Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Forward (+)

24996486 .. 25012919

Gene Structure 16434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGACCAGACACCTTCCACCGTATCATCAAAGCAGCTCTACATCTACCCCATCCACCTCCCACCCTGTTTATTTGTACAAGGACTTACAGAGGACTAAGCACGGAGCAGCTATGTATAGGACTGTTTTTCTGGCCATACTCATGATGATCACTCTGGGATCTGTTTCTGGAGGTGGTCAGGAATTTGGAGCGTTACACGCCCTGTTTGTGAGTTTCGGTCCCAGTAATTTAAATTGGTCAAGCTTAAATTACTGTGAGTGGGATGGGGTTGGGTGCAATGAAGATGGCTTGGTTGAATCAATTTCTTTAAAGGATAAAAACCTGACCGGGTCATTGTCAGCTTCAATTACGAGCTTATCGTATTTGAAGTTTTTAGATATATCTTACAATAGGTTGACTGGCCCATTTCCAACTCTGCATGAGTTGCGTTCATTATCAATGGTTTGGGCCCAAAATAATTACTTCACTTCTTTCCCAGATGATTTCTTTAATTCTGGCCTCACAGCCTTAACTTTTGTCAATATTAGCCATAACCAGTTCTCACGTTGGCATATTTCTGGTCATTCTGGGGAGTTGTTGAACTTGTATGCCATAAATGCTGGTATTTCCGGAACTTTAGACGTGTTTACTGAGATCAATTTCCCTAGATTAATAAACTTGGATTTGGCAAATAATCATATAATGGGAACCGTGCCATTTGAAATGACAAAATTGCCCTACCTCGGTTTACTGGATCTTTCCCGTAACCATTTGAGTGGTCGATTACCTAAGTTTGGGCCGAAAGTTGTTGTGAGGGTATATGGAAACCAGGACTTAGATACAGATAGTGCCCCTTCCCCTACCCAAACCCAAACCCAAACCCATTCCCATGTCCCTGTGATCCTCATAGTAAGTGGGTGTGTTGGCGGGCTTCTGTTGGTGTTAGCAATTATTACTGGGCTATATGCTTACCTGCATGTAAAGAAAGAGGAGGACCCTGAAGGGAGTTTTGGTGGCAGTCTTGAGAAGTTTTCTGTTGACACTTTGAGTAGGGCAACCGGTGGTTTTAGTGCATCAAATTTATTGGGAGAGGGGGGCTTTTCAAAGGTGTACAAGGGTGTGTTGGAGAACGGCACTGAGATAGCTGTGAAGAGTATAGAAGGGTCTGCTGGAGATGATTTCAAGGCCGAGATTACCTTGCTCTGTGGACTTCGGCATCGGAACTTGGTTGCTCTGCTTGGCTACTGTTGGGAGGAAAACGAAAAGTTGCTGGTTTACGAGTATATGCCTCGGGGGACCCTTAGCAGACATTTGTTCCATTGGCAACAAGAAAACCTGAGGCCTCTGGATTGGCCTACAAGGCTCAGAATTGCCTTGGATGTAGCAAATGGGGTGAATTACCTACACACCGCAAGCAGGGAGGCACTTGTCCACCGGGACTTGAAGCCCTCAAATATATTACTTGGAGATGATATGGAAGCTAAAATTGCGGATTTCGGGTTGGTCCATCCCATTCCCAAAGGAAAAAGCTCAACTTCAATGCCCCTAGCGGGAACACAGGGCTACTGGCCTTATGAATCTATTATGGATCGAAAGGTGTCCCCCAGAGGAGATGTTTACACCTTCGGAGTCATCTTAATGGAGCTCATTAGCGGCAGAAAGTCCATCATAGAGAACCTGCATAATGCTGAGAGATTTTTGCCTACCTGGTTTGCTGACAGGCTCAATATCAAGGACAAAAATGGTAAAATCATTCAGCTGGTTGACGTTTCTAGGCTTAGCGCCATTGTCGATCCTCCCATACTTTCAGATGGCACTTTGTCAACCATTGCTGTTGTGGCTGAGCTTGCACTGCACTGTGTTCACCCTAATCACCACAGAAGGCCCACTATGGCATATGTGTTTGGTGAACTCACGCGGCTGGTTGAGGGCTGGGAACCTCCAGAGCCTGAAGTATCACCTTTTGATAGGGTGGAAGGAGCAGCACTGACACTATCACAGATATTCAGGGAGATCGATGAAACTGATTTGGATGCATCTTCTAGTAGCGGTTTGGTGACAGGAAGAATTTGGAGTGGGGTTATGATTATTATGATTGGAGCAGCTGGTAGGTTATTAGATCTGAAGGAAACAAATTTTGGCTCGGTATGTGTAATAGTGACGCAAAGAAACCCAAGTTCCCCATGCTCTCAGTTACAGGTGCTTCATTTGTTTCTCGATGTTACTTCCATTATGTTCAGCAAATGGTCTCTTGTCCCGGCTTTCGTCCATATTTCTTGGCTTTTGCGCCCACATTCCTTCTATTATCTATCTGATATGAAGTTGTCTTCTATGGTGCTTTTTTGCTCTTGTACTCAACTACTCATGGCTTGGATATTATTTGAAAACAAACTTATCTACTCGAGTAAGGTGAAAAGGTTGTCAAGTTCTTCTAACAATTTGGAGGATAACAATTTGGAGGATAATGCCATGGTTGATGAAAGGGAAATTTTGCAAGTATCTCAAGTTTGGAAATCTCATCAGTCTATCGATTCATTACCGTTTTCAGTCTTCACTTCTATTCAGCCTATTCATTCCGTTTCTACTAGTCATGTAACTGCAGAGATGGACATCCTTCCAACACTGATACTCCCCTTCTTGTTTGGCGATCATGGTATGCCAATGCCTAAAGAATGCGGTCTTCATGCTTCTGAAAGAGTGGATGTCCATCAAGCTTATATTGCACCTCCAATGTCAAGTCTTCTTGGATTGCCATGTCCTGTAAACTTGGTTGGAAGGCTACCCCTTGATTACATAGACATGAAAAAGGCGGATGAAGTTGAAGCTATTCTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

938

Amino Acids

103.97

Weight (kDa)

5.89

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	351 - 624	1.8e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	352 - 557	1.6e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	960, 1665
AccII	CGCG	1 cut(s)	1897
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	9 cut(s)	906, 1389, 1469, 1529, 1632, 1897, 2028, 2655, 2789
AclWI	GGATC	5 cut(s)	166, 741, 874, 1575, 1766
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	5 cut(s)	182, 1057, 2046, 2113, 2466
AcuI	CTGAAG	3 cut(s)	999, 1950, 2123
AfaI	GTAC	3 cut(s)	77, 1091, 2332
AfiI	CCNNNNNNNGG	4 cut(s)	722, 773, 1395, 1529
AflIII	ACRYGT	1 cut(s)	621
AgeI	ACCGGT	1 cut(s)	1037
AhlI	ACTAGT	1 cut(s)	2564
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	807, 1685
AjuI	GAANNNNNNNTTGG	4 cut(s)	972, 1004, 2100, 2132
Alw21I	GWGCWC	1 cut(s)	1626
Alw26I	GTCTC	1 cut(s)	2232
AlwI	GGATC	5 cut(s)	166, 741, 874, 1575, 1766
AlwNI	CAGNNNCTG	1 cut(s)	1928
Ama87I	CYCGRG	2 cut(s)	1269, 2380
Aor13HI	TCCGGA	1 cut(s)	608
ApaI	GGGCCC	1 cut(s)	451
ApeKI	GCWGC	4 cut(s)	33, 107, 1961, 2081
ApoI	RAATTY	5 cut(s)	182, 1057, 2046, 2113, 2466
AseI	ATTAAT	1 cut(s)	650
AsiGI	ACCGGT	1 cut(s)	1037
Asp700I	GAANNNNTTC	1 cut(s)	2805
AspLEI	GCGC	2 cut(s)	1763, 2268
AspS9I	GGNCC	9 cut(s)	218, 401, 447, 448, 776, 973, 1275, 1483, 1863
AsuC2I	CCSGG	3 cut(s)	328, 1415, 2237
AsuHPI	GGTGA	7 cut(s)	1384, 1835, 1844, 1898, 1929, 2047, 2401
AvaI	CYCGRG	2 cut(s)	1269, 2380
AvaII	GGWCC	4 cut(s)	218, 973, 1275, 1483
AxyI	CCTNAGG	1 cut(s)	1316
BaeGI	GKGCMC	2 cut(s)	451, 832
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	451, 1626
BbsI	GAAGAC	4 cut(s)	2298, 2521, 2651, 2711
Bbv12I	GWGCWC	1 cut(s)	1626
BbvI	GCAGC	4 cut(s)	45, 119, 1973, 2093
