Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

14981619 .. 14984730

Gene Structure 3112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCTGGAGCATTGAATATGACTCTTGATGAGATTGTTAAGAGGGGTAAAACTGCAAGGTCTGGGGGAAGAGGGATTTCTCGTGGGCGTGGTCGTGGACGTGGTGGTGGTGGAAGAGGAGCTGGACCTGCTAGAAGAGGTCCTCTTGCTGTGAATGCTCGTCCATCATCTTTCACCATTAACAAGCCTGTCCGTAGGGTCAGGAGCTTGCCATGGCAAAGCGGTTTGTTTGAAGATGGCCTAAGAGCTGCCGGGGCATCAGGAGTTGAAGTTGGAACCAGGCTCCATGTTACAAATCTGGACCAGGGTGTGACAAATGAAGATATAAGGGAACTCTTCTCTGAGATTGGGGAGGTAGAGCGTTATGCGATTCATTATGACAAAAATGGGCGTCCAAGTGGCACAGCTGAAGTGGTGTATCCAAGAAGAAGTGATGCATTTCAAGCTCTGAAGAAATATAACAATGTGCTATTGGATGGAAGGCCAATGAGACTTGAGATTTTGGGTGGCAACAATTCTTCCGAGGCTCCTTTATCTGGTCGTGTGAATGTGAATGTCACTGGACTCAATGGAAGGCTGAAGAGGACGGTTGTTATCCAACAAGGAGGAGGAGGGAGAGGAAGAGTTAGAGGTGGGAGAGGAGGAAGAGGTCCAGCTCCTACTGTCAGTCGCCGCCTTCCAATTCATAACCAGCAGGGAGGAGGGATGAGAGGAGGAAGAGGCGGGTTTCGTGCTAGAGGGCGTGGTAATGGTGGCCGTGGTCGTGGTGGTGGAAGAGGAAATGGAAAGAAGCCAGTGGAGAAGTCAGCTGCTGATCTTGACAAAGATCTTGAGAGCTATCACGCTGATGCCATGAACACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

288

Amino Acids

30.43

Weight (kDa)

