Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006312

Physical Location & Seq

Genomic Coordinates Reverse (-)

17966550 .. 17973446

Gene Structure 6897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G160800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTACTGCTTTGGATATGTCGCTTGATGACATGATTAAGAACAGCAGGGGTAATCGTGAGAGAACTAGAGGTGGTAGGGCCCCTCGTGGCCGTGGTGGACCACGTGGGTCCTTTAATGCTGGAAGGATGGCAGCTGGAAGAATTCCAGGTGGAAGAATGACAGGAGCAGTTCGTAGAGGTCCTCTCCCAGTGAATACTCGGCCATCCTCGTATACCATTGCCAAGTCTACCCGCCGAACCAAGCGTTTCCCATGGCAACCTGATTTGTTTGAAGACAGCATTAGAGCTGCGGGGATATCAGGGATTGAAATTGGCACAAAATTATATGTTTCCAACTTGGACTATGGAGTGACAAATGAGGATATAAGGGAACTTTTCTCTGAGATCGGAGAGCTGAAACGATATGCGGTACATTTTGACAAAAATGGCCGTCCAAGTGGTTCTGCTGAAGTGGTTTATACTAGACGAAGTGATGCATTTGCAGCATTGAAGCGGTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATTGAGATTGTTGGTGCCAATGCAGGGATGCCTATTTCAGCTCGTGTGAATGTGACAGGAGTGCATGGAAGGAAGAAAAGGACTGTTGTAATGACGCCTGGACCTGGTCGTGGTGGTGGCTATGCTTTGCCTATGGTTAATCGTGGTTCTGGCAGGAGCAGTCGTGGAGGGATCAGAAATGGTCGCGGCCAACCACGTGGGAGTGGGAGCGGCCGTGGGCGTGGTCGCAGTGGGCCAGGGAGGAAGAAGCCCGTTGATAAGTCAGTTGATGAACTTGACAAGGAACTCGATAGCTACCATGCAGATGCCATGCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

285

Amino Acids

30.66

Weight (kDa)

