MD13G1040600.v1.1

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
2775658 .. 2776770
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1040600.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGACACTTCATCCCCTCCCAACTCACTCCCTCCATTATTCTAATCTCAATTTCAATACGAATTATATCTCCCACCGCTTCCACTTGTTCCCGCCGCTCCACCACCTCTACAACCACCCCACTCCTCCGCTTCACCTCCCCCAAAGGCCCCGCCGCTCGGCCCACATGGCCACCGGCCCCACCTCAGCGGGCCCACGAAGAAAAGACAAGCTTCTTGTCATCATGGGGGCCACCGGCGCTGGCAAGTCCCGCCTCTCCCTCGACCTCGCCAGCCGCTTCCCCTTCTTCGAAATCGTCAACTCCGACAAAATACAACTCTACCGCGGCCTAGACATCACCACCAACAAGCTCCCCCTACCGGAACGACTCGGCGTCCCCCACCACCTCCTCGGCGAGTTCGACCCCCTAGACGGCGACTTCACCCCCGCCGATTTTCGCGCCGTCGCCGGTCAGGTTGTTTCCGGCATTACCAATCGGAGGAAGGTGCCGATGCTCGTCGGCGGGTCAAACTCCTTCATTCACGCGATGGTCGCGGAACGGTTCGAACCGGGATCCAATGTCTTCGAACCGGGTTTCGACGCCTCCGTCTCGGCCGAGCTCAGGTACAATTGCTGTTTTCTTTGGGTGGACGTGTCGATGGCGGTGTTGACGGAATATTTATCAAAGCGAGTCGACGAAATGCTCGACTCGGGAATGTTCGACGAGTTGGCCGAGTTTTGCGACCCGGATGGCCAGGACAAGCACGACCCAGCTGCGGTTCCGACAGGGTTGAGAAAGGCGATTGGAGTGCCCGAGTTCACTCGGTATTTTAAAAAATACCCACAAAGTAAAAGAGACGAAGACGACGACCGGGAGCGGAGAGGAGCATACGAAGAGGCGGTGAGGGTGATCAAGGACAACACGTGTCAGCTGGCGAAGAGGCAGATAGGGAAGATCCTACGGTTAAGAGGGGGAGGGTGGGACTTACGGAGACTAGACGCAACGGACGCGTTTAGGGCGGTGGTTGCGATGTCGACGCCGGAAAATGACGGCGGAGAGAGGTGGTCAGAGATATGGGAGCGGCAGGTGGTGGAACCAAGCGCGAAGATTGTGAAGCGCTTCTTGGAGGAGTAG

Protein Analysis

371

Amino Acids

41.85

Weight (kDa)