BccI	CCATC	8 cut(s)	58, 257, 278, 1494, 1652, 1784, 2578, 2694
BceAI	ACGGC	1 cut(s)	1126
BciT130I	CCWGG	2 cut(s)	809, 1687
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	3 cut(s)	328, 1415, 2237
BcoDI	GTCTC	1 cut(s)	2232
BcuI	ACTAGT	1 cut(s)	2564
BfaI	CTAG	6 cut(s)	645, 1526, 1752, 2022, 2565, 2810
BfmI	CTRYAG	1 cut(s)	2577
BfoI	RGCGCY	1 cut(s)	1764
BfuAI	ACCTGC	2 cut(s)	960, 1665
BglI	GCCNNNNNGGC	1 cut(s)	1339
BglII	AGATCT	1 cut(s)	2098
BisI	GCNGC	6 cut(s)	34, 108, 1633, 1898, 1962, 2082
BlpI	GCTNAGC	2 cut(s)	1757, 1821
BlsI	GCNGC	6 cut(s)	35, 109, 1634, 1899, 1963, 2083
Bme1390I	CCNGG	5 cut(s)	328, 809, 1415, 1687, 2237
Bme18I	GGWCC	4 cut(s)	218, 973, 1275, 1483
BmeT110I	CYCGRG	2 cut(s)	1269, 2380
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	9 cut(s)	218, 401, 447, 448, 776, 973, 1275, 1483, 1863
BmiI	GGNNCC	7 cut(s)	220, 449, 688, 975, 1276, 1277, 1917
BmrFI	CCNGG	5 cut(s)	328, 809, 1415, 1687, 2237
BmrI	ACTGGG	2 cut(s)	216, 945
BmsI	GCATC	4 cut(s)	1061, 1204, 2002, 2024
BmuI	ACTGGG	2 cut(s)	216, 945
BpiI	GAAGAC	4 cut(s)	2298, 2521, 2651, 2711
BpmI	CTGGAG	3 cut(s)	189, 1170, 1905
Bpu10I	CCTNAGC	1 cut(s)	1280
Bpu1102I	GCTNAGC	2 cut(s)	1757, 1821
BpuEI	CTTGAG	2 cut(s)	1022, 2466
BpuMI	CCSGG	3 cut(s)	328, 1415, 2237
Bsa29I	ATCGAT	2 cut(s)	1995, 2508
BsaBI	GATNNNNATC	2 cut(s)	2588, 2685
BsaI	GGTCTC	1 cut(s)	2232
BsaJI	CCNNGG	4 cut(s)	721, 1268, 1353, 2448
BsaWI	WCCGGW	2 cut(s)	608, 1037
BsaXI	ACNNNNNCTCC	4 cut(s)	976, 1006, 2592, 2622
Bsc4I	CCNNNNNNNGG	4 cut(s)	722, 773, 1395, 1529
Bse118I	RCCGGY	1 cut(s)	1037
Bse1I	ACTGG	6 cut(s)	222, 403, 535, 735, 940, 1550
Bse21I	CCTNAGG	1 cut(s)	1316
Bse3DI	GCAATG	2 cut(s)	283, 1806
Bse8I	GATNNNNATC	2 cut(s)	2588, 2685
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	809, 1687
BseCI	ATCGAT	2 cut(s)	1995, 2508
BseDI	CCNNGG	4 cut(s)	721, 1268, 1353, 2448
BseGI	GGATG	8 cut(s)	50, 268, 1363, 1486, 2017, 2589, 2686, 2797
BseJI	GATNNNNATC	2 cut(s)	2588, 2685
BseLI	CCNNNNNNNGG	4 cut(s)	722, 773, 1395, 1529
BseMI	GCAATG	2 cut(s)	283, 1806
BseMII	CTCAG	7 cut(s)	621, 1107, 1307, 1357, 1659, 1812, 2183
BseNI	ACTGG	6 cut(s)	222, 403, 535, 735, 940, 1550
BseRI	GAGGAG	2 cut(s)	983, 1602
BseSI	GKGCMC	2 cut(s)	451, 832
BseXI	GCAGC	4 cut(s)	45, 119, 1973, 2093
BseYI	CCCAGC	1 cut(s)	1911
BsgI	GTGCAG	1 cut(s)	1817
Bsh1236I	CGCG	1 cut(s)	1897
BshTI	ACCGGT	1 cut(s)	1037
BshVI	ATCGAT	2 cut(s)	1995, 2508
BsiHKAI	GWGCWC	1 cut(s)	1626
