76, 571, 730
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	2 cut(s)	833, 844
KflI	GGGWCCC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	381, 528, 705
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	3 cut(s)	265, 271, 491
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	3 cut(s)	76, 571, 730
MaeIII	GTNAC	4 cut(s)	21, 346, 467, 580
MalI	GATC	3 cut(s)	383, 530, 707
MboI	GATC	3 cut(s)	381, 528, 705
MboII	GAAGA	8 cut(s)	159, 281, 364, 474, 538, 609, 616, 787
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	3 cut(s)	317, 561, 723
MnlI	CCTC	9 cut(s)	99, 102, 164, 186, 349, 544, 600, 695, 765
MseI	TTAA	2 cut(s)	39, 666
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	633, 678
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	633, 678
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	114, 479, 659
NdeII	GATC	3 cut(s)	381, 528, 705
NlaIII	CATG	2 cut(s)	833, 844
NlaIV	GGNNCC	4 cut(s)	87, 124, 125, 544
NmuCI	GTSAC	4 cut(s)	21, 346, 467, 580
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PctI	GAATGC	1 cut(s)	561
PflFI	GACNNNGTC	1 cut(s)	633
PkrI	GCNGC	4 cut(s)	116, 255, 286, 481
PmaCI	CACGTG	2 cut(s)	572, 731
PmlI	CACGTG	2 cut(s)	572, 731
Ppu21I	YACGTR	2 cut(s)	572, 731
PpuMI	RGGWCCY	4 cut(s)	86, 123, 173, 764
Psp5II	RGGWCCY	4 cut(s)	86, 123, 173, 764
Psp6I	CCWGG	2 cut(s)	631, 676
PspCI	CACGTG	2 cut(s)	572, 731
PspGI	CCWGG	2 cut(s)	631, 676
PspN4I	GGNNCC	4 cut(s)	87, 124, 125, 544
PspPI	GGNCC	6 cut(s)	86, 123, 173, 674, 680, 764
PspPPI	RGGWCCY	4 cut(s)	86, 123, 173, 764
PstI	CTGCAG	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	633
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	39, 666
SatI	GCNGC	4 cut(s)	115, 254, 285, 480
Sau3AI	GATC	3 cut(s)	381, 528, 705
Sau96I	GGNCC	6 cut(s)	86, 123, 173, 674, 680, 764
ScrFI	CCNGG	2 cut(s)	633, 678
SduI	GDGCHC	1 cut(s)	695
SexAI	ACCWGGT	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	285
SfiI	GGCCNNNNNGGCC	1 cut(s)	114
SinI	GGWCC	5 cut(s)	86, 123, 173, 674, 764
Sse9I	AATT	3 cut(s)	317, 561, 723
SsiI	CCGC	5 cut(s)	96, 114, 183, 229, 662
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	631, 676
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	3 cut(s)	79, 574, 733
TaqI	TCGA	3 cut(s)	196, 329, 531
TasI	AATT	3 cut(s)	317, 561, 723
TatI	WGTACW	1 cut(s)	589
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	39, 666
Tru9I	TTAA	2 cut(s)	39, 666
TseFI	GTSAC	4 cut(s)	21, 346, 467, 580
TseI	GCWGC	3 cut(s)	253, 284, 479
Tsp45I	GTSAC	4 cut(s)	21, 346, 467, 580
TspDTI	ATGAA	3 cut(s)	398, 539, 816
TspGWI	ACGGA	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	633
VpaK11BI	GGWCC	5 cut(s)	86, 123, 173, 674, 764
XapI	RAATTY	1 cut(s)	723
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.