Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Forward (+)

11266357 .. 11267717

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGACTTCATCTCCGGCCCACAGAAGCTCATCGTCGTCATGGGCGCCACCGGCTCCGGCAAGTCCCGGCTCTCCCTCGACCTCGCCGTGCGGTTCCCTCCGGCCACCTTCGAGGTCATAAACGCCGACAAAATGCAGCTCTACAAGGGCCTCGACGTCACCACCAACAAGCTCTCCGACGCCGAACGACGCGTCGTTCCTCACCACCTCCTCGGCGAGTTCGACTCCCGCCACGGCGACGTCTCCCCCTCCGAGTTCCGCCGTCTCGCGGCGCAGGCGGTGTCTGACGTTCTCTCCCGGGGAAAAGTCCCGGTGCTCGTCGGAGGGTCCAACTCGTTCATCCACGTGCTACTCGTCGAACGGTTCGAACCGGACGTTGACGTCTTTGACGGCGAGGTAGCGGCGTCGTCGCAGCTCCGCTACGACTGCTGCTTCCTCTGGGTCGACGTGGAGTTCCCGGTTTTGACGGCGTACTTGTCGCGGCGAGTGGAGGAGATGCTCGATGCGGGGATGTTTCAGGAGCTGGCCGAGTTTCACGGCCAAAACCGGGCGGTTCAGACCGGTGTGAGCAAGGCGATCGGAGTGGCGGAGTTCAGCCGGTATTTTGAGGAGTATGCGGCGGCGGAGGTGGAGGAGGATGATCCGGTGCGGCGAGGAGCATACGAGGAGGCGGTGGGAGAGGTTAAAAGGAACACTTGGCAGCTGGCGAAGAGGCAGATGGGGAAGATTGCGAGGCTGAGGAAGGCGGGGTGGGACCTGAAGAGGCTGGACGCGACGGAGGTGCTCAGGGCGGTGGTGACGTCAGATGATGACGAGGATGGTGGCGGGAAGAGGTGGTCGGAGATTTGGGAGAGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAAGGATTTCTTGGAGGAGGAGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

305

Amino Acids

34.13

Weight (kDa)

