Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Reverse (-)

25668610 .. 25670345

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACAGAACTCAACTTCCACCTCCTCCCAATAATCTCCGATCGCTTCACGACGACGACGACAACATCACCGTCGTTCTCGTCACATTCTTCTTCTTCTTCTTCTCTTCTCTCTTTCACCAAACGAAGACGAAAACACCAACCTTTAGTATCATCCATACGCATGGAACAGTCACGGTCACGGAATCGGAAAGACAAAGTCGTCGTCATTTTAGGAGCAACCGGCGCCGGAAAATCAAGACTTTCCGTCGATCTCGCTACTCGTTTCCCTTCAGAGATCATAAACTCCGATAAAATCCAAGTCTACGAAGGATTAGAGATCACAACGAATCAGATTACGTTACAAGACCGTCGCGGCGTTCCTCACCATCTCCTCGGCGTCATCAACCCCGAACACGGCGAACTAACCGCCGGAGAGTTTCGCTCCGCCGCTTCAAACGTCGTCAAAGAGATAACTTCTCGTCAAAAGGTTCCGATTATCGCCGGTGGATCTAACTCTTTCGTCCACGCACTCTTAGCTCAACGATTCGACCCAAAGTTCGATCCTTTTTCATCCGGGTCGTGTTTAATCAGCTCCGATTTGCGTTACGAGTGTTGTTTCATCTGGGTCGATGTATCGGAGACTGTTCTCTACGAGTATCTTCTCAGAAGAGTCGACGAAATGATGGATTCAGGTATGTTCGAAGAGCTGTCTAGATTCTACGACCCGGTTAAATCCGGTTTAGAAACCCGGTTTGGGATTAGGAAAGCTATAGGTGTACCGGAGTTTGACGGTTACTTCAAAGAGTATCCACCGGAGAAGAAGATGATAAAGTGGGACGCTTTAAGAAAAGCGGCGTACGATAAGGCGGTTGATGATATCAAAAGGAACACGTGGACGTTAGCGAAGAGACAAGTGAAGAAGATTGAGATGCTAAAAGACGCTGGTTGGGAAATAGAAAGAGTTGATGCAACGGCGTCGTTTAAAGCAGTGATGATGAAGAGTTCGTCGGAGAAGAAGTGGAGAGAGAATTGGGAAGAGCAAGTGTTGGAGCCAAGCGTAAAGATTGTGAAGCGGCATTTGGTGCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

357

Amino Acids

40.76

Weight (kDa)

