Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

24986580 .. 24989424

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0260100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCCTCCATTATCATTGAGCCATACTCCTGGGGCAATATGCACAACCCAATATCTTCCATTGCCATTGTCCAAACTCGTCAACTACTTGGCTGAGAAAACAAGCGTTGTATATCAGACCAATCAAGCCCTTGAGCCTGAAGCTGGAATGACAGTGATTCACCTAATTCTGCAGGCATATTGTTTTGTCACTGCCTTATGGTGCAGCTTGCGTTGGGTGAGGTTTTTGGGGCTGGTTTTGTTTTGGATTGCTCGCTTTGGTCCAAAAGCTTTCTTATCAGCAAACTACTCAGATAGAGCTGGCAACATCAGCTCATTCAATGGATTTACTTTGAAAAAGGGCTCGAATGTCCTCAGCTGGAAATACACATTCCTTCTGCACCCTGGAAGCCACGGCATCGTCGGAGCTCAGGTTCCGCCCGGATGTGACTTGGCTTTTGTGCAGAAGTACTCTAAGGACAAAACGGTAACATTTGTGCTATATGGAGACGGTTCTGCAAATCAGGCACAGCTGTTCGAGGTGCTTAATATCTCTTCGCTTTGGGATTTGCCTGCGATTTTGGTCTGTGAGAATAATCACCATGGAATGGGAATGACAGCGGAGAGCAACCTAGAGTCCTGGGTTGCGGTGGCTTTTGATTCACATGGAAGTATTATGATGCAGATGGATTGGAAGACGGGTAAGCATTTGAGAGGAAGATTGAATAAGGAGATGAAGAACTCGGTGTTGGATCGCAGTTTTTACATTGACAGTGAAGAAGAAGGTGATGAGGAGAAGGGAAACAAAAGCATAGAAGTTCGGAATGGTTCTGATTCTTGGGGCTCGGAAGCCGAGCACCGCCGGCAGCAGCTGATTCAGCCCAGTTCTTACAACACCCAATGGCCTCAAAGTTACAGCTGGACACCAAAGATGGGACAGTGGATTACAAAGGAAACCCAGCTAATAAAAAAGACAGGAACCTGGAAAGCCTGCCCTTTTATCTTAGGGAATGAATACTGTGAAAGATTGGCATACTATGGGATGAGCTCAAATCTGGTAATTTATTTCAAGAAACATCTGCACCAAACCAGTGCTAAAGCAGCTGAAAGCAACTCAAATTGGAGGGGAACATGTTATTTCACTCCCTTGCTTAGAGCATTTTTGGCTGATGCCTATTTGGGAAGACATATGACTGTTGCCTCTTTCTCAATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

398

Amino Acids

44.87

Weight (kDa)

