Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Forward (+)

10162118 .. 10166871

Gene Structure 4754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATGAAGAGAAGGTCGACTCCGTACGGCAGAGACATGCCGTCTTCTACGACCAAGGACGAGGAAGTTGAGTGGGAAATGAGACCGGGAGGAATGTTGGTCCAGAAAAGAGTCGACAAGTCATCTGACGTTGCCCCGGTTCCGAACTTACGGCTTCGGATTGCTTTCGGTGGTCTCCGGTACGAGATCTCCGCCAGCTCTCAATCTACCTTTGGGGAGTTGAAGAAGGTTCTTACGGCGGAGACGGGGTTACAGCCCGGAGACCAGAGGCTAATATTCAGGGGAAAAGAGCGAGAAAACGGGGAGTACTTGGACATGTGCGGAGTCAAAGACCGATCAAAAGTCATGCTAATCGAGGACCCAGCGAGCATCGAGAGACGAGCCAATGAGATGCGGAGGAAAGCTAAGATCCAGACCGCTCATCGCGCCATCTCGGTCGTGTGCTTGGAGGTCGATAAGCTCGCGGAGCAGGTCTCTGCTATTGAAAAATCTATCTCAAATGGAGTCAGGGTACCAGAAGTTCAGATCACCACACTAATTGAGATGCTTATGAGACAAGCAATCAAGCTGGACAACATTTCTGCTGAAGGAGATGCTTCTGCTCAAAAGAGTTTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAACTCTTGATGCGATGAAGATATCAAATGCAAAGGTAAAGCCTGTGGTTGTGACAACAAAGTGGGAAACCTTTGATCCTCCTCCGACTACAGCCAAATGGGAATTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

252

Amino Acids

28.33

Weight (kDa)