9.3

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	66 - 176	1.6e-07	Isopentenyl transferase
IPPT	PF01715	100 - 175	2.3e-19	IPP transferase
IPPT	PF01715	195 - 300	4.2e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	2 cut(s)	303, 654
AccII	CGCG	1 cut(s)	354
AciI	CCGC	7 cut(s)	354, 408, 426, 429, 833, 848, 1054
AclWI	GGATC	2 cut(s)	496, 536
AcuI	CTGAAG	1 cut(s)	255
AcvI	CACGTG	1 cut(s)	873
AcyI	GRCGYC	3 cut(s)	225, 378, 956
AfaI	GTAC	2 cut(s)	759, 839
AfiI	CCNNNNNNNGG	2 cut(s)	395, 735
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	2 cut(s)	435, 781
AhdI	GACNNNNNGTC	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	3 cut(s)	717, 749, 1043
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	4 cut(s)	518, 573, 688, 749
AluI	AGCT	4 cut(s)	518, 573, 688, 749
Alw26I	GTCTC	2 cut(s)	614, 883
AlwI	GGATC	2 cut(s)	496, 536
ArsI	GACNNNNNNTTYG	4 cut(s)	189, 221, 521, 553
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	3 cut(s)	556, 707, 730
AsuHPI	GGTGA	3 cut(s)	60, 109, 356
AsuII	TTCGAA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	133
BccI	CCATC	2 cut(s)	375, 658
BceAI	ACGGC	2 cut(s)	412, 969
BcgI	CGANNNNNNTGC	2 cut(s)	939, 973
BciVI	GTATCC	1 cut(s)	798
BcnI	CCSGG	3 cut(s)	556, 707, 730
BcoDI	GTCTC	2 cut(s)	614, 883
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	798
BisI	GCNGC	4 cut(s)	355, 429, 834, 1055
BlsI	GCNGC	4 cut(s)	356, 430, 835, 1056
Bme1390I	CCNGG	3 cut(s)	556, 707, 730
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	226, 471, 1032
BmrFI	CCNGG	3 cut(s)	556, 707, 730
BmsI	GCATC	2 cut(s)	900, 937
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu14I	TTCGAA	1 cut(s)	681
BpuMI	CCSGG	3 cut(s)	556, 707, 730
BsaAI	YACGTR	1 cut(s)	873
BsaHI	GRCGYC	3 cut(s)	225, 378, 956
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	3 cut(s)	716, 760, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 735
Bse118I	RCCGGY	2 cut(s)	221, 482
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	152, 551
BseLI	CCNNNNNNNGG	2 cut(s)	395, 735
BseMII	CTCAG	1 cut(s)	658
BseRI	GAGGAG	2 cut(s)	14, 362
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	43
BsiWI	CGTACG	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	395, 735
BsmAI	GTCTC	2 cut(s)	614, 883
BsmFI	GGGAC	1 cut(s)	830
Bsp119I	TTCGAA	1 cut(s)	681
Bsp143I	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
BspACI	CCGC	7 cut(s)	354, 408, 426, 429, 833, 848, 1054
BspCNI	CTCAG	1 cut(s)	657
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	226, 471, 1032
BspPI	GGATC	2 cut(s)	496, 536
BspQI	GCTCTTC	2 cut(s)	678, 1011
BspT104I	TTCGAA	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	224
BsrFI	RCCGGY	2 cut(s)	221, 482
BssAI	RCCGGY	2 cut(s)	221, 482
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
BssNI	GRCGYC	3 cut(s)	225, 378, 956
Bst4CI	ACNGT	6 cut(s)	72, 171, 177, 350, 625, 773
Bst6I	CTCTTC	6 cut(s)	111, 643, 678, 881, 974, 1011
BstACI	GRCGYC	3 cut(s)	225, 378, 956
BstAPI	GCANNNNNTGC	1 cut(s)	1063
BstBAI	YACGTR	1 cut(s)	873
BstBI	TTCGAA	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	514, 644
BstF5I	GGATG	2 cut(s)	152, 551
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	6 cut(s)	43, 253, 279, 321, 491, 544
BstMAI	GTCTC	2 cut(s)	614, 883
BstMBI	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 515, 1063
BstSCI	CCNGG	3 cut(s)	554, 705, 728
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	798
BtsCI	GGATG	2 cut(s)	152, 551
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	1 cut(s)	975
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	221, 482
CseI	GACGC	4 cut(s)	367, 827, 929, 945
Csp6I	GTAC	2 cut(s)	758, 838
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	5 cut(s)	518, 573, 688, 749, 1033
CviKI_1	RGCY	5 cut(s)	518, 573, 688, 749, 1033
CviQI	GTAC	2 cut(s)	758, 838
DdeI	CTNAG	2 cut(s)	514, 644
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	6 cut(s)	42, 252, 278, 320, 490, 543
DpnII	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
DraI	TTTAAA	1 cut(s)	964
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	6 cut(s)	111, 643, 678, 881, 974, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	6 cut(s)	111, 643, 678, 881, 974, 1011
