Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

10237786 .. 10251400

Gene Structure 13615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTGACCGAGCCTCCTTCCGCAGAACCAAGCGTTTTCCGTGGCAGCCAGATTTGTTTGAAGAAAGCCTTAGAGCTGCAGGGATTTCAGGGATTGAAATCGGCACAAAATTATATGTGTCGAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGACGCATTTGCAGCATTGAAGCGCTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAATGTGACAGGAGGACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGGTCGTGCTGGTGGCTATGCTTTGCCTGCAGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGCGGAATTCCACGTGGTCGTGGGCGTGGGCGTGGGCGTGGGCGTGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTTGATAACTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

216

Amino Acids

23.82

Weight (kDa)

10.49

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	38 - 106	2.4e-14	RNA recognition motif
FoP_duplication	PF13865	161 - 211	7.2e-10	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	1 cut(s)	513
AciI	CCGC	3 cut(s)	22, 511, 513
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	2 cut(s)	206, 258
AcvI	CACGTG	2 cut(s)	365, 524
AcyI	GRCGYC	1 cut(s)	416
AfeI	AGCGCT	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	62, 98, 280
AjnI	CCWGG	2 cut(s)	424, 469
AluBI	AGCT	3 cut(s)	77, 184, 236
AluI	AGCT	3 cut(s)	77, 184, 236
Alw21I	GWGCWC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	2 cut(s)	472, 508
ApeKI	GCWGC	3 cut(s)	46, 77, 272
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	467, 473, 563
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	467, 563
BanI	GGYRCC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	2 cut(s)	365, 524
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	58, 64, 284
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	2 cut(s)	426, 471
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	78, 453
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	4 cut(s)	47, 78, 273, 511
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	4 cut(s)	48, 79, 274, 512
Bme1390I	CCNGG	2 cut(s)	426, 471
Bme18I	GGWCC	2 cut(s)	467, 563
BmgT120I	GGNCC	3 cut(s)	467, 473, 563
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	426, 471
Bpu1102I	GCTNAGC	1 cut(s)	232
BsaAI	YACGTR	2 cut(s)	365, 524
BsaBI	GATNNNNATC	2 cut(s)	98, 624
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	41, 511
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 475, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse8I	GATNNNNATC	2 cut(s)	98, 624
BseBI	CCWGG	2 cut(s)	426, 471
BseDI	CCNNGG	2 cut(s)	41, 511
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	2 cut(s)	98, 624
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	162, 246, 558
BseXI	GCAGC	3 cut(s)	58, 64, 284
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	474, 510
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	474, 510
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	174, 321, 498
Bsp1720I	GCTNAGC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	22, 511, 513
BspANI	GGCC	2 cut(s)	474, 510
BspCNI	CTCAG	3 cut(s)	163, 245, 559
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	337
BspMAI	CTGCAG	2 cut(s)	82, 457
BspPI	GGATC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	41, 511
BssMI	GATC	3 cut(s)	174, 321, 498
BssNI	GRCGYC	1 cut(s)	416
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	426, 471
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	2 cut(s)	170, 392
BstACI	GRCGYC	1 cut(s)	416
BstBAI	YACGTR	2 cut(s)	365, 524
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	5 cut(s)	71, 171, 232, 567, 648
BstDSI	CCRYGG	2 cut(s)	41, 511
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	3 cut(s)	177, 324, 501
BstMBI	GATC	3 cut(s)	174, 321, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 452
BstNI	CCWGG	2 cut(s)	426, 471
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	424, 469
BstSFI	CTRYAG	2 cut(s)	78, 453
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	58, 64, 284
BsuRI	GGCC	2 cut(s)	474, 510
BtgI	CCRYGG	2 cut(s)	41, 511
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	467, 473, 563
