FvH4_3g05590

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3272417 .. 3273852
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05590.t1

Sequence Viewer

Length: 882 bp
ATGGAGAAGCTCATCGTCGTCATGGGCGCCACCGGCACCGGCAAGTCACGCCTCTCCATCAACCTCGCCGCGCGGTTCCCTCCGGACACCTTCGAGGTCATCAACGCCGACAAGATGCAGCTCTACAAGGGCCTCGACGTCACCACCAACAAGGTCACCGACGCCGAACGACGCCTCGTCCCGCACCACCTTCTCGGCGACCTCGACTCCCGCCACGGCGACGTCTCCTCCGCCGAGTTCCGCCGTCTCGCGGCGCATGTGGTGTCTGATGTTCTCTCCCGGGGAAAAGTCCCGGTGCTCGTCGGCGGGTCCAACTCGTTCATCCACGCACTCCTCGTCGACCGGTTCGAACCGGACGTCGACGTCTTTGACGGCGAGGTGGCGGCGTCGTCGGAGCTCCGGTACGACTGCTGCTTTCTCTGGCTCGACGTGGCGTTTCAGACTTTGGCGCCGTACTTGTCGCGGCGAGTGGAGGAGATGCTCGACTCGGGCATGTTTCGCGAGCTGGCCGAGTTTCACGGCCAAAACCGGGCGGTTCAGACCGGTCTGAGTAAGTCGATCGGAGTGGCAGAGTTCAGCCGTTATTTTAAGGAGTATGCGGCGGAGGAGGAGGAGGTGCGGCGAGGAGCATACAAGGAGGCGGTGAGGAACACACAAAAGAACACGTGGCAGATGGCGAAGAGGCAGATGGGAAAGATTGGGAGGCTGAGGAAAGCAGGGTGGGATCTGAAGAGGCTGGACGCGACGGAGGCGTTTAAGGCGATGGGGACGACGTCAGATGATGACGAGGATAGCGGCGGGAAGAGGTGGTCGGAGATTTGGGAGGAAGAGGTGGTTGGGCCAAGCGTGAAGATTGTGAAGCGTTTCTTGGAGGAGGAGTAG

Protein Analysis

294

Amino Acids

33.01

Weight (kDa)