4.91

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	10 - 121	7e-06	Isopentenyl transferase
IPPT	PF01715	46 - 122	5.2e-17	IPP transferase
IPPT	PF01715	138 - 240	1.5e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AatII	GACGTC	4 cut(s)	159, 243, 384, 803
AccB1I	GGYRCC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	4 cut(s)	192, 269, 481, 773
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	3 cut(s)	102, 525, 538
AcuI	CTGAAG	1 cut(s)	779
AcvI	CACGTG	1 cut(s)	346
AcyI	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	268, 547
AflIII	ACRYGT	1 cut(s)	190
AgeI	ACCGGT	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	6 cut(s)	28, 139, 172, 415, 523, 703
AluI	AGCT	6 cut(s)	28, 139, 172, 415, 523, 703
Alw21I	GWGCWC	2 cut(s)	318, 786
Alw26I	GTCTC	2 cut(s)	247, 269
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	5 cut(s)	16, 102, 148, 525, 538
ApeKI	GCWGC	4 cut(s)	136, 412, 429, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AsiGI	ACCGGT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	2 cut(s)	47, 274
AspS9I	GGNCC	4 cut(s)	17, 148, 327, 754
AsuC2I	CCSGG	6 cut(s)	67, 298, 299, 311, 458, 548
AsuHPI	GGTGA	3 cut(s)	151, 194, 808
AsuII	TTCGAA	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	327, 754
BanI	GGYRCC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	318, 786
BbvCI	CCTCAGC	1 cut(s)	737
BbvI	GCAGC	4 cut(s)	148, 416, 424, 712
BccI	CCATC	2 cut(s)	712, 812
BceAI	ACGGC	6 cut(s)	71, 246, 250, 406, 483, 553
BcgI	CGANNNNNNTGC	4 cut(s)	559, 593, 763, 797
BcnI	CCSGG	6 cut(s)	67, 298, 299, 311, 458, 548
BcoDI	GTCTC	2 cut(s)	247, 269
BfoI	RGCGCY	1 cut(s)	48
Bme1390I	CCNGG	6 cut(s)	67, 298, 299, 311, 458, 548
Bme18I	GGWCC	2 cut(s)	327, 754
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	4 cut(s)	17, 148, 327, 754
BmiI	GGNNCC	5 cut(s)	46, 55, 95, 328, 755
BmrFI	CCNGG	6 cut(s)	67, 298, 299, 311, 458, 548
BmsI	GCATC	2 cut(s)	486, 493
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	2 cut(s)	737, 785
Bpu14I	TTCGAA	1 cut(s)	366
BpuMI	CCSGG	6 cut(s)	67, 298, 299, 311, 458, 548
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
BsaJI	CCNNGG	4 cut(s)	211, 232, 297, 298
BsaWI	WCCGGW	3 cut(s)	370, 560, 643
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 158, 188, 278, 308, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 547
Bse118I	RCCGGY	3 cut(s)	50, 560, 597
BseDI	CCNNGG	4 cut(s)	211, 232, 297, 298
BseGI	GGATG	4 cut(s)	339, 516, 643, 823
BseLI	CCNNNNNNNGG	2 cut(s)	268, 547
BseMII	CTCAG	2 cut(s)	728, 799
BseRI	GAGGAG	7 cut(s)	200, 506, 623, 647, 669, 680, 914
BseXI	GCAGC	4 cut(s)	148, 416, 424, 712
Bsh1236I	CGCG	4 cut(s)	192, 269, 481, 773
Bsh1285I	CGRYCG	1 cut(s)	579
BshFI	GGCC	5 cut(s)	18, 104, 150, 527, 540
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	560
BsiEI	CGRYCG	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	318, 786
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	3 cut(s)	49, 293, 767
BslI	CCNNNNNNNGG	2 cut(s)	268, 547
BsmAI	GTCTC	2 cut(s)	247, 269
BsmBI	CGTCTC	2 cut(s)	247, 269
BsmFI	GGGAC	3 cut(s)	49, 293, 767
BsnI	GGCC	5 cut(s)	18, 104, 150, 527, 540
BsoBI	CYCGRG	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	318, 786
Bsp143I	GATC	2 cut(s)	576, 640
BspANI	GGCC	5 cut(s)	18, 104, 150, 527, 540
BspCNI	CTCAG	2 cut(s)	729, 798
BspFNI	CGCG	4 cut(s)	192, 269, 481, 773
BspLI	GGNNCC	5 cut(s)	46, 55, 95, 328, 755
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	44
BsrFI	RCCGGY	3 cut(s)	50, 560, 597
BssAI	RCCGGY	3 cut(s)	50, 560, 597
BssECI	CCNNGG	4 cut(s)	211, 232, 297, 298
BssMI	GATC	2 cut(s)	576, 640
BssNI	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	704, 755, 824
BstACI	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	276, 525, 705
BstDEI	CTNAG	2 cut(s)	737, 785
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	4 cut(s)	339, 516, 643, 823
BstFNI	CGCG	4 cut(s)	192, 269, 481, 773
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	47, 274
BstKTI	GATC	2 cut(s)	579, 643
BstMAI	GTCTC	2 cut(s)	247, 269
BstMBI	GATC	2 cut(s)	576, 640
BstMCI	CGRYCG	1 cut(s)	579
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 275, 426
BstSCI	CCNGG	6 cut(s)	65, 296, 297, 309, 456, 546
BstUI	CGCG	4 cut(s)	192, 269, 481, 773
BstV1I	GCAGC	4 cut(s)	148, 416, 424, 712
BsuRI	GGCC	5 cut(s)	18, 104, 150, 527, 540
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	4 cut(s)	339, 516, 643, 823
Cac8I	GCNNGC	3 cut(s)	276, 525, 705
CaiI	CAGNNNCTG	1 cut(s)	523
CfoI	GCGC	2 cut(s)	47, 274
Cfr10I	RCCGGY	3 cut(s)	50, 560, 597
Cfr13I	GGNCC	4 cut(s)	17, 148, 327, 754
Cfr9I	CCCGGG	1 cut(s)	297