11.14

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66260 AT1G66260 AT5G37720 AT5G37720
fragaria_vesca	FvH4_1g28810 FvH4_1g28810
malus_domestica	MD09G1263100.v1.1 MD17G1258100.v1.1 MD17G1258200.v1.1
prunus_persica	Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1 Prupe.3G160800_v2.0.a1
pyrus_communis	pycom09g17740 pycom17g26010
rosa_chinensis	RchiOBHm_Chr3g0493301 RchiOBHm_Chr3g0493311
rosa_laevigata	RLG00000022720
rosa_multiflora	Rmu_sc0006010.1_g000010 Rmu_sc0008988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391650
rosa_rugosa	Rorug03G0260100 Rorug03G0260200
rosa_samantha	Rh3AG309400 Rh3BG345600 Rh3CG342700 Rh3DG344400
rosa_wichuraiana	Rw3G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	744
AccI	GTMKAC	3 cut(s)	5, 215, 230
AccII	CGCG	1 cut(s)	720
AciI	CCGC	6 cut(s)	235, 293, 410, 496, 720, 744
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	5 cut(s)	91, 203, 430, 721, 745
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	471
AcvI	CACGTG	2 cut(s)	107, 731
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	558, 638, 644
AgsI	TTSAA	3 cut(s)	275, 311, 493
AjnI	CCWGG	4 cut(s)	148, 631, 637, 769
AluBI	AGCT	5 cut(s)	137, 290, 397, 575, 828
AluI	AGCT	5 cut(s)	137, 290, 397, 575, 828
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	7 cut(s)	81, 91, 203, 430, 721, 745, 767
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	3 cut(s)	134, 290, 485
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	7 cut(s)	81, 82, 101, 111, 182, 635, 767
AvaII	GGWCC	4 cut(s)	101, 111, 182, 635
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	85
BauI	CACGAG	2 cut(s)	87, 576
BbrPI	CACGTG	2 cut(s)	107, 731
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	146, 277, 497
BccI	CCATC	3 cut(s)	124, 214, 512
BceAI	ACGGC	3 cut(s)	78, 417, 732
BciT130I	CCWGG	4 cut(s)	150, 633, 639, 771
BfaI	CTAG	2 cut(s)	69, 465
BisI	GCNGC	5 cut(s)	135, 291, 486, 721, 745
BlsI	GCNGC	5 cut(s)	136, 292, 487, 722, 746
Bme1390I	CCNGG	4 cut(s)	150, 633, 639, 771
Bme18I	GGWCC	4 cut(s)	101, 111, 182, 635
BmgT120I	GGNCC	7 cut(s)	81, 82, 101, 111, 182, 635, 767
BmiI	GGNNCC	4 cut(s)	83, 84, 112, 550
BmrFI	CCNGG	4 cut(s)	150, 633, 639, 771
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	466, 552, 829
BmuI	ACTGGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BsaAI	YACGTR	2 cut(s)	107, 731
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	4 cut(s)	94, 254, 748, 770
BsaXI	ACNNNNNCTCC	4 cut(s)	682, 712, 733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 638, 644
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	4 cut(s)	150, 633, 639, 771
BseDI	CCNNGG	4 cut(s)	94, 254, 748, 770
BseGI	GGATG	4 cut(s)	135, 206, 523, 567
BseLI	CCNNNNNNNGG	3 cut(s)	558, 638, 644
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	85
BseX3I	CGGCCG	1 cut(s)	745
BseXI	GCAGC	3 cut(s)	146, 277, 497
Bsh1236I	CGCG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	7 cut(s)	83, 93, 205, 432, 723, 747, 769
BshNI	GGYRCC	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	748
BslI	CCNNNNNNNGG	3 cut(s)	558, 638, 644
BsnI	GGCC	7 cut(s)	83, 93, 205, 432, 723, 747, 769
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	387, 705
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	6 cut(s)	235, 293, 410, 496, 720, 744
BspANI	GGCC	7 cut(s)	83, 93, 205, 432, 723, 747, 769
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	4 cut(s)	83, 84, 112, 550
BspPI	GGATC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	94, 254, 748, 770
BssMI	GATC	2 cut(s)	387, 705
BssNAI	GTATAC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	629
BssSI	CACGAG	2 cut(s)	87, 576
BssT1I	CCWWGG	1 cut(s)	254
Bst1107I	GTATAC	1 cut(s)	216
Bst2BI	CACGAG	2 cut(s)	87, 576
Bst2UI	CCWGG	4 cut(s)	150, 633, 639, 771
Bst4CI	ACNGT	1 cut(s)	619
BstACI	GRCGYC	1 cut(s)	629
BstBAI	YACGTR	2 cut(s)	107, 731
BstDEI	CTNAG	2 cut(s)	384, 852
BstDSI	CCRYGG	3 cut(s)	94, 254, 748
BstF5I	GGATG	4 cut(s)	135, 206, 523, 567
BstFNI	CGCG	1 cut(s)	720
BstKTI	GATC	2 cut(s)	390, 708
BstMBI	GATC	2 cut(s)	387, 705
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	4 cut(s)	150, 633, 639, 771
BstSCI	CCNGG	4 cut(s)	148, 631, 637, 769
BstSLI	GKGCMC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	146, 277, 497
BstV2I	GAAGAC	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstZ17I	GTATAC	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	745
BsuRI	GGCC	7 cut(s)	83, 93, 205, 432, 723, 747, 769
BtgI	CCRYGG	3 cut(s)	94, 254, 748
BtsCI	GGATG	4 cut(s)	135, 206, 523, 567