5.68

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 4 - 116 4.7e-08 Isopentenyl transferase
IPPT PF01715 40 - 116 2.5e-18 IPP transferase
IPPT PF01715 132 - 230 1.2e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 5 cut(s) 141, 225, 360, 366, 776
AccB1I GGYRCC 3 cut(s) 26, 35, 448
AccI GTMKAC 2 cut(s) 339, 360
AccII CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
AccIII TCCGGA 1 cut(s) 82
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 2 cut(s) 507, 520
AcuI CTGAAG 1 cut(s) 749
AcvI CACGTG 1 cut(s) 666
AfaI GTAC 2 cut(s) 404, 455
AfiI CCNNNNNNNGG 2 cut(s) 250, 529
AflIII ACRYGT 1 cut(s) 663
AgeI ACCGGT 2 cut(s) 342, 542
AhdI GACNNNNNGTC 1 cut(s) 176
AjiI CACGTC 1 cut(s) 430
AjuI GAANNNNNNNTTGG 3 cut(s) 819, 851, 851
AluBI AGCT 4 cut(s) 10, 121, 397, 505
AluI AGCT 4 cut(s) 10, 121, 397, 505
Alw21I GWGCWC 2 cut(s) 300, 399
Alw26I GTCTC 2 cut(s) 229, 251
AlwI GGATC 1 cut(s) 732
Ama87I CYCGRG 2 cut(s) 279, 487
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 4 cut(s) 130, 507, 520, 839
ApeKI GCWGC 2 cut(s) 118, 411
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AsiGI ACCGGT 2 cut(s) 342, 542
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 4 cut(s) 29, 73, 256, 451
AspS9I GGNCC 3 cut(s) 130, 309, 839
AsuC2I CCSGG 4 cut(s) 280, 281, 293, 530
AsuHPI GGTGA 3 cut(s) 133, 148, 655
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 2 cut(s) 279, 487
AvaII GGWCC 1 cut(s) 309
BanI GGYRCC 3 cut(s) 26, 35, 448
BanII GRGCYC 1 cut(s) 399
BbrPI CACGTG 1 cut(s) 666
Bbv12I GWGCWC 2 cut(s) 300, 399
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 2 cut(s) 130, 398
BccI CCATC 4 cut(s) 65, 667, 682, 757
BceAI ACGGC 6 cut(s) 228, 232, 388, 436, 535, 564
BcnI CCSGG 4 cut(s) 280, 281, 293, 530
BcoDI GTCTC 2 cut(s) 229, 251
BfoI RGCGCY 2 cut(s) 30, 452
BisI GCNGC 9 cut(s) 69, 119, 252, 384, 412, 464, 600, 620, 796
BlsI GCNGC 9 cut(s) 70, 120, 253, 385, 413, 465, 601, 621, 797
Bme1390I CCNGG 4 cut(s) 280, 281, 293, 530
Bme18I GGWCC 1 cut(s) 309
BmeRI GACNNNNNGTC 1 cut(s) 176
BmeT110I CYCGRG 2 cut(s) 279, 487
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 130, 309, 839
BmiI GGNNCC 5 cut(s) 28, 37, 77, 310, 450
BmrFI CCNGG 4 cut(s) 280, 281, 293, 530
BmsI GCATC 2 cut(s) 105, 468
Bpu10I CCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 348
BpuMI CCSGG 4 cut(s) 280, 281, 293, 530
BsaAI YACGTR 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 214, 279, 280
BsaWI WCCGGW 5 cut(s) 82, 342, 352, 399, 542
BsaXI ACNNNNNCTCC 7 cut(s) 191, 212, 221, 242, 386, 416, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 529
Bse118I RCCGGY 4 cut(s) 32, 38, 342, 542
BseAI TCCGGA 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 214, 279, 280
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 250, 529
BseMII CTCAG 2 cut(s) 539, 698
BseRI GAGGAG 7 cut(s) 217, 323, 488, 620, 623, 626, 639
BseXI GCAGC 2 cut(s) 130, 398
Bsh1236I CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
Bsh1285I CGRYCG 2 cut(s) 343, 561
BshFI GGCC 4 cut(s) 132, 509, 522, 841
BshNI GGYRCC 3 cut(s) 26, 35, 448
BshTI ACCGGT 2 cut(s) 342, 542
BsiEI CGRYCG 2 cut(s) 343, 561
BsiHKAI GWGCWC 2 cut(s) 300, 399
BsiHKCI CYCGRG 2 cut(s) 279, 487
BslFI GGGAC 3 cut(s) 164, 275, 781
BslI CCNNNNNNNGG 2 cut(s) 250, 529
BsmAI GTCTC 2 cut(s) 229, 251
BsmBI CGTCTC 2 cut(s) 229, 251
BsmFI GGGAC 3 cut(s) 164, 275, 781
BsnI GGCC 4 cut(s) 132, 509, 522, 841
BsoBI CYCGRG 2 cut(s) 279, 487