CseI	GACGC	5 cut(s)	181, 188, 198, 393, 779
Csp6I	GTAC	1 cut(s)	472
CspAI	ACCGGT	1 cut(s)	560
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	737, 785
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	2 cut(s)	578, 642
DpnII	GATC	2 cut(s)	576, 640
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	3 cut(s)	102, 525, 538
Eam1104I	CTCTTC	3 cut(s)	704, 755, 824
EarI	CTCTTC	3 cut(s)	704, 755, 824
EciI	GGCGGA	3 cut(s)	248, 602, 638
Eco47I	GGWCC	2 cut(s)	327, 754
Eco57I	CTGAAG	1 cut(s)	779
Eco72I	CACGTG	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	297
EcoO109I	RGGNCCY	2 cut(s)	148, 754
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
Esp3I	CGTCTC	2 cut(s)	247, 269
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 119, 615, 661
FalI	AAGNNNNNCTT	4 cut(s)	679, 711, 878, 910
FaqI	GGGAC	3 cut(s)	49, 293, 767
FatI	CATG	1 cut(s)	39
FauI	CCCGC	4 cut(s)	236, 499, 739, 818
FblI	GTMKAC	1 cut(s)	444
FokI	GGATG	4 cut(s)	326, 523, 650, 830
GlaI	GCGC	2 cut(s)	46, 273
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	5 cut(s)	18, 104, 150, 527, 540
HgaI	GACGC	5 cut(s)	181, 188, 198, 393, 779
HhaI	GCGC	2 cut(s)	47, 274
Hin1I	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	45, 272
HinP1I	GCGC	2 cut(s)	45, 272
HincII	GTYRAC	2 cut(s)	379, 445
HindII	GTYRAC	2 cut(s)	379, 445
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	3 cut(s)	151, 194, 808
Hpy166II	GTNNAC	2 cut(s)	379, 445
Hpy188I	TCNGA	8 cut(s)	178, 253, 286, 323, 558, 581, 805, 841
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	379, 445
HpyAV	CCTTC	3 cut(s)	118, 736, 880
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	8 cut(s)	156, 240, 288, 345, 375, 381, 447, 800
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 275, 426
HpyF3I	CTNAG	2 cut(s)	737, 785
HpySE526I	ACGT	8 cut(s)	156, 240, 288, 345, 375, 381, 447, 800
Hsp92I	GRCGYC	7 cut(s)	45, 156, 180, 240, 381, 404, 800
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	45, 272
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	576, 640
LmnI	GCTCC	4 cut(s)	59, 420, 520, 656
Lsp1109I	GCAGC	4 cut(s)	148, 416, 424, 712
LweI	GCATC	2 cut(s)	486, 493
MaeII	ACGT	8 cut(s)	156, 240, 288, 345, 375, 381, 447, 800
MaeIII	GTNAC	2 cut(s)	157, 796
MalI	GATC	2 cut(s)	578, 642
MboI	GATC	2 cut(s)	576, 640
MboII	GAAGA	5 cut(s)	721, 736, 772, 841, 889
MhlI	GDGCHC	2 cut(s)	318, 786
MluI	ACGCGT	1 cut(s)	190
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	4 cut(s)	201, 301, 354, 819
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	703
MspR9I	CCNGG	6 cut(s)	67, 298, 299, 311, 458, 548
MvnI	CGCG	4 cut(s)	192, 269, 481, 773
MwoI	GCNNNNNNNGC	3 cut(s)	51, 275, 426
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	6 cut(s)	67, 298, 299, 311, 458, 548
NdeII	GATC	2 cut(s)	576, 640
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	5 cut(s)	46, 55, 95, 328, 755
NmeAIII	GCCGAG	2 cut(s)	192, 553
NmuCI	GTSAC	2 cut(s)	157, 796
NspV	TTCGAA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	5 cut(s)	84, 219, 351, 363, 372
PdmI	GAANNNNTTC	1 cut(s)	890
PinAI	ACCGGT	1 cut(s)	560
Ple19I	CGATCG	1 cut(s)	579
PleI	GAGTC	1 cut(s)	218
PluTI	GGCGCC	1 cut(s)	48
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
PspCI	CACGTG	1 cut(s)	346
PspN4I	GGNNCC	5 cut(s)	46, 55, 95, 328, 755
PspPI	GGNCC	4 cut(s)	17, 148, 327, 754
PspPPI	RGGWCCY	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	523
PvuI	CGATCG	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	703
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	576, 640
Sau96I	GGNCC	4 cut(s)	17, 148, 327, 754
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	6 cut(s)	67, 298, 299, 311, 458, 548
SduI	GDGCHC	2 cut(s)	318, 786
SfaNI	GCATC	2 cut(s)	486, 493
SfoI	GGCGCC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	2 cut(s)	327, 754
SmaI	CCCGGG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	344
SspDI	GGCGCC	1 cut(s)	44
StyD4I	CCNGG	6 cut(s)	65, 296, 297, 309, 456, 546
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	8 cut(s)	159, 243, 291, 348, 378, 384, 450, 803
TaqI	TCGA	8 cut(s)	78, 111, 153, 222, 357, 366, 444, 501
TauI	GCSGC	6 cut(s)	272, 404, 484, 620, 623, 652
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TseFI	GTSAC	2 cut(s)	157, 796
TseI	GCWGC	4 cut(s)	136, 412, 429, 700
Tsp45I	GTSAC	2 cut(s)	157, 796
TspDTI	ATGAA	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	791
TspMI	CCCGGG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	327, 754
XmaI	CCCGGG	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	890
ZraI	GACGTC	4 cut(s)	157, 241, 382, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.