EciI	GGCGGA	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	255
Eco72I	CACGTG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	859
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	158, 164, 281, 677, 752
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	303, 654
Fnu4HI	GCNGC	4 cut(s)	355, 429, 834, 1055
FokI	GGATG	2 cut(s)	139, 538
Fsp4HI	GCNGC	4 cut(s)	355, 429, 834, 1055
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	355, 429, 834, 1055
HaeII	RGCGCY	1 cut(s)	228
HgaI	GACGC	4 cut(s)	367, 827, 929, 945
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	3 cut(s)	225, 378, 956
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	6 cut(s)	184, 328, 525, 651, 668, 696
HphI	GGTGA	3 cut(s)	60, 109, 356
Hpy166II	GTNNAC	5 cut(s)	304, 505, 655, 758, 876
Hpy188III	TCNNGA	3 cut(s)	49, 237, 693
Hpy8I	GTNNAC	5 cut(s)	304, 505, 655, 758, 876
HpyAV	CCTTC	2 cut(s)	279, 302
HpyCH4III	ACNGT	6 cut(s)	72, 171, 177, 350, 625, 773
HpyCH4IV	ACGT	4 cut(s)	338, 438, 872, 878
HpyCH4V	TGCA	2 cut(s)	950, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 515, 1063
HpyF3I	CTNAG	2 cut(s)	514, 644
HpySE526I	ACGT	4 cut(s)	338, 438, 872, 878
Hsp92I	GRCGYC	3 cut(s)	225, 378, 956
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
LguI	GCTCTTC	2 cut(s)	678, 1011
LmnI	GCTCC	4 cut(s)	215, 428, 578, 1030
LweI	GCATC	2 cut(s)	900, 937
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	4 cut(s)	338, 438, 872, 878
MaeIII	GTNAC	6 cut(s)	81, 171, 177, 339, 584, 773
MalI	GATC	6 cut(s)	42, 252, 278, 320, 490, 543
MboI	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	2 cut(s)	1009, 1069
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	2 cut(s)	969, 1008
MnlI	CCTC	4 cut(s)	32, 35, 372, 383
MseI	TTAA	4 cut(s)	566, 711, 824, 963
MslI	CAYNNNNRTG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	556, 707, 730
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	224, 515, 1063
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	3 cut(s)	556, 707, 730
NdeII	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	226, 471, 1032
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	81, 171, 177
NspV	TTCGAA	1 cut(s)	681
PciSI	GCTCTTC	2 cut(s)	678, 1011
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	5 cut(s)	184, 328, 525, 668, 696
Pfl23II	CGTACG	1 cut(s)	837
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	356, 430, 835, 1056
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	659
PluTI	GGCGCC	1 cut(s)	228
PmaCI	CACGTG	1 cut(s)	873
PmlI	CACGTG	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	659
Ppu21I	YACGTR	1 cut(s)	873
PspCI	CACGTG	1 cut(s)	873
PspLI	CGTACG	1 cut(s)	837
PspN4I	GGNNCC	3 cut(s)	226, 471, 1032
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	759, 839
RsaNI	GTAC	2 cut(s)	758, 838
RseI	CAYNNNNRTG	1 cut(s)	161
SalI	GTCGAC	1 cut(s)	653
SapI	GCTCTTC	2 cut(s)	678, 1011
SaqAI	TTAA	4 cut(s)	566, 711, 824, 963
SatI	GCNGC	4 cut(s)	355, 429, 834, 1055
Sau3AI	GATC	6 cut(s)	40, 250, 276, 318, 488, 541
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	3 cut(s)	556, 707, 730
SfaNI	GCATC	2 cut(s)	900, 937
SfcI	CTRYAG	1 cut(s)	750
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	681
SgrAI	CRCCGGYG	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	1009, 1069
SsiI	CCGC	7 cut(s)	354, 408, 426, 429, 833, 848, 1054
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	554, 705, 728
TaaI	ACNGT	6 cut(s)	72, 171, 177, 350, 625, 773
TaiI	ACGT	4 cut(s)	341, 441, 875, 881
TaqI	TCGA	6 cut(s)	249, 528, 540, 609, 654, 681
TasI	AATT	2 cut(s)	1009, 1069
TauI	GCSGC	4 cut(s)	357, 431, 836, 1057
TfiI	GAWTC	5 cut(s)	184, 328, 525, 668, 696
Tru1I	TTAA	4 cut(s)	566, 711, 824, 963
Tru9I	TTAA	4 cut(s)	566, 711, 824, 963
TscAI	CASTG	1 cut(s)	975
TseFI	GTSAC	3 cut(s)	81, 171, 177
Tsp45I	GTSAC	3 cut(s)	81, 171, 177
TspDTI	ATGAA	3 cut(s)	540, 589, 992
TspGWI	ACGGA	2 cut(s)	196, 235
TspRI	CASTG	1 cut(s)	975
Tth111I	GACNNNGTC	1 cut(s)	197
XbaI	TCTAGA	1 cut(s)	692
XmiI	GTMKAC	2 cut(s)	303, 654
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.