8.63

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	130 - 203	1.4e-23	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	4 cut(s)	416, 599, 626, 838
AclWI	GGATC	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	3 cut(s)	143, 586, 911
AflIII	ACRYGT	1 cut(s)	1109
AgsI	TTSAA	4 cut(s)	319, 334, 703, 1048
AjnI	CCWGG	4 cut(s)	28, 382, 617, 959
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
Alw21I	GWGCWC	3 cut(s)	409, 837, 1028
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	738
AlwNI	CAGNNNCTG	1 cut(s)	850
AoxI	GGCC	1 cut(s)	881
ApeKI	GCWGC	4 cut(s)	204, 844, 847, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	4 cut(s)	152, 229, 569, 776
AvaII	GGWCC	1 cut(s)	260
BanII	GRGCYC	4 cut(s)	344, 409, 824, 1028
BbsI	GAAGAC	2 cut(s)	680, 1168
Bbv12I	GWGCWC	3 cut(s)	409, 837, 1028
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	4 cut(s)	216, 856, 859, 1091
BccI	CCATC	2 cut(s)	658, 904
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	4 cut(s)	30, 384, 619, 961
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	4 cut(s)	205, 845, 848, 1080
BlsI	GCNGC	4 cut(s)	206, 846, 849, 1081
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	5 cut(s)	30, 384, 420, 619, 961
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	414, 958
BmrFI	CCNGG	5 cut(s)	30, 384, 420, 619, 961
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	3 cut(s)	405, 648, 1138
BmuI	ACTGGG	1 cut(s)	855
BpiI	GAAGAC	2 cut(s)	680, 1168
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu10I	CCTNAGC	2 cut(s)	353, 408
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	5 cut(s)	29, 382, 391, 580, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 586, 911
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	2 cut(s)	861, 1068
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	4 cut(s)	30, 384, 619, 961
BseDI	CCNNGG	5 cut(s)	29, 382, 391, 580, 618
BseGI	GGATG	2 cut(s)	428, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	143, 586, 911
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	4 cut(s)	84, 303, 367, 422
BseNI	ACTGG	2 cut(s)	861, 1068
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	4 cut(s)	216, 856, 859, 1091
BseYI	CCCAGC	1 cut(s)	936
BsgI	GTGCAG	4 cut(s)	223, 362, 461, 1043
BshFI	GGCC	1 cut(s)	883
BsiHKAI	GWGCWC	3 cut(s)	409, 837, 1028
BsiSI	CCGG	2 cut(s)	420, 841
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	3 cut(s)	143, 586, 911
BsmAI	GTCTC	1 cut(s)	480
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	927
BsnI	GGCC	1 cut(s)	883
Bsp1286I	GDGCHC	5 cut(s)	344, 409, 824, 837, 1028
Bsp143I	GATC	1 cut(s)	730
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	4 cut(s)	416, 599, 626, 838
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	4 cut(s)	85, 302, 366, 421
BspLI	GGNNCC	2 cut(s)	414, 958
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	738
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	861, 1068
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	5 cut(s)	29, 382, 391, 580, 618
BssMI	GATC	1 cut(s)	730
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	4 cut(s)	30, 384, 619, 961
Bst4CI	ACNGT	7 cut(s)	154, 466, 491, 752, 918, 998, 1174
Bst6I	CTCTTC	1 cut(s)	538
BstC8I	GCNNGC	7 cut(s)	174, 209, 253, 301, 552, 842, 970
BstDEI	CTNAG	7 cut(s)	93, 289, 353, 408, 453, 982, 1130
BstDSI	CCRYGG	2 cut(s)	391, 580
BstF5I	GGATG	2 cut(s)	428, 1026
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	6 cut(s)	309, 503, 841, 856, 1079, 1142
BstNI	CCWGG	4 cut(s)	30, 384, 619, 961
BstNSI	RCATGY	1 cut(s)	1113
BstSCI	CCNGG	5 cut(s)	28, 382, 418, 617, 959
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	216, 856, 859, 1091
BstV2I	GAAGAC	2 cut(s)	680, 1168
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	883
BtgI	CCRYGG	2 cut(s)	391, 580
BtsCI	GGATG	2 cut(s)	428, 1026
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	5 cut(s)	159, 189, 757, 923, 1075
Cac8I	GCNNGC	7 cut(s)	174, 209, 253, 301, 552, 842, 970
CaiI	CAGNNNCTG	1 cut(s)	850
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	3 cut(s)	581, 644, 1110
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	7 cut(s)	93, 289, 353, 408, 453, 982, 1130
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
EciI	GGCGGA	1 cut(s)	405
Ecl136II	GAGCTC	2 cut(s)	407, 1026
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	4 cut(s)	344, 409, 824, 1028
