Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Forward (+)

8784 .. 9226

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001211.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgcctgaagatgacacagccaagatggcgacatcacccccgtcgagtttcgacgagttgcagctcaggcggtacgagtattgctttctctgggccaacatgtcgttgttagtgttgacggtgtacttatcgcagcgagtggaggaaatgttcgacttggggatgtttcttgaggtggccgagttctacgaggaaaactctgcgggtcaaaccaaactaagaaaggcaatcggagtggcggagttcggtcagtattttaaagagtacccgcctccggtggcggaagaggacgatgatcctgtgccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

102

Amino Acids

11.77

Weight (kDa)

4.15

Isoelectric Point (pI)

72.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	70, 203, 239, 269, 281
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	74, 125, 266
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	93, 177
ApeKI	GCWGC	2 cut(s)	61, 133
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	73, 145
BccI	CCATC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	62, 134
BlsI	GCNGC	2 cut(s)	63, 135
BmgT120I	GGNCC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	73, 145
BshFI	GGCC	2 cut(s)	95, 179
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	274
BsnI	GGCC	2 cut(s)	95, 179
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	5 cut(s)	70, 203, 239, 269, 281
BspANI	GGCC	2 cut(s)	95, 179
BspCNI	CTCAG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	290
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	65, 218
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 67
BstNSI	RCATGY	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	73, 145
BsuRI	GGCC	2 cut(s)	95, 179
BtsCI	GGATG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	73, 124, 265
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	4 cut(s)	20, 64, 95, 179
CviKI_1	RGCY	4 cut(s)	20, 64, 95, 179
CviQI	GTAC	3 cut(s)	73, 124, 265
DdeI	CTNAG	2 cut(s)	65, 218
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	2 cut(s)	254, 296
Eco57I	CTGAAG	1 cut(s)	27
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FatI	CATG	1 cut(s)	99
FauI	CCCGC	2 cut(s)	196, 276
Fnu4HI	GCNGC	2 cut(s)	62, 134
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	62, 134
GluI	GCNGC	2 cut(s)	62, 134
HaeIII	GGCC	2 cut(s)	95, 179
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	117, 124
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	117, 124
Hpy99I	CGWCG	2 cut(s)	46, 56
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 67
HpyF3I	CTNAG	2 cut(s)	65, 218
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	18, 52, 76, 288
Lsp1109I	GCAGC	2 cut(s)	73, 145
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	20, 296
MhlI	GDGCHC	1 cut(s)	306
MnlI	CCTC	5 cut(s)	136, 166, 184, 280, 282
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	26, 67
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	205
NspI	RCATGY	1 cut(s)	103
PciI	ACATGT	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	63, 135
PscI	ACATGT	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	93
RsaI	GTAC	3 cut(s)	74, 125, 266
RsaNI	GTAC	3 cut(s)	73, 124, 265
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	62, 134
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	2 cut(s)	66, 177
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	5 cut(s)	70, 203, 239, 269, 281
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	44, 51, 153
TaqII	GACCGA	1 cut(s)	236
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	61, 133
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.