7.26

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 105 - 180 1.3e-15 IPP transferase
IPPT PF01715 199 - 309 1.1e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1054
AasI GACNNNNNNGTC 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 1054
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 4 cut(s) 97, 156, 856, 1060
AccI GTMKAC 2 cut(s) 672, 1013
AccII CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
AclWI GGATC 3 cut(s) 546, 559, 928
AcoI YGGCCR 4 cut(s) 168, 591, 708, 730
AcvI CACGTG 1 cut(s) 903
AcyI GRCGYC 3 cut(s) 372, 579, 1016
AfaI GTAC 1 cut(s) 605
AfeI AGCGCT 1 cut(s) 1097
AfiI CCNNNNNNNGG 6 cut(s) 157, 358, 410, 477, 600, 754
AflIII ACRYGT 4 cut(s) 630, 900, 902, 987
AgsI TTSAA 1 cut(s) 55
AhdI GACNNNNNGTC 1 cut(s) 371
AjiI CACGTC 1 cut(s) 631
AjnI CCWGG 1 cut(s) 732
AjuI GAANNNNNNNTTGG 1 cut(s) 1085
AluBI AGCT 5 cut(s) 211, 349, 598, 752, 910
AluI AGCT 5 cut(s) 211, 349, 598, 752, 910
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 3 cut(s) 592, 828, 964
AlwI GGATC 3 cut(s) 546, 559, 928
Ama87I CYCGRG 2 cut(s) 688, 791
Aor51HI AGCGCT 1 cut(s) 1097
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 1097
AspLEI GCGC 4 cut(s) 239, 440, 1082, 1098
AspS9I GGNCC 6 cut(s) 147, 160, 176, 190, 191, 228
AsuC2I CCSGG 4 cut(s) 549, 570, 725, 851
AsuHPI GGTGA 5 cut(s) 125, 328, 412, 892, 898
AsuII TTCGAA 3 cut(s) 288, 543, 564
AvaI CYCGRG 2 cut(s) 688, 791
BaeGI GKGCMC 2 cut(s) 194, 792
BalI TGGCCA 2 cut(s) 170, 732
BamHI GGATCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 194, 600
BbrPI CACGTG 1 cut(s) 903
BbsI GAAGAC 2 cut(s) 553, 846
Bbv12I GWGCWC 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 739
BccI CCATC 3 cut(s) 520, 631, 722
BceAI ACGGC 3 cut(s) 425, 427, 1045
BcgI CGANNNNNNTGC 4 cut(s) 734, 768, 769, 803
BciT130I CCWGG 1 cut(s) 734
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 4 cut(s) 549, 570, 725, 851
BcoDI GTCTC 3 cut(s) 592, 828, 964
BfaI CTAG 3 cut(s) 329, 407, 974
BfoI RGCGCY 2 cut(s) 240, 1099
BfuAI ACCTGC 1 cut(s) 1054
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 6 cut(s) 95, 154, 274, 325, 753, 1061
BlsI GCNGC 6 cut(s) 96, 155, 275, 326, 754, 1062
Bme1390I CCNGG 5 cut(s) 549, 570, 725, 734, 851
BmeRI GACNNNNNGTC 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 688, 791
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 6 cut(s) 147, 160, 176, 190, 191, 228
BmiI GGNNCC 8 cut(s) 149, 178, 192, 229, 486, 553, 759, 1074
BmrFI CCNGG 5 cut(s) 549, 570, 725, 734, 851
BmsI GCATC 1 cut(s) 480
BpiI GAAGAC 2 cut(s) 553, 846
Bpu10I CCTNAGC 2 cut(s) 184, 599
Bpu14I TTCGAA 3 cut(s) 288, 543, 564
BpuMI CCSGG 4 cut(s) 549, 570, 725, 851
BsaAI YACGTR 1 cut(s) 903
BsaHI GRCGYC 3 cut(s) 372, 579, 1016
BsaJI CCNNGG 2 cut(s) 322, 388
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 358, 410, 477, 600, 754
Bse118I RCCGGY 3 cut(s) 173, 233, 446
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 2 cut(s) 322, 388
BseGI GGATG 2 cut(s) 10, 733
BseLI CCNNNNNNNGG 6 cut(s) 157, 358, 410, 477, 600, 754
BseMII CTCAG 2 cut(s) 198, 613
BseRI GAGGAG 3 cut(s) 114, 377, 876
BseSI GKGCMC 2 cut(s) 194, 792
BseX3I CGGCCG 1 cut(s) 591
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 1 cut(s) 748
Bsh1236I CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
Bsh1285I CGRYCG 2 cut(s) 594, 850
BshNI GGYRCC 1 cut(s) 484
BsiEI CGRYCG 2 cut(s) 594, 850
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 2 cut(s) 688, 791