BsiHKCI	CYCGRG	2 cut(s)	1269, 2380
BsiSI	CCGG	5 cut(s)	327, 609, 1038, 1414, 2237
BslFI	GGGAC	6 cut(s)	204, 857, 1288, 1430, 1564, 2219
BslI	CCNNNNNNNGG	4 cut(s)	722, 773, 1395, 1529
BsmAI	GTCTC	1 cut(s)	2232
BsmFI	GGGAC	6 cut(s)	204, 857, 1288, 1430, 1564, 2219
BsmI	GAATGC	1 cut(s)	2657
Bso31I	GGTCTC	1 cut(s)	2232
BsoBI	CYCGRG	2 cut(s)	1269, 2380
Bsp120I	GGGCCC	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	451, 832, 1626
Bsp13I	TCCGGA	1 cut(s)	608
Bsp1407I	TGTACA	2 cut(s)	75, 1089
Bsp1720I	GCTNAGC	2 cut(s)	1757, 1821
Bsp19I	CCATGG	1 cut(s)	2448
BspACI	CCGC	9 cut(s)	906, 1389, 1469, 1529, 1632, 1897, 2028, 2655, 2789
BspCNI	CTCAG	7 cut(s)	622, 1108, 1308, 1356, 1660, 1813, 2182
BspDI	ATCGAT	2 cut(s)	1995, 2508
BspEI	TCCGGA	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	1897
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	7 cut(s)	220, 449, 688, 975, 1276, 1277, 1917
BspMAI	CTGCAG	1 cut(s)	2581
BspMI	ACCTGC	2 cut(s)	960, 1665
BspPI	GGATC	5 cut(s)	166, 741, 874, 1575, 1766
BspTNI	GGTCTC	1 cut(s)	2232
BsrDI	GCAATG	2 cut(s)	283, 1806
BsrFI	RCCGGY	1 cut(s)	1037
BsrGI	TGTACA	2 cut(s)	75, 1089
BsrI	ACTGG	6 cut(s)	222, 403, 535, 735, 940, 1550
BssAI	RCCGGY	1 cut(s)	1037
BssECI	CCNNGG	4 cut(s)	721, 1268, 1353, 2448
BssT1I	CCWWGG	2 cut(s)	1353, 2448
Bst2UI	CCWGG	2 cut(s)	809, 1687
Bst4CI	ACNGT	7 cut(s)	21, 124, 254, 691, 1226, 1838, 2520
Bst6I	CTCTTC	1 cut(s)	1124
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	2 cut(s)	75, 1089
BstC8I	GCNNGC	3 cut(s)	908, 1393, 1827
BstDSI	CCRYGG	1 cut(s)	2448
BstF5I	GGATG	8 cut(s)	50, 268, 1363, 1486, 2017, 2589, 2686, 2797
BstFNI	CGCG	1 cut(s)	1897
BstH2I	RGCGCY	1 cut(s)	1764
BstHHI	GCGC	2 cut(s)	1763, 2268
BstMAI	GTCTC	1 cut(s)	2232
BstNI	CCWGG	2 cut(s)	809, 1687
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	5 cut(s)	326, 807, 1413, 1685, 2235
BstSFI	CTRYAG	1 cut(s)	2577
BstSLI	GKGCMC	2 cut(s)	451, 832
BstUI	CGCG	1 cut(s)	1897
BstV1I	GCAGC	4 cut(s)	45, 119, 1973, 2093
BstV2I	GAAGAC	4 cut(s)	2298, 2521, 2651, 2711
BstX2I	RGATCY	3 cut(s)	158, 733, 2098
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	3 cut(s)	158, 733, 2098
Bsu15I	ATCGAT	2 cut(s)	1995, 2508
Bsu36I	CCTNAGG	1 cut(s)	1316
BsuTUI	ATCGAT	2 cut(s)	1995, 2508
BtgI	CCRYGG	1 cut(s)	2448
BtrI	CACGTC	1 cut(s)	622
BtsCI	GGATG	8 cut(s)	50, 268, 1363, 1486, 2017, 2589, 2686, 2797
BtsI	GCAGTG	1 cut(s)	1829
BtsIMutI	CAGTG	5 cut(s)	1113, 1829, 1834, 1964, 2600
