Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

24317324 .. 24322155

Gene Structure 4832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCGACCACTTTGGATATGTCGCTTGATGACATGATTAAGAACAGCAGGGGTAATCGTGAGAGAAATAGAGAACAACGTGGTAGGGGTTCTCGTGGCCGTGGAGGACCACGTGGCTCCTTCAATGCTGGGAGGATGGCCGCTGGAAGGATGGCCAGTGGAAGAATTCCAGCTGGAAGAATGACAGGAGGAGTTCGTAGAGGTCCTCTCACGGTGAATGCTCGGCCATCCTCGTACACCATTGCCAAGTCTACCCGCAGAACCAAGCGTTTCCCATGGCAGCCTGATTTGTTTGAAGACAGCCTTAGAGCTGCAGGGATATCAGGGATTGAGATTGGCACAAAGTTATATGTTTCCAACTTGGACTATGGAGTGACAAATGAGGATATAAGGGAACTTTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTACATTTTGACAAAAATGGTCGCCCAAGTGGTTCAGCTGAGGTGGTTTATACTAGAAGAAGTGATGCATTTGCAGCATTGAAGCGGTATAATAATGTTCTATTGGACGGGAAGCCTATGAAGATTGAGATTGTTGGTGCCACTGCAGGGATGCCTATTTCAGCTCGTGTGAATGTGACAGGCATGCATGGAAGGAAGAAAAGGACTGTTGTAATGACGCCCGGACCTGGTAATGCTGGTGGCTATGCTATGCCTATGGTTAATCGTGGTCCTAGTAGGAGCAGTCGTGGGGGGAACAGAAATGGTCGCGGCAAACCACGTGGGAGTGGCAACGGCAGTGGTTGTGGACGCGGGCGTGGTCGTGGTGGAGAAGGGAGGAAGAAGCCTGTGGAGAAGTCGGTTGATGAACTCGACAAGGAACTCGATAGCTATCACGCAGATAACATGCAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

296

Amino Acids

31.92

Weight (kDa)