9.17

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	57 - 118	4.8e-09	Ubiquitin family
BAG	PF02179	147 - 219	1.3e-11	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	17, 114
AccII	CGCG	2 cut(s)	426, 464
AciI	CCGC	6 cut(s)	192, 239, 321, 394, 417, 464
AclWI	GGATC	2 cut(s)	403, 713
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	4 cut(s)	26, 182, 308, 513
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	223, 485, 644
AhdI	GACNNNNNGTC	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	1 cut(s)	731
AluBI	AGCT	4 cut(s)	198, 404, 460, 568
AluI	AGCT	4 cut(s)	198, 404, 460, 568
Alw26I	GTCTC	8 cut(s)	27, 76, 179, 236, 255, 370, 478, 547
AlwI	GGATC	2 cut(s)	403, 713
ApoI	RAATTY	1 cut(s)	746
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	100, 358
AsuC2I	CCSGG	3 cut(s)	87, 137, 258
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	100, 358
BanI	GGYRCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	4 cut(s)	25, 43, 167, 252
BcnI	CCSGG	3 cut(s)	87, 137, 258
BcoDI	GTCTC	8 cut(s)	27, 76, 179, 236, 255, 370, 478, 547
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	186
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	87, 137, 258
Bme18I	GGWCC	2 cut(s)	100, 358
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	100, 358
BmiI	GGNNCC	3 cut(s)	141, 360, 513
BmrFI	CCNGG	3 cut(s)	87, 137, 258
BmsI	GCATC	5 cut(s)	378, 381, 534, 583, 643
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuMI	CCSGG	3 cut(s)	87, 137, 258
BsaI	GGTCTC	4 cut(s)	76, 179, 255, 478
BsaJI	CCNNGG	2 cut(s)	54, 135
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 233, 263, 495, 525
BseDI	CCNNGG	2 cut(s)	54, 135
BseRI	GAGGAG	1 cut(s)	714
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	426, 464
Bsh1285I	CGRYCG	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	438
BsiSI	CCGG	4 cut(s)	86, 137, 178, 258
BsiWI	CGTACG	1 cut(s)	24
BsmAI	GTCTC	8 cut(s)	27, 76, 179, 236, 255, 370, 478, 547
BsmBI	CGTCTC	2 cut(s)	236, 370
Bso31I	GGTCTC	4 cut(s)	76, 179, 255, 478
Bsp143I	GATC	5 cut(s)	186, 335, 408, 525, 718
BspACI	CCGC	6 cut(s)	192, 239, 321, 394, 417, 464
BspFNI	CGCG	2 cut(s)	426, 464
BspLI	GGNNCC	3 cut(s)	141, 360, 513
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	2 cut(s)	403, 713
BspT107I	GGYRCC	1 cut(s)	511
BspTNI	GGTCTC	4 cut(s)	76, 179, 255, 478
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	54, 135
BssMI	GATC	5 cut(s)	186, 335, 408, 525, 718
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	3 cut(s)	196, 367, 462
BstDEI	CTNAG	1 cut(s)	405
BstFNI	CGCG	2 cut(s)	426, 464
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	5 cut(s)	189, 338, 411, 528, 721
BstMAI	GTCTC	8 cut(s)	27, 76, 179, 236, 255, 370, 478, 547
BstMBI	GATC	5 cut(s)	186, 335, 408, 525, 718
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 466
BstNSI	RCATGY	2 cut(s)	40, 319
BstSCI	CCNGG	3 cut(s)	85, 135, 256
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	2 cut(s)	426, 464
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	186, 408
BstYI	RGATCY	2 cut(s)	186, 408
BtgZI	GCGATG	2 cut(s)	407, 671
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	196, 367, 462
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	100, 358
Csp6I	GTAC	4 cut(s)	25, 181, 307, 512
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	37, 316, 346
CviQI	GTAC	4 cut(s)	25, 181, 307, 512
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	5 cut(s)	188, 337, 410, 527, 720
DpnII	GATC	5 cut(s)	186, 335, 408, 525, 718
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	2
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	2 cut(s)	181, 254
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	4 cut(s)	76, 179, 255, 478
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	2 cut(s)	100, 358
Eco57I	CTGAAG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	236, 370
FaeI	CATG	3 cut(s)	40, 319, 349
FaiI	YATR	4 cut(s)	38, 317, 347, 551
FatI	CATG	3 cut(s)	36, 315, 345
FblI	GTMKAC	2 cut(s)	17, 114
GlaI	GCGC	1 cut(s)	427
GsaI	CCCAGC	1 cut(s)	365
HapII	CCGG	4 cut(s)	86, 137, 178, 258
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	40, 319, 349
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	2 cut(s)	18, 115
HindII	GTYRAC	2 cut(s)	18, 115
HinfI	GANTC	4 cut(s)	19, 111, 324, 504
HpaII	CCGG	4 cut(s)	86, 137, 178, 258
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	18, 115
Hpy188I	TCNGA	5 cut(s)	127, 144, 159, 525, 729
Hpy188III	TCNNGA	4 cut(s)	103, 373, 412, 650
Hpy8I	GTNNAC	2 cut(s)	18, 115
HpyAV	CCTTC	3 cut(s)	6, 220, 581
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	616, 631, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 466
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	40, 319, 349
HspAI	GCGC	1 cut(s)	426
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	186, 335, 408, 525, 718
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	5 cut(s)	378, 381, 534, 583, 643
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	249, 694
MalI	GATC	5 cut(s)	188, 337, 410, 527, 720
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	5 cut(s)	186, 335, 408, 525, 718
MboII	GAAGA	4 cut(s)	19, 36, 235, 673
MflI	RGATCY	2 cut(s)	186, 408
MluCI	AATT	2 cut(s)	537, 746
MlyI	GAGTC	4 cut(s)	13, 120, 333, 513
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	9 cut(s)	55, 83, 261, 349, 390, 442, 618, 732, 735
MseI	TTAA	1 cut(s)	757
MspI	CCGG	4 cut(s)	86, 137, 178, 258
MspR9I	CCNGG	3 cut(s)	87, 137, 258
MvnI	CGCG	2 cut(s)	426, 464
MwoI	GCNNNNNNNGC	2 cut(s)	425, 466
NciI	CCSGG	3 cut(s)	87, 137, 258
NdeII	GATC	5 cut(s)	186, 335, 408, 525, 718
NlaIII	CATG	3 cut(s)	40, 319, 349
NlaIV	GGNNCC	3 cut(s)	141, 360, 513
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	2 cut(s)	40, 319
PciI	ACATGT	1 cut(s)	315
Pfl23II	CGTACG	1 cut(s)	24
PleI	GAGTC	4 cut(s)	13, 119, 332, 512
PpsI	GAGTC	4 cut(s)	13, 119, 332, 512
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	361
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	141, 360, 513
PspPI	GGNCC	2 cut(s)	100, 358
PspPPI	RGGWCCY	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PsuI	RGATCY	2 cut(s)	186, 408
RsaI	GTAC	4 cut(s)	26, 182, 308, 513
RsaNI	GTAC	4 cut(s)	25, 181, 307, 512
SalI	GTCGAC	2 cut(s)	16, 113
SaqAI	TTAA	1 cut(s)	757
Sau3AI	GATC	5 cut(s)	186, 335, 408, 525, 718
Sau96I	GGNCC	2 cut(s)	100, 358
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	4 cut(s)	13, 120, 333, 513
ScrFI	CCNGG	3 cut(s)	87, 137, 258
SfaNI	GCATC	5 cut(s)	378, 381, 534, 583, 643
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	2 cut(s)	100, 358
Sse9I	AATT	2 cut(s)	537, 746
SsiI	CCGC	6 cut(s)	192, 239, 321, 394, 417, 464
SspI	AATATT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	85, 135, 256
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	17, 114, 354, 372, 453
TaqII	GACCGA	2 cut(s)	348, 424
TasI	AATT	2 cut(s)	537, 746
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	757
Tru9I	TTAA	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	694
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	2 cut(s)	20, 674
TspGWI	ACGGA	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	100, 358
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	2 cut(s)	40, 319
XmiI	GTMKAC	2 cut(s)	17, 114
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.