BveI	ACCTGC	2 cut(s)	960, 1665
Cac8I	GCNNGC	3 cut(s)	908, 1393, 1827
CaiI	CAGNNNCTG	1 cut(s)	1928
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	2 cut(s)	1763, 2268
Cfr10I	RCCGGY	1 cut(s)	1037
Cfr13I	GGNCC	9 cut(s)	218, 401, 447, 448, 776, 973, 1275, 1483, 1863
ClaI	ATCGAT	2 cut(s)	1995, 2508
CseI	GACGC	1 cut(s)	2149
CsiI	ACCWGGT	1 cut(s)	1685
Csp6I	GTAC	3 cut(s)	76, 1090, 2331
CspAI	ACCGGT	1 cut(s)	1037
CviQI	GTAC	3 cut(s)	76, 1090, 2331
DraI	TTTAAA	2 cut(s)	231, 309
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	1124
EarI	CTCTTC	1 cut(s)	1124
EciI	GGCGGA	1 cut(s)	2804
Ecl136II	GAGCTC	1 cut(s)	1624
Eco130I	CCWWGG	2 cut(s)	1353, 2448
Eco147I	AGGCCT	1 cut(s)	1321
Eco24I	GRGCYC	2 cut(s)	451, 1626
Eco31I	GGTCTC	1 cut(s)	2232
Eco47I	GGWCC	4 cut(s)	218, 973, 1275, 1483
Eco53kI	GAGCTC	1 cut(s)	1624
Eco57I	CTGAAG	3 cut(s)	999, 1950, 2123
Eco81I	CCTNAGG	1 cut(s)	1316
Eco88I	CYCGRG	2 cut(s)	1269, 2380
EcoICRI	GAGCTC	1 cut(s)	1624
EcoO109I	RGGNCCY	2 cut(s)	973, 1275
EcoRII	CCWGG	2 cut(s)	807, 1685
EcoT14I	CCWWGG	2 cut(s)	1353, 2448
EcoT22I	ATGCAT	1 cut(s)	2017
EcoT38I	GRGCYC	2 cut(s)	451, 1626
ErhI	CCWWGG	2 cut(s)	1353, 2448
FalI	AAGNNNNNCTT	2 cut(s)	1498, 1530
FaqI	GGGAC	6 cut(s)	204, 857, 1288, 1430, 1564, 2219
FauI	CCCGC	2 cut(s)	899, 1522
FauNDI	CATATG	1 cut(s)	1876
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	34, 108, 1633, 1898, 1962, 2082
FokI	GGATG	8 cut(s)	37, 275, 1370, 1473, 2024, 2576, 2693, 2804
FriOI	GRGCYC	2 cut(s)	451, 1626
Fsp4HI	GCNGC	6 cut(s)	34, 108, 1633, 1898, 1962, 2082
FspBI	CTAG	6 cut(s)	645, 1526, 1752, 2022, 2565, 2810
GlaI	GCGC	2 cut(s)	1762, 2267
GluI	GCNGC	6 cut(s)	34, 108, 1633, 1898, 1962, 2082
GsaI	CCCAGC	1 cut(s)	1915
GsuI	CTGGAG	3 cut(s)	189, 1170, 1905
HaeII	RGCGCY	1 cut(s)	1764
HapII	CCGG	5 cut(s)	327, 609, 1038, 1414, 2237
HgaI	GACGC	1 cut(s)	2149
HhaI	GCGC	2 cut(s)	1763, 2268
Hin6I	GCGC	2 cut(s)	1761, 2266
HinP1I	GCGC	2 cut(s)	1761, 2266
HincII	GTYRAC	4 cut(s)	396, 1018, 1744, 1803
HindII	GTYRAC	4 cut(s)	396, 1018, 1744, 1803
HindIII	AAGCTT	2 cut(s)	241, 2691
HinfI	GANTC	4 cut(s)	296, 1556, 1608, 2510
HpaII	CCGG	5 cut(s)	327, 609, 1038, 1414, 2237
HphI	GGTGA	7 cut(s)	1384, 1835, 1844, 1898, 1929, 2047, 2401
Hpy188I	TCNGA	7 cut(s)	1200, 1346, 1607, 1789, 2103, 2293, 2671
Hpy188III	TCNNGA	8 cut(s)	142, 168, 179, 609, 1001, 1325, 1922, 2195
HpyCH4III	ACNGT	7 cut(s)	21, 124, 254, 691, 1226, 1838, 2520