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 300, 399
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 558, 724
Bsp68I TCGCGA 1 cut(s) 501
BspANI GGCC 4 cut(s) 132, 509, 522, 841
BspCNI CTCAG 2 cut(s) 540, 699
BspEI TCCGGA 1 cut(s) 82
BspFNI CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
BspLI GGNNCC 5 cut(s) 28, 37, 77, 310, 450
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 3 cut(s) 26, 35, 448
BsrFI RCCGGY 4 cut(s) 32, 38, 342, 542
BssAI RCCGGY 4 cut(s) 32, 38, 342, 542
BssECI CCNNGG 3 cut(s) 214, 279, 280
BssMI GATC 2 cut(s) 558, 724
Bst6I CTCTTC 4 cut(s) 674, 725, 797, 822
BstBAI YACGTR 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 503, 507
BstDEI CTNAG 2 cut(s) 548, 707
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
BstH2I RGCGCY 2 cut(s) 30, 452
BstHHI GCGC 4 cut(s) 29, 73, 256, 451
BstKTI GATC 2 cut(s) 561, 727
BstMAI GTCTC 2 cut(s) 229, 251
BstMBI GATC 2 cut(s) 558, 724
BstMCI CGRYCG 2 cut(s) 343, 561
BstMWI GCNNNNNNNGC 5 cut(s) 33, 48, 498, 749, 758
BstNSI RCATGY 2 cut(s) 260, 496
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 4 cut(s) 278, 279, 291, 528
BstUI CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
BstV1I GCAGC 2 cut(s) 130, 398
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuRI GGCC 4 cut(s) 132, 509, 522, 841
BtgI CCRYGG 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 776
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 1 cut(s) 321
BtuMI TCGCGA 1 cut(s) 501
Cac8I GCNNGC 2 cut(s) 503, 507
CfoI GCGC 4 cut(s) 29, 73, 256, 451
Cfr10I RCCGGY 4 cut(s) 32, 38, 342, 542
Cfr13I GGNCC 3 cut(s) 130, 309, 839
Cfr9I CCCGGG 1 cut(s) 279
CseI GACGC 4 cut(s) 170, 180, 375, 749
Csp6I GTAC 2 cut(s) 403, 454
CspAI ACCGGT 2 cut(s) 342, 542
CviAII CATG 3 cut(s) 22, 257, 493
CviQI GTAC 2 cut(s) 403, 454
DdeI CTNAG 2 cut(s) 548, 707
DinI GGCGCC 2 cut(s) 28, 450
DpnI GATC 2 cut(s) 560, 726
DpnII GATC 2 cut(s) 558, 724
DrdI GACNNNNNNGTC 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 2 cut(s) 507, 520
Eam1104I CTCTTC 4 cut(s) 674, 725, 797, 822
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 4 cut(s) 674, 725, 797, 822
EciI GGCGGA 3 cut(s) 220, 230, 617
Ecl136II GAGCTC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 749
Eco72I CACGTG 1 cut(s) 666
Eco88I CYCGRG 2 cut(s) 279, 487
Eco91I GGTNACC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 399
EgeI GGCGCC 2 cut(s) 28, 450
EheI GGCGCC 2 cut(s) 28, 450
Esp3I CGTCTC 2 cut(s) 229, 251
FaeI CATG 3 cut(s) 25, 260, 496
FaiI YATR 5 cut(s) 23, 258, 494, 597, 631
FalI AAGNNNNNCTT 1 cut(s) 851
FaqI GGGAC 3 cut(s) 164, 275, 781
FatI CATG 3 cut(s) 21, 256, 492
FauI CCCGC 4 cut(s) 189, 218, 299, 791
FblI GTMKAC 2 cut(s) 339, 360
Fnu4HI GCNGC 9 cut(s) 69, 119, 252, 384, 412, 464, 600, 620, 796
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 9 cut(s) 69, 119, 252, 384, 412, 464, 600, 620, 796
GlaI GCGC 4 cut(s) 28, 72, 255, 450
GluI GCNGC 9 cut(s) 69, 119, 252, 384, 412, 464, 600, 620, 796
HaeII RGCGCY 2 cut(s) 30, 452
HaeIII GGCC 4 cut(s) 132, 509, 522, 841
HgaI GACGC 4 cut(s) 170, 180, 375, 749
HhaI GCGC 4 cut(s) 29, 73, 256, 451
Hin1II CATG 3 cut(s) 25, 260, 496
Hin6I GCGC 4 cut(s) 27, 71, 254, 449
HinP1I GCGC 4 cut(s) 27, 71, 254, 449
HincII GTYRAC 2 cut(s) 340, 361
HindII GTYRAC 2 cut(s) 340, 361
HinfI GANTC 2 cut(s) 206, 485
HphI GGTGA 3 cut(s) 133, 148, 655
Hpy166II GTNNAC 2 cut(s) 340, 361
Hpy188I TCNGA 9 cut(s) 268, 394, 441, 540, 549, 563, 729, 778, 814
Hpy188III TCNNGA 2 cut(s) 83, 500