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	2 cut(s)	407, 1026
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	2 cut(s)	407, 1026
EcoRII	CCWGG	4 cut(s)	28, 382, 617, 959
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	4 cut(s)	344, 409, 824, 1028
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	3 cut(s)	584, 647, 1113
FaqI	GGGAC	1 cut(s)	927
FatI	CATG	3 cut(s)	580, 643, 1109
FauNDI	CATATG	1 cut(s)	1167
Fnu4HI	GCNGC	4 cut(s)	205, 845, 848, 1080
FokI	GGATG	2 cut(s)	435, 1033
FriOI	GRGCYC	4 cut(s)	344, 409, 824, 1028
Fsp4HI	GCNGC	4 cut(s)	205, 845, 848, 1080
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	205, 845, 848, 1080
GsaI	CCCAGC	1 cut(s)	940
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	2 cut(s)	420, 841
Hin1II	CATG	3 cut(s)	584, 647, 1113
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	157, 614, 638, 812, 853
HpaII	CCGG	2 cut(s)	420, 841
HphI	GGTGA	4 cut(s)	152, 229, 569, 776
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	6 cut(s)	117, 292, 404, 801, 811, 826
Hpy188III	TCNNGA	1 cut(s)	1048
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	3 cut(s)	383, 755, 769
HpyCH4III	ACNGT	7 cut(s)	154, 466, 491, 752, 918, 998, 1174
HpyCH4V	TGCA	8 cut(s)	42, 172, 204, 379, 442, 497, 661, 1060
HpyF10VI	GCNNNNNNNGC	6 cut(s)	309, 503, 841, 856, 1079, 1142
HpyF3I	CTNAG	7 cut(s)	93, 289, 353, 408, 453, 982, 1130
Hsp92II	CATG	3 cut(s)	584, 647, 1113
KroI	GCCGGC	1 cut(s)	840
KroNI	GCCGGC	1 cut(s)	842
Kzo9I	GATC	1 cut(s)	730
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	216, 856, 859, 1091
LweI	GCATC	3 cut(s)	405, 648, 1138
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	4 cut(s)	187, 425, 466, 890
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MboII	GAAGA	8 cut(s)	47, 525, 685, 708, 727, 767, 770, 1173
MhlI	GDGCHC	5 cut(s)	344, 409, 824, 837, 1028
MluCI	AATT	3 cut(s)	165, 1038, 1096
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	2 cut(s)	382, 708
MnlI	CCTC	9 cut(s)	15, 213, 362, 511, 686, 763, 894, 1095, 1189
MroNI	GCCGGC	1 cut(s)	840
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	6 cut(s)	357, 511, 599, 850, 897, 1082
MspI	CCGG	2 cut(s)	420, 841
MspR9I	CCNGG	5 cut(s)	30, 384, 420, 619, 961
MvaI	CCWGG	4 cut(s)	30, 384, 619, 961
MwoI	GCNNNNNNNGC	6 cut(s)	309, 503, 841, 856, 1079, 1142
NaeI	GCCGGC	1 cut(s)	842
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	580
NdeI	CATATG	1 cut(s)	1167
NdeII	GATC	1 cut(s)	730
NgoMIV	GCCGGC	1 cut(s)	840
NlaIII	CATG	3 cut(s)	584, 647, 1113
NlaIV	GGNNCC	2 cut(s)	414, 958
NmeAIII	GCCGAG	1 cut(s)	856
NmuCI	GTSAC	2 cut(s)	187, 425
NspI	RCATGY	1 cut(s)	1113
PciI	ACATGT	1 cut(s)	1109
PdiI	GCCGGC	1 cut(s)	842
PfeI	GAWTC	4 cut(s)	157, 638, 812, 853
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	206, 846, 849, 1081
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PscI	ACATGT	1 cut(s)	1109
Psp124BI	GAGCTC	2 cut(s)	409, 1028
Psp6I	CCWGG	4 cut(s)	28, 382, 617, 959
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	4 cut(s)	28, 382, 617, 959
PspN4I	GGNNCC	2 cut(s)	414, 958
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	850
PvuII	CAGCTG	5 cut(s)	357, 511, 850, 897, 1082
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacI	GAGCTC	2 cut(s)	409, 1028
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	4 cut(s)	205, 845, 848, 1080
Sau3AI	GATC	1 cut(s)	730
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	5 cut(s)	30, 384, 420, 619, 961
SduI	GDGCHC	5 cut(s)	344, 409, 824, 837, 1028
SfaNI	GCATC	3 cut(s)	405, 648, 1138
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	165, 1038, 1096
SsiI	CCGC	4 cut(s)	416, 599, 626, 838
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	409, 1028
StyD4I	CCNGG	5 cut(s)	28, 382, 418, 617, 959
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	7 cut(s)	154, 466, 491, 752, 918, 998, 1174
TaqI	TCGA	2 cut(s)	344, 516
TasI	AATT	3 cut(s)	165, 1038, 1096
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	4 cut(s)	157, 638, 812, 853
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	5 cut(s)	159, 196, 757, 923, 1075
TseFI	GTSAC	2 cut(s)	187, 425
TseI	GCWGC	4 cut(s)	204, 844, 847, 1079
Tsp45I	GTSAC	2 cut(s)	187, 425
TspDTI	ATGAA	2 cut(s)	728, 1005
TspRI	CASTG	5 cut(s)	159, 196, 757, 923, 1075
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	260
XceI	RCATGY	1 cut(s)	1113
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.