HpyCH4IV	ACGT	3 cut(s)	544, 621, 1746
HpySE526I	ACGT	3 cut(s)	544, 621, 1746
HspAI	GCGC	2 cut(s)	1761, 2266
KflI	GGGWCCC	1 cut(s)	1275
Kpn2I	TCCGGA	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	147
LmnI	GCTCC	5 cut(s)	104, 188, 1621, 1958, 2078
Lsp1109I	GCAGC	4 cut(s)	45, 119, 1973, 2093
LweI	GCATC	4 cut(s)	1061, 1204, 2002, 2024
MabI	ACCWGGT	1 cut(s)	1685
MaeI	CTAG	6 cut(s)	645, 1526, 1752, 2022, 2565, 2810
MaeII	ACGT	3 cut(s)	544, 621, 1746
MaeIII	GTNAC	7 cut(s)	192, 743, 2035, 2137, 2172, 2200, 2572
MboII	GAAGA	9 cut(s)	293, 1141, 2010, 2055, 2298, 2400, 2521, 2651, 2711
MflI	RGATCY	3 cut(s)	158, 733, 2098
MhlI	GDGCHC	3 cut(s)	451, 832, 1626
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	1617
MmeI	TCCRAC	4 cut(s)	434, 1083, 2621, 2731
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	2017
MroI	TCCGGA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	2805
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	7 cut(s)	230, 245, 308, 489, 509, 650, 1616
MslI	CAYNNNNRTG	5 cut(s)	140, 753, 867, 1616, 2777
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	1738, 2084
MspI	CCGG	5 cut(s)	327, 609, 1038, 1414, 2237
MspR9I	CCNGG	5 cut(s)	328, 809, 1415, 1687, 2237
Mva1269I	GAATGC	1 cut(s)	2657
MvaI	CCWGG	2 cut(s)	809, 1687
MvnI	CGCG	1 cut(s)	1897
NciI	CCSGG	3 cut(s)	328, 1415, 2237
NcoI	CCATGG	1 cut(s)	2448
NdeI	CATATG	1 cut(s)	1876
NlaIV	GGNNCC	7 cut(s)	220, 449, 688, 975, 1276, 1277, 1917
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	2 cut(s)	2035, 2137
NsiI	ATGCAT	1 cut(s)	2017
NspI	RCATGY	1 cut(s)	959
PaeR7I	CTCGAG	1 cut(s)	2380
PagI	TCATGA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	1321
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	1 cut(s)	2657
PdmI	GAANNNNTTC	1 cut(s)	2805
PfeI	GAWTC	3 cut(s)	296, 1556, 2510
PflFI	GACNNNGTC	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	1037
PkrI	GCNGC	6 cut(s)	35, 109, 1634, 1899, 1963, 2083
PleI	GAGTC	1 cut(s)	1616
PpsI	GAGTC	1 cut(s)	1616
PpuMI	RGGWCCY	2 cut(s)	973, 1275
PshBI	ATTAAT	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	1626
Psp5II	RGGWCCY	2 cut(s)	973, 1275
Psp6I	CCWGG	2 cut(s)	807, 1685
PspFI	CCCAGC	1 cut(s)	1911
PspGI	CCWGG	2 cut(s)	807, 1685
PspN4I	GGNNCC	7 cut(s)	220, 449, 688, 975, 1276, 1277, 1917
PspOMI	GGGCCC	1 cut(s)	447
PspPI	GGNCC	9 cut(s)	218, 401, 447, 448, 776, 973, 1275, 1483, 1863
PspPPI	RGGWCCY	2 cut(s)	973, 1275