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	2 cut(s)	198, 769
Cfr13I	GGNCC	7 cut(s)	81, 82, 101, 111, 182, 635, 767
CseI	GACGC	1 cut(s)	637
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	5 cut(s)	34, 255, 599, 833, 844
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	384, 852
DpnI	GATC	2 cut(s)	389, 707
DpnII	GATC	2 cut(s)	387, 705
EaeI	YGGCCR	5 cut(s)	91, 203, 430, 721, 745
EagI	CGGCCG	1 cut(s)	745
EclXI	CGGCCG	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	4 cut(s)	101, 111, 182, 635
Eco52I	CGGCCG	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	471
Eco72I	CACGTG	2 cut(s)	107, 731
EcoO109I	RGGNCCY	4 cut(s)	81, 82, 111, 182
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	4 cut(s)	148, 631, 637, 769
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	5 cut(s)	37, 258, 602, 836, 847
FatI	CATG	5 cut(s)	33, 254, 598, 832, 843
FauI	CCCGC	2 cut(s)	242, 286
FblI	GTMKAC	3 cut(s)	5, 215, 230
Fnu4HI	GCNGC	5 cut(s)	135, 291, 486, 721, 745
FokI	GGATG	4 cut(s)	142, 193, 530, 574
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	135, 291, 486, 721, 745
FspBI	CTAG	2 cut(s)	69, 465
GluI	GCNGC	5 cut(s)	135, 291, 486, 721, 745
HaeIII	GGCC	7 cut(s)	83, 93, 205, 432, 723, 747, 769
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	5 cut(s)	37, 258, 602, 836, 847
Hpy166II	GTNNAC	4 cut(s)	6, 101, 216, 231
Hpy188I	TCNGA	3 cut(s)	385, 392, 710
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	4 cut(s)	6, 101, 216, 231
HpyAV	CCTTC	2 cut(s)	120, 597
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	2 cut(s)	106, 730
HpyCH4V	TGCA	6 cut(s)	479, 485, 557, 598, 836, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	384, 852
HpySE526I	ACGT	2 cut(s)	106, 730
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	5 cut(s)	37, 258, 602, 836, 847
Kzo9I	GATC	2 cut(s)	387, 705
LmnI	GCTCC	3 cut(s)	167, 690, 741
Lsp1109I	GCAGC	3 cut(s)	146, 277, 497
LweI	GCATC	3 cut(s)	466, 552, 829
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	2 cut(s)	69, 465
MaeII	ACGT	2 cut(s)	106, 730
MaeIII	GTNAC	2 cut(s)	352, 586
MalI	GATC	2 cut(s)	389, 707
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	2 cut(s)	387, 705
MboII	GAAGA	6 cut(s)	153, 168, 287, 544, 619, 790
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	3 cut(s)	144, 312, 323
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	65, 96, 173, 195, 220, 355, 695, 768
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	3 cut(s)	39, 117, 672
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	4 cut(s)	150, 633, 639, 771
MvaI	CCWGG	4 cut(s)	150, 633, 639, 771
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	387, 705
NlaIII	CATG	5 cut(s)	37, 258, 602, 836, 847
NlaIV	GGNNCC	4 cut(s)	83, 84, 112, 550
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	352, 586
NsiI	ATGCAT	1 cut(s)	481
PflFI	GACNNNGTC	1 cut(s)	639
PkrI	GCNGC	5 cut(s)	136, 292, 487, 722, 746
PmaCI	CACGTG	2 cut(s)	107, 731
PmlI	CACGTG	2 cut(s)	107, 731
Ppu21I	YACGTR	2 cut(s)	107, 731
PpuMI	RGGWCCY	2 cut(s)	111, 182
Psp5II	RGGWCCY	2 cut(s)	111, 182
Psp6I	CCWGG	4 cut(s)	148, 631, 637, 769
PspCI	CACGTG	2 cut(s)	107, 731
PspGI	CCWGG	4 cut(s)	148, 631, 637, 769
PspN4I	GGNNCC	4 cut(s)	83, 84, 112, 550
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	7 cut(s)	81, 82, 101, 111, 182, 635, 767
PspPPI	RGGWCCY	2 cut(s)	111, 182
PsyI	GACNNNGTC	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	39, 117, 672
SatI	GCNGC	5 cut(s)	135, 291, 486, 721, 745
Sau3AI	GATC	2 cut(s)	387, 705
Sau96I	GGNCC	7 cut(s)	81, 82, 101, 111, 182, 635, 767
ScrFI	CCNGG	4 cut(s)	150, 633, 639, 771
SduI	GDGCHC	1 cut(s)	85
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	466, 552, 829
SinI	GGWCC	4 cut(s)	101, 111, 182, 635
SmiMI	CAYNNNNRTG	1 cut(s)	837
Sse9I	AATT	3 cut(s)	144, 312, 323
SsiI	CCGC	6 cut(s)	235, 293, 410, 496, 720, 744
SspMI	CTAG	2 cut(s)	69, 465
StyD4I	CCNGG	4 cut(s)	148, 631, 637, 769
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	2 cut(s)	109, 733
TaqI	TCGA	1 cut(s)	822
TasI	AATT	3 cut(s)	144, 312, 323
TauI	GCSGC	2 cut(s)	723, 747
Tru1I	TTAA	3 cut(s)	39, 117, 672
Tru9I	TTAA	3 cut(s)	39, 117, 672
TscAI	CASTG	2 cut(s)	198, 769
TseFI	GTSAC	2 cut(s)	352, 586
TseI	GCWGC	3 cut(s)	134, 290, 485
Tsp45I	GTSAC	2 cut(s)	352, 586
TspDTI	ATGAA	2 cut(s)	545, 819
TspRI	CASTG	2 cut(s)	198, 769
Tth111I	GACNNNGTC	1 cut(s)	639
VpaK11BI	GGWCC	4 cut(s)	101, 111, 182, 635
XapI	RAATTY	1 cut(s)	144
XmiI	GTMKAC	3 cut(s)	5, 215, 230
XspI	CTAG	2 cut(s)	69, 465
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.