10.97

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 184	6.1e-14	RNA recognition motif
FoP_duplication	PF13865	233 - 292	2e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	5, 251
AccII	CGCG	2 cut(s)	741, 783
AciI	CCGC	5 cut(s)	141, 256, 517, 741, 783
AcoI	YGGCCR	4 cut(s)	97, 138, 153, 224
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	440
AcvI	CACGTG	2 cut(s)	113, 752
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	2 cut(s)	236, 435
AfiI	CCNNNNNNNGG	3 cut(s)	147, 579, 659
AgsI	TTSAA	3 cut(s)	124, 296, 514
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	6 cut(s)	173, 311, 418, 470, 596, 861
AluI	AGCT	6 cut(s)	173, 311, 418, 470, 596, 861
AoxI	GGCC	4 cut(s)	97, 138, 153, 224
ApeKI	GCWGC	3 cut(s)	280, 311, 506
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	4 cut(s)	107, 203, 656, 701
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	4 cut(s)	107, 203, 656, 701
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	569
BauI	CACGAG	2 cut(s)	93, 597
BbrPI	CACGTG	2 cut(s)	113, 752
BbsI	GAAGAC	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	292, 298, 518
BccI	CCATC	3 cut(s)	130, 145, 235
BceAI	ACGGC	2 cut(s)	84, 781
BciT130I	CCWGG	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	654
BfaI	CTAG	2 cut(s)	486, 705
BfmI	CTRYAG	2 cut(s)	312, 576
BisI	GCNGC	5 cut(s)	141, 281, 312, 507, 742
BlsI	GCNGC	5 cut(s)	142, 282, 313, 508, 743
Bme1390I	CCNGG	2 cut(s)	654, 660
Bme18I	GGWCC	4 cut(s)	107, 203, 656, 701
BmgT120I	GGNCC	4 cut(s)	107, 203, 656, 701
BmiI	GGNNCC	2 cut(s)	118, 571
BmrFI	CCNGG	2 cut(s)	654, 660
BmsI	GCATC	2 cut(s)	487, 573
BpiI	GAAGAC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	654
BsaAI	YACGTR	2 cut(s)	113, 752
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	100, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 579, 659
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	100, 275
BseGI	GGATG	4 cut(s)	141, 156, 227, 588
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	147, 579, 659
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	396, 462
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	292, 298, 518
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	741, 783
BshFI	GGCC	4 cut(s)	99, 140, 155, 226
BshNI	GGYRCC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	654
BslI	CCNNNNNNNGG	3 cut(s)	147, 579, 659
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	99, 140, 155, 226
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	5 cut(s)	141, 256, 517, 741, 783
BspANI	GGCC	4 cut(s)	99, 140, 155, 226
BspCNI	CTCAG	2 cut(s)	397, 463
BspFNI	CGCG	2 cut(s)	741, 783
BspLI	GGNNCC	2 cut(s)	118, 571
BspMAI	CTGCAG	2 cut(s)	316, 580
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	100, 275
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	650
BssSI	CACGAG	2 cut(s)	93, 597
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	2 cut(s)	93, 597
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	214, 640
BstACI	GRCGYC	1 cut(s)	650
BstBAI	YACGTR	2 cut(s)	113, 752
BstC8I	GCNNGC	2 cut(s)	617, 785
BstDEI	CTNAG	3 cut(s)	305, 405, 471
BstDSI	CCRYGG	2 cut(s)	100, 275
BstF5I	GGATG	4 cut(s)	141, 156, 227, 588
BstFNI	CGCG	2 cut(s)	741, 783
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	2 cut(s)	619, 880
BstSCI	CCNGG	2 cut(s)	652, 658
BstSFI	CTRYAG	2 cut(s)	312, 576
BstUI	CGCG	2 cut(s)	741, 783
BstV1I	GCAGC	3 cut(s)	292, 298, 518
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	99, 140, 155, 226
BtgI	CCRYGG	2 cut(s)	100, 275
BtsCI	GGATG	4 cut(s)	141, 156, 227, 588
BtsI	GCAGTG	2 cut(s)	573, 775
BtsIMutI	CAGTG	3 cut(s)	163, 573, 775
Cac8I	GCNNGC	2 cut(s)	617, 785
Cfr13I	GGNCC	4 cut(s)	107, 203, 656, 701
CseI	GACGC	2 cut(s)	658, 789
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	2 cut(s)	235, 434
CspCI	CAANNNNNGTGG	4 cut(s)	733, 751, 768, 786
CviAII	CATG	5 cut(s)	34, 276, 616, 620, 877
CviQI	GTAC	2 cut(s)	235, 434
DdeI	CTNAG	3 cut(s)	305, 405, 471
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	4 cut(s)	97, 138, 153, 224
Eco130I	CCWWGG	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	4 cut(s)	107, 203, 656, 701
Eco57I	CTGAAG	1 cut(s)	440
Eco72I	CACGTG	2 cut(s)	113, 752
