Rh3AG309400

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006312
Physical Location & Seq
Forward (+)
38861592 .. 38864516
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG309400.1

Sequence Viewer

Length: 342 bp
ATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAATGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGGTCATGCTGGTGGCTATGCTTTGCCTGCGGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGTGGAATTCCACGTGGTCGTGGTCGTGGTCGTGGGCGTGGGCGTGGGCATGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTTGATAGCTATCATGCAGAAGCCATGCAAACTTAG

Protein Analysis

113

Amino Acids

12.06

Weight (kDa)

11.42

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FoP_duplication PF13865 54 - 109 2.1e-10 C-terminal duplication domain of Friend of PRMT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 201
AcvI CACGTG 2 cut(s) 50, 209
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 49
AjnI CCWGG 2 cut(s) 109, 154
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 157, 193
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 152, 158, 254
AvaII GGWCC 2 cut(s) 152, 254
BanI GGYRCC 1 cut(s) 20
BauI CACGAG 1 cut(s) 174
BbrPI CACGTG 2 cut(s) 50, 209
Bbv12I GWGCWC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 111, 156
BfaI CTAG 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 111, 156
Bme18I GGWCC 2 cut(s) 152, 254
BmgT120I GGNCC 3 cut(s) 152, 158, 254
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 111, 156
BsaAI YACGTR 2 cut(s) 50, 209
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 111, 156
BseDI CCNNGG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 159, 195
BshNI GGYRCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 110
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 159, 195
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 6, 183
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 159, 195
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 6, 183
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 111, 156
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 101
BstBAI YACGTR 2 cut(s) 50, 209
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 258, 339
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 2 cut(s) 9, 186
BstMBI GATC 2 cut(s) 6, 183
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 111, 156
BstSCI CCNGG 2 cut(s) 109, 154
BsuRI GGCC 2 cut(s) 159, 195
BtgI CCRYGG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 152, 158, 254
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 68
CviAII CATG 4 cut(s) 116, 245, 320, 331
CviJI RGCY 5 cut(s) 126, 159, 195, 315, 329
CviKI_1 RGCY 5 cut(s) 126, 159, 195, 315, 329
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 258, 339
DpnI GATC 2 cut(s) 8, 185
DpnII GATC 2 cut(s) 6, 183
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 152, 254
Eco72I CACGTG 2 cut(s) 50, 209
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 109, 154
FaeI CATG 4 cut(s) 119, 248, 323, 334
FaiI YATR 5 cut(s) 117, 129, 246, 321, 332
FatI CATG 4 cut(s) 115, 244, 319, 330
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 159, 195
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 119, 248, 323, 334
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 10, 187
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 49, 208
HpyCH4V TGCA 3 cut(s) 47, 323, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 258, 339
HpySE526I ACGT 2 cut(s) 49, 208
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 119, 248, 323, 334
Kzo9I GATC 2 cut(s) 6, 183
LmnI GCTCC 1 cut(s) 168
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 49, 208
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 8, 185
MboI GATC 2 cut(s) 6, 183
MboII GAAGA 4 cut(s) 16, 87, 94, 277
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 2 cut(s) 39, 201
MnlI CCTC 4 cut(s) 22, 78, 173, 255
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 111, 156
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 111, 156
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 2 cut(s) 6, 183
NlaIII CATG 4 cut(s) 119, 248, 323, 334
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 58
PctI GAATGC 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 111
PmaCI CACGTG 2 cut(s) 50, 209
PmlI CACGTG 2 cut(s) 50, 209
Ppu21I YACGTR 2 cut(s) 50, 209
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 109, 154
PspCI CACGTG 2 cut(s) 50, 209
PspGI CCWGG 2 cut(s) 109, 154
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 152, 158, 254
PspPPI RGGWCCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 6, 183
Sau96I GGNCC 3 cut(s) 152, 158, 254
ScrFI CCNGG 2 cut(s) 111, 156
SduI GDGCHC 1 cut(s) 173
SetI ASST 6 cut(s) 52, 112, 211, 259, 274, 317
SexAI ACCWGGT 1 cut(s) 109
SinI GGWCC 2 cut(s) 152, 254
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 39, 201
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 109, 154
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 52, 211
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 39, 201
TatI WGTACW 1 cut(s) 67
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 17, 306
Tth111I GACNNNGTC 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 152, 254
XapI RAATTY 1 cut(s) 201
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.