11.59

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 163	1.1e-13	RNA recognition motif
FoP_duplication	PF13865	223 - 274	2.8e-06	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	3 cut(s)	222, 673, 723
AcoI	YGGCCR	1 cut(s)	754
AcuI	CTGAAG	3 cut(s)	429, 470, 599
AcyI	GRCGYC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	16, 233, 269, 443
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	278, 303
AluBI	AGCT	8 cut(s)	122, 207, 248, 407, 446, 656, 809, 837
AluI	AGCT	8 cut(s)	122, 207, 248, 407, 446, 656, 809, 837
Alw26I	GTCTC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	3 cut(s)	238, 482, 754
ApeKI	GCWGC	2 cut(s)	248, 809
AspS9I	GGNCC	4 cut(s)	125, 140, 301, 650
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	4 cut(s)	125, 140, 301, 650
BauI	CACGAG	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	235, 796
BccI	CCATC	3 cut(s)	172, 230, 470
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	2 cut(s)	280, 305
BciVI	GTATCC	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	132, 735
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	3 cut(s)	249, 673, 810
BlsI	GCNGC	3 cut(s)	250, 674, 811
Bme1390I	CCNGG	3 cut(s)	253, 280, 305
Bme18I	GGWCC	4 cut(s)	125, 140, 301, 650
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	4 cut(s)	125, 140, 301, 650
BmiI	GGNNCC	3 cut(s)	277, 284, 528
BmrFI	CCNGG	3 cut(s)	253, 280, 305
BmsI	GCATC	3 cut(s)	266, 424, 838
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	515, 851
BpuMI	CCSGG	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	5 cut(s)	212, 252, 304, 522, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	565, 794
BseBI	CCWGG	2 cut(s)	280, 305
BseDI	CCNNGG	5 cut(s)	212, 252, 304, 522, 757
BseGI	GGATG	2 cut(s)	481, 711
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	565, 794
BseRI	GAGGAG	6 cut(s)	132, 621, 624, 654, 714, 726
BseXI	GCAGC	2 cut(s)	235, 796
BshFI	GGCC	3 cut(s)	240, 484, 756
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	240, 484, 756
Bsp143I	GATC	2 cut(s)	814, 826
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	3 cut(s)	222, 673, 723
BspANI	GGCC	3 cut(s)	240, 484, 756
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	277, 284, 528
BspMI	ACCTGC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	565, 794
BssECI	CCNNGG	5 cut(s)	212, 252, 304, 522, 757
BssMI	GATC	2 cut(s)	814, 826
BssNI	GRCGYC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	280, 305
Bst4CI	ACNGT	2 cut(s)	589, 664
Bst6I	CTCTTC	9 cut(s)	64, 109, 130, 341, 575, 616, 640, 712, 769
BstACI	GRCGYC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	242, 342
BstDSI	CCRYGG	2 cut(s)	212, 757
BstF5I	GGATG	2 cut(s)	481, 711
BstKTI	GATC	2 cut(s)	817, 829
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	2 cut(s)	814, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 155, 254, 443
BstNI	CCWGG	2 cut(s)	280, 305
BstSCI	CCNGG	3 cut(s)	251, 278, 303
BstV1I	GCAGC	2 cut(s)	235, 796
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	240, 484, 756
BtgI	CCRYGG	2 cut(s)	212, 757
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	481, 711
BtsIMutI	CAGTG	2 cut(s)	558, 801
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr13I	GGNCC	4 cut(s)	125, 140, 301, 650
CseI	GACGC	1 cut(s)	380
CviAII	CATG	3 cut(s)	213, 287, 853
DdeI	CTNAG	2 cut(s)	242, 342
DpnI	GATC	2 cut(s)	816, 828
DpnII	GATC	2 cut(s)	814, 826
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	9 cut(s)	64, 109, 130, 341, 575, 616, 640, 712, 769
EarI	CTCTTC	9 cut(s)	64, 109, 130, 341, 575, 616, 640, 712, 769
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	4 cut(s)	125, 140, 301, 650
Eco57I	CTGAAG	3 cut(s)	429, 470, 599
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	278, 303
EcoT14I	CCWWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	3 cut(s)	216, 290, 856
FaiI	YATR	9 cut(s)	20, 214, 288, 326, 366, 378, 459, 687, 854
FatI	CATG	3 cut(s)	212, 286, 852
FauI	CCCGC	1 cut(s)	716
Fnu4HI	GCNGC	3 cut(s)	249, 673, 810
FokI	GGATG	2 cut(s)	488, 718
Fsp4HI	GCNGC	3 cut(s)	249, 673, 810
FspBI	CTAG	2 cut(s)	132, 735
GluI	GCNGC	3 cut(s)	249, 673, 810
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	240, 484, 756
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	3 cut(s)	216, 290, 856
HinfI	GANTC	3 cut(s)	22, 370, 564
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	343, 450, 523
Hpy188III	TCNNGA	7 cut(s)	6, 26, 202, 261, 299, 818, 830
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	474, 567, 686
HpyCH4III	ACNGT	2 cut(s)	589, 664
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	56, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 155, 254, 443
HpyF3I	CTNAG	2 cut(s)	242, 342
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	216, 290, 856
Kzo9I	GATC	2 cut(s)	814, 826
LmnI	GCTCC	6 cut(s)	8, 119, 204, 288, 532, 661
Lsp1109I	GCAGC	2 cut(s)	235, 796
LweI	GCATC	3 cut(s)	266, 424, 838
MaeI	CTAG	2 cut(s)	132, 735
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	289, 310, 556
MalI	GATC	2 cut(s)	816, 828
MboI	GATC	2 cut(s)	814, 826
MflI	RGATCY	1 cut(s)	826
MluCI	AATT	2 cut(s)	514, 681
MlyI	GAGTC	2 cut(s)	16, 558
MmeI	TCCRAC	2 cut(s)	253, 622
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	3 cut(s)	39, 180, 865
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	407, 809
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	3 cut(s)	253, 280, 305
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	280, 305
MwoI	GCNNNNNNNGC	4 cut(s)	128, 155, 254, 443
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	814, 826
NlaIII	CATG	3 cut(s)	216, 290, 856
NlaIV	GGNNCC	3 cut(s)	277, 284, 528
NmuCI	GTSAC	2 cut(s)	310, 556
NsiI	ATGCAT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	250, 674, 811
PleI	GAGTC	2 cut(s)	16, 558
PpsI	GAGTC	2 cut(s)	16, 558
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	278, 303
PspGI	CCWGG	2 cut(s)	278, 303
PspN4I	GGNNCC	3 cut(s)	277, 284, 528
PspPI	GGNCC	4 cut(s)	125, 140, 301, 650
PspPPI	RGGWCCY	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	2 cut(s)	407, 809
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	3 cut(s)	39, 180, 865
SatI	GCNGC	3 cut(s)	249, 673, 810
Sau3AI	GATC	2 cut(s)	814, 826
Sau96I	GGNCC	4 cut(s)	125, 140, 301, 650
SchI	GAGTC	2 cut(s)	16, 558
ScrFI	CCNGG	3 cut(s)	253, 280, 305
SfaNI	GCATC	3 cut(s)	266, 424, 838
SinI	GGWCC	4 cut(s)	125, 140, 301, 650
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	494, 830
SmoI	CTYRAG	2 cut(s)	494, 830
Sse9I	AATT	2 cut(s)	514, 681
SsiI	CCGC	3 cut(s)	222, 673, 723
SspMI	CTAG	2 cut(s)	132, 735
StyD4I	CCNGG	3 cut(s)	251, 278, 303
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	589, 664
TaiI	ACGT	1 cut(s)	103
TasI	AATT	2 cut(s)	514, 681
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	3 cut(s)	39, 180, 865
Tru9I	TTAA	3 cut(s)	39, 180, 865
TscAI	CASTG	2 cut(s)	565, 801
TseFI	GTSAC	2 cut(s)	310, 556
TseI	GCWGC	2 cut(s)	248, 809
Tsp45I	GTSAC	2 cut(s)	310, 556
TspDTI	ATGAA	3 cut(s)	333, 362, 674
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	565, 801
VpaK11BI	GGWCC	4 cut(s)	125, 140, 301, 650
XspI	CTAG	2 cut(s)	132, 735
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.