PspXI	VCTCGAGB	1 cut(s)	2380
PstI	CTGCAG	1 cut(s)	2581
PstNI	CAGNNNCTG	1 cut(s)	1928
PsuI	RGATCY	3 cut(s)	158, 733, 2098
PsyI	GACNNNGTC	1 cut(s)	328
PvuII	CAGCTG	2 cut(s)	1738, 2084
RsaI	GTAC	3 cut(s)	77, 1091, 2332
RsaNI	GTAC	3 cut(s)	76, 1090, 2331
RseI	CAYNNNNRTG	5 cut(s)	140, 753, 867, 1616, 2777
SacI	GAGCTC	1 cut(s)	1626
SaqAI	TTAA	7 cut(s)	230, 245, 308, 489, 509, 650, 1616
SatI	GCNGC	6 cut(s)	34, 108, 1633, 1898, 1962, 2082
Sau96I	GGNCC	9 cut(s)	218, 401, 447, 448, 776, 973, 1275, 1483, 1863
SchI	GAGTC	1 cut(s)	1617
ScrFI	CCNGG	5 cut(s)	328, 809, 1415, 1687, 2237
SduI	GDGCHC	3 cut(s)	451, 832, 1626
SexAI	ACCWGGT	1 cut(s)	1685
SfaNI	GCATC	4 cut(s)	1061, 1204, 2002, 2024
SfcI	CTRYAG	1 cut(s)	2577
Sfr274I	CTCGAG	1 cut(s)	2380
SinI	GGWCC	4 cut(s)	218, 973, 1275, 1483
SlaI	CTCGAG	1 cut(s)	2380
SmiI	ATTTAAAT	1 cut(s)	231
SmiMI	CAYNNNNRTG	5 cut(s)	140, 753, 867, 1616, 2777
SmlI	CTYRAG	3 cut(s)	1001, 2380, 2481
SmoI	CTYRAG	3 cut(s)	1001, 2380, 2481
SpeI	ACTAGT	1 cut(s)	2564
SseBI	AGGCCT	1 cut(s)	1321
SsiI	CCGC	9 cut(s)	906, 1389, 1469, 1529, 1632, 1897, 2028, 2655, 2789
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	6 cut(s)	645, 1526, 1752, 2022, 2565, 2810
SstI	GAGCTC	1 cut(s)	1626
StuI	AGGCCT	1 cut(s)	1321
StyD4I	CCNGG	5 cut(s)	326, 807, 1413, 1685, 2235
StyI	CCWWGG	2 cut(s)	1353, 2448
SwaI	ATTTAAAT	1 cut(s)	231
TaaI	ACNGT	7 cut(s)	21, 124, 254, 691, 1226, 1838, 2520
TaiI	ACGT	3 cut(s)	547, 624, 1749
TaqI	TCGA	7 cut(s)	760, 1570, 1770, 1995, 2196, 2381, 2508
TaqII	GACCGA	1 cut(s)	206
TatI	WGTACW	3 cut(s)	75, 1089, 2330
TauI	GCSGC	2 cut(s)	1635, 1900
TfiI	GAWTC	3 cut(s)	296, 1556, 2510
Tru1I	TTAA	7 cut(s)	230, 245, 308, 489, 509, 650, 1616
Tru9I	TTAA	7 cut(s)	230, 245, 308, 489, 509, 650, 1616
TscAI	CASTG	5 cut(s)	1120, 1836, 1841, 1971, 2607
TseFI	GTSAC	2 cut(s)	2035, 2137
TseI	GCWGC	4 cut(s)	33, 107, 1961, 2081
Tsp45I	GTSAC	2 cut(s)	2035, 2137
TspGWI	ACGGA	2 cut(s)	117, 2545
TspRI	CASTG	5 cut(s)	1120, 1836, 1841, 1971, 2607
Tth111I	GACNNNGTC	1 cut(s)	328
VpaK11BI	GGWCC	4 cut(s)	218, 973, 1275, 1483
VspI	ATTAAT	1 cut(s)	650
XapI	RAATTY	5 cut(s)	182, 1057, 2046, 2113, 2466
XceI	RCATGY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1813
XhoI	CTCGAG	1 cut(s)	2380
XmnI	GAANNNNTTC	1 cut(s)	2805
XspI	CTAG	6 cut(s)	645, 1526, 1752, 2022, 2565, 2810
Zsp2I	ATGCAT	1 cut(s)	2017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.