Cfr42I	CCGCGG	1 cut(s)	514
CseI	GACGC	2 cut(s)	272, 424
CsiI	ACCWGGT	1 cut(s)	424
CviAII	CATG	2 cut(s)	629, 640
DdeI	CTNAG	5 cut(s)	71, 171, 232, 567, 648
DpnI	GATC	3 cut(s)	176, 323, 500
DpnII	GATC	3 cut(s)	174, 321, 498
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	170, 392
EarI	CTCTTC	2 cut(s)	170, 392
Eco47I	GGWCC	2 cut(s)	467, 563
Eco47III	AGCGCT	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	206, 258
Eco72I	CACGTG	2 cut(s)	365, 524
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	2 cut(s)	424, 469
FaeI	CATG	2 cut(s)	632, 643
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	2 cut(s)	628, 639
Fnu4HI	GCNGC	4 cut(s)	47, 78, 273, 511
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	47, 78, 273, 511
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	47, 78, 273, 511
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	474, 510
HgaI	GACGC	2 cut(s)	272, 424
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	632, 643
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	557, 586
Hpy188I	TCNGA	2 cut(s)	172, 179
Hpy188III	TCNNGA	2 cut(s)	325, 502
Hpy8I	GTNNAC	2 cut(s)	557, 586
HpyAV	CCTTC	2 cut(s)	28, 486
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	2 cut(s)	364, 523
HpyCH4V	TGCA	8 cut(s)	80, 130, 197, 272, 362, 455, 632, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 452
HpyF3I	CTNAG	5 cut(s)	71, 171, 232, 567, 648
HpySE526I	ACGT	2 cut(s)	364, 523
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	632, 643
HspAI	GCGC	1 cut(s)	283
KspI	CCGCGG	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	174, 321, 498
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	3 cut(s)	58, 64, 284
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	364, 523
MaeIII	GTNAC	4 cut(s)	5, 139, 260, 373
MalI	GATC	3 cut(s)	176, 323, 500
MboI	GATC	3 cut(s)	174, 321, 498
MboII	GAAGA	7 cut(s)	74, 157, 267, 331, 402, 409, 586
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	3 cut(s)	110, 354, 516
MnlI	CCTC	7 cut(s)	25, 142, 337, 374, 393, 488, 564
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	2 cut(s)	236, 513
MspR9I	CCNGG	2 cut(s)	426, 471
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	426, 471
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	272, 452
NdeII	GATC	3 cut(s)	174, 321, 498
NlaIII	CATG	2 cut(s)	632, 643
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	4 cut(s)	5, 139, 260, 373
PctI	GAATGC	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	426
PkrI	GCNGC	4 cut(s)	48, 79, 274, 512
PmaCI	CACGTG	2 cut(s)	365, 524
PmlI	CACGTG	2 cut(s)	365, 524
Ppu21I	YACGTR	2 cut(s)	365, 524
PpuMI	RGGWCCY	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	424, 469
PspCI	CACGTG	2 cut(s)	365, 524
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	424, 469
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	467, 473, 563
PspPPI	RGGWCCY	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	82, 457
PsyI	GACNNNGTC	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	4 cut(s)	47, 78, 273, 511
Sau3AI	GATC	3 cut(s)	174, 321, 498
Sau96I	GGNCC	3 cut(s)	467, 473, 563
ScrFI	CCNGG	2 cut(s)	426, 471
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	8 cut(s)	79, 186, 238, 367, 427, 526, 568, 583
SexAI	ACCWGGT	1 cut(s)	424
SfcI	CTRYAG	2 cut(s)	78, 453
Sfr303I	CCGCGG	1 cut(s)	514
SgrBI	CCGCGG	1 cut(s)	514
SinI	GGWCC	2 cut(s)	467, 563
Sse9I	AATT	3 cut(s)	110, 354, 516
SsiI	CCGC	3 cut(s)	22, 511, 513
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	424, 469
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	2 cut(s)	367, 526
TaqI	TCGA	2 cut(s)	122, 324
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	110, 354, 516
TauI	GCSGC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	4 cut(s)	5, 139, 260, 373
TseI	GCWGC	3 cut(s)	46, 77, 272
Tsp45I	GTSAC	4 cut(s)	5, 139, 260, 373
TspDTI	ATGAA	3 cut(s)	191, 332, 615
TspGWI	ACGGA	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	467, 563
XapI	RAATTY	1 cut(s)	516
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.