Hpy8I GTNNAC 2 cut(s) 340, 361
HpyAV CCTTC 2 cut(s) 100, 200
HpyCH4IV ACGT 7 cut(s) 138, 222, 357, 363, 429, 665, 773
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 48, 498, 749, 758
HpyF3I CTNAG 2 cut(s) 548, 707
HpySE526I ACGT 7 cut(s) 138, 222, 357, 363, 429, 665, 773
Hsp92II CATG 3 cut(s) 25, 260, 496
HspAI GCGC 4 cut(s) 27, 71, 254, 449
KasI GGCGCC 2 cut(s) 26, 448
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 558, 724
LmnI GCTCC 3 cut(s) 394, 402, 626
Lsp1109I GCAGC 2 cut(s) 130, 398
LweI GCATC 2 cut(s) 105, 468
MaeII ACGT 7 cut(s) 138, 222, 357, 363, 429, 665, 773
MaeIII GTNAC 3 cut(s) 45, 139, 154
MalI GATC 2 cut(s) 560, 726
MboI GATC 2 cut(s) 558, 724
MboII GAAGA 5 cut(s) 691, 742, 814, 839, 862
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 300, 399
Mly113I GGCGCC 2 cut(s) 27, 449
MlyI GAGTC 2 cut(s) 200, 479
MmeI TCCRAC 3 cut(s) 336, 372, 792
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 2 cut(s) 588, 756
MspR9I CCNGG 4 cut(s) 280, 281, 293, 530
MvnI CGCG 6 cut(s) 71, 73, 251, 463, 501, 743
MwoI GCNNNNNNNGC 5 cut(s) 33, 48, 498, 749, 758
NarI GGCGCC 2 cut(s) 27, 449
NciI CCSGG 4 cut(s) 280, 281, 293, 530
NdeII GATC 2 cut(s) 558, 724
NlaIII CATG 3 cut(s) 25, 260, 496
NlaIV GGNNCC 5 cut(s) 28, 37, 77, 310, 450
NmeAIII GCCGAG 3 cut(s) 174, 259, 535
NmuCI GTSAC 3 cut(s) 45, 139, 154
NruI TCGCGA 1 cut(s) 501
NspI RCATGY 2 cut(s) 260, 496
NspV TTCGAA 1 cut(s) 348
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 333, 345, 354
PdmI GAANNNNTTC 1 cut(s) 863
PflFI GACNNNGTC 1 cut(s) 772
PinAI ACCGGT 2 cut(s) 342, 542
PkrI GCNGC 9 cut(s) 70, 120, 253, 385, 413, 465, 601, 621, 797
Ple19I CGATCG 1 cut(s) 561
PleI GAGTC 2 cut(s) 200, 479
PluTI GGCGCC 2 cut(s) 30, 452
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 2 cut(s) 200, 479
Ppu21I YACGTR 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 399
PspCI CACGTG 1 cut(s) 666
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 5 cut(s) 28, 37, 77, 310, 450
PspPI GGNCC 3 cut(s) 130, 309, 839
PsuI RGATCY 1 cut(s) 724
PsyI GACNNNGTC 1 cut(s) 772
PvuI CGATCG 1 cut(s) 561
RruI TCGCGA 1 cut(s) 501
RsaI GTAC 2 cut(s) 404, 455
RsaNI GTAC 2 cut(s) 403, 454
SacI GAGCTC 1 cut(s) 399
SalI GTCGAC 2 cut(s) 338, 359
SaqAI TTAA 2 cut(s) 588, 756
SatI GCNGC 9 cut(s) 69, 119, 252, 384, 412, 464, 600, 620, 796
Sau3AI GATC 2 cut(s) 558, 724
Sau96I GGNCC 3 cut(s) 130, 309, 839
SchI GAGTC 2 cut(s) 200, 479
ScrFI CCNGG 4 cut(s) 280, 281, 293, 530
SduI GDGCHC 2 cut(s) 300, 399
SfaNI GCATC 2 cut(s) 105, 468
SfoI GGCGCC 2 cut(s) 28, 450
SfuI TTCGAA 1 cut(s) 348
SgrDI CGTCGACG 1 cut(s) 359
SinI GGWCC 1 cut(s) 309
SmaI CCCGGG 1 cut(s) 281
SspDI GGCGCC 2 cut(s) 26, 448
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 4 cut(s) 278, 279, 291, 528
TaiI ACGT 7 cut(s) 141, 225, 360, 366, 432, 668, 776
TaqI TCGA 9 cut(s) 93, 135, 204, 339, 348, 360, 426, 483, 557
TauI GCSGC 7 cut(s) 71, 254, 386, 466, 602, 622, 798
Tru1I TTAA 2 cut(s) 588, 756
Tru9I TTAA 2 cut(s) 588, 756
TseFI GTSAC 3 cut(s) 45, 139, 154
TseI GCWGC 2 cut(s) 118, 411
Tsp45I GTSAC 3 cut(s) 45, 139, 154
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 761
TspMI CCCGGG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 772
VpaK11BI GGWCC 1 cut(s) 309
XceI RCATGY 2 cut(s) 260, 496
XmaI CCCGGG 1 cut(s) 279
XmiI GTMKAC 2 cut(s) 339, 360
XmnI GAANNNNTTC 1 cut(s) 863
ZraI GACGTC 5 cut(s) 139, 223, 358, 364, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.