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	2 cut(s)	502, 621
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	5 cut(s)	37, 279, 619, 623, 880
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	5 cut(s)	33, 275, 615, 619, 876
FauI	CCCGC	2 cut(s)	263, 776
FblI	GTMKAC	2 cut(s)	5, 251
Fnu4HI	GCNGC	5 cut(s)	141, 281, 312, 507, 742
FokI	GGATG	4 cut(s)	148, 163, 214, 595
Fsp4HI	GCNGC	5 cut(s)	141, 281, 312, 507, 742
FspBI	CTAG	2 cut(s)	486, 705
GluI	GCNGC	5 cut(s)	141, 281, 312, 507, 742
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	99, 140, 155, 226
HapII	CCGG	1 cut(s)	654
HgaI	GACGC	2 cut(s)	658, 789
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	5 cut(s)	37, 279, 619, 623, 880
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	4 cut(s)	6, 237, 252, 779
Hpy188I	TCNGA	2 cut(s)	406, 413
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	4 cut(s)	6, 237, 252, 779
HpyAV	CCTTC	4 cut(s)	130, 141, 618, 797
HpyCH4III	ACNGT	2 cut(s)	214, 640
HpyCH4IV	ACGT	3 cut(s)	79, 112, 751
HpyCH4V	TGCA	7 cut(s)	314, 431, 500, 506, 578, 619, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	3 cut(s)	305, 405, 471
HpySE526I	ACGT	3 cut(s)	79, 112, 751
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	5 cut(s)	37, 279, 619, 623, 880
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	122, 711
Lsp1109I	GCAGC	3 cut(s)	292, 298, 518
LweI	GCATC	2 cut(s)	487, 573
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	2 cut(s)	486, 705
MaeII	ACGT	3 cut(s)	79, 112, 751
MaeIII	GTNAC	2 cut(s)	373, 607
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	7 cut(s)	174, 189, 308, 501, 565, 640, 823
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	9 cut(s)	98, 126, 182, 194, 216, 241, 376, 466, 801
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	2 cut(s)	502, 621
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	2 cut(s)	39, 693
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	3 cut(s)	143, 173, 470
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	2 cut(s)	654, 660
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	2 cut(s)	741, 783
MwoI	GCNNNNNNNGC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	5 cut(s)	37, 279, 619, 623, 880
NlaIV	GGNNCC	2 cut(s)	118, 571
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	373, 607
NsiI	ATGCAT	2 cut(s)	502, 621
NspI	RCATGY	2 cut(s)	619, 880
PaeI	GCATGC	1 cut(s)	619
PctI	GAATGC	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	142, 282, 313, 508, 743
PmaCI	CACGTG	2 cut(s)	113, 752
PmlI	CACGTG	2 cut(s)	113, 752
Ppu21I	YACGTR	2 cut(s)	113, 752
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	658
PspCI	CACGTG	2 cut(s)	113, 752
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	118, 571
PspPI	GGNCC	4 cut(s)	107, 203, 656, 701
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	2 cut(s)	316, 580
PvuII	CAGCTG	2 cut(s)	173, 470
RsaI	GTAC	2 cut(s)	236, 435
RsaNI	GTAC	2 cut(s)	235, 434
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	39, 693
SatI	GCNGC	5 cut(s)	141, 281, 312, 507, 742
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	4 cut(s)	107, 203, 656, 701
ScrFI	CCNGG	2 cut(s)	654, 660
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	487, 573
SfcI	CTRYAG	2 cut(s)	312, 576
SinI	GGWCC	4 cut(s)	107, 203, 656, 701
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	5 cut(s)	141, 256, 517, 741, 783
SspMI	CTAG	2 cut(s)	486, 705
StyD4I	CCNGG	2 cut(s)	652, 658
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	214, 640
TaiI	ACGT	3 cut(s)	82, 115, 754
TaqI	TCGA	3 cut(s)	5, 843, 855
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	2 cut(s)	143, 744
Tru1I	TTAA	2 cut(s)	39, 693
Tru9I	TTAA	2 cut(s)	39, 693
TscAI	CASTG	3 cut(s)	163, 580, 775
TseFI	GTSAC	2 cut(s)	373, 607
TseI	GCWGC	3 cut(s)	280, 311, 506
Tsp45I	GTSAC	2 cut(s)	373, 607
TspDTI	ATGAA	2 cut(s)	566, 852
TspRI	CASTG	3 cut(s)	163, 580, 775
VpaK11BI	GGWCC	4 cut(s)	107, 203, 656, 701
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	2 cut(s)	619, 880
XmiI	GTMKAC	2 cut(s)	5, 251
XspI	CTAG	2 cut(s)	486, 705
Zsp2I	ATGCAT	2 cut(s)	502, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.