BslFI GGGAC 3 cut(s) 232, 359, 974
BslI CCNNNNNNNGG 6 cut(s) 157, 358, 410, 477, 600, 754
BsmAI GTCTC 3 cut(s) 592, 828, 964
BsmBI CGTCTC 2 cut(s) 592, 828
BsmFI GGGAC 3 cut(s) 232, 359, 974
BsoBI CYCGRG 2 cut(s) 688, 791
Bsp119I TTCGAA 3 cut(s) 288, 543, 564
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 194, 600, 792
Bsp143I GATC 3 cut(s) 551, 888, 933
BspCNI CTCAG 2 cut(s) 197, 612
BspFNI CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
BspLI GGNNCC 8 cut(s) 149, 178, 192, 229, 486, 553, 759, 1074
BspMI ACCTGC 1 cut(s) 1054
BspPI GGATC 3 cut(s) 546, 559, 928
BspT104I TTCGAA 3 cut(s) 288, 543, 564
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 4 cut(s) 97, 156, 856, 1060
BsrFI RCCGGY 3 cut(s) 173, 233, 446
BssAI RCCGGY 3 cut(s) 173, 233, 446
BssECI CCNNGG 2 cut(s) 322, 388
BssMI GATC 3 cut(s) 551, 888, 933
BssNI GRCGYC 3 cut(s) 372, 579, 1016
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 2 cut(s) 540, 942
Bst6I CTCTTC 2 cut(s) 867, 911
BstACI GRCGYC 3 cut(s) 372, 579, 1016
BstBAI YACGTR 1 cut(s) 903
BstBI TTCGAA 3 cut(s) 288, 543, 564
BstC8I GCNNGC 4 cut(s) 190, 241, 271, 912
BstDEI CTNAG 2 cut(s) 184, 599
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 10, 733
BstFNI CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
BstH2I RGCGCY 2 cut(s) 240, 1099
BstHHI GCGC 4 cut(s) 239, 440, 1082, 1098
BstKTI GATC 3 cut(s) 554, 891, 936
BstMAI GTCTC 3 cut(s) 592, 828, 964
BstMBI GATC 3 cut(s) 551, 888, 933
BstMCI CGRYCG 2 cut(s) 594, 850
BstMWI GCNNNNNNNGC 7 cut(s) 167, 236, 249, 530, 986, 995, 1004
BstNI CCWGG 1 cut(s) 734
BstSCI CCNGG 5 cut(s) 547, 568, 723, 732, 849
BstSLI GKGCMC 2 cut(s) 194, 792
BstUI CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
BstV1I GCAGC 1 cut(s) 739
BstV2I GAAGAC 2 cut(s) 553, 846
BstX2I RGATCY 2 cut(s) 551, 933
BstYI RGATCY 2 cut(s) 551, 933
BstZI CGGCCG 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 322
BtgZI GCGATG 2 cut(s) 539, 1022
BtrI CACGTC 1 cut(s) 631
BtsCI GGATG 2 cut(s) 10, 733
BveI ACCTGC 1 cut(s) 1054
Cac8I GCNNGC 4 cut(s) 190, 241, 271, 912
CfoI GCGC 4 cut(s) 239, 440, 1082, 1098
Cfr10I RCCGGY 3 cut(s) 173, 233, 446
Cfr13I GGNCC 6 cut(s) 147, 160, 176, 190, 191, 228
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 5 cut(s) 361, 587, 986, 995, 1024
Csp6I GTAC 1 cut(s) 604
CviAII CATG 2 cut(s) 166, 223
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 2 cut(s) 184, 599
DpnI GATC 3 cut(s) 553, 890, 935
DpnII GATC 3 cut(s) 551, 888, 933
DraI TTTAAA 1 cut(s) 811
DrdI GACNNNNNNGTC 1 cut(s) 584
DriI GACNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 4 cut(s) 168, 591, 708, 730
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 867, 911
Eam1105I GACNNNNNGTC 1 cut(s) 371
EarI CTCTTC 2 cut(s) 867, 911
EciI GGCGGA 1 cut(s) 1047
Ecl136II GAGCTC 1 cut(s) 598
EclXI CGGCCG 1 cut(s) 591
Eco24I GRGCYC 2 cut(s) 194, 600
Eco47III AGCGCT 1 cut(s) 1097
Eco52I CGGCCG 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 598
Eco72I CACGTG 1 cut(s) 903
Eco88I CYCGRG 2 cut(s) 688, 791
EcoICRI GAGCTC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 732
EcoT38I GRGCYC 2 cut(s) 194, 600
Esp3I CGTCTC 2 cut(s) 592, 828
FaeI CATG 2 cut(s) 169, 226
FaiI YATR 5 cut(s) 66, 167, 224, 868, 1054
FalI AAGNNNNNCTT 3 cut(s) 195, 227, 1085
FaqI GGGAC 3 cut(s) 232, 359, 974
FatI CATG 2 cut(s) 165, 222
FauI CCCGC 6 cut(s) 99, 158, 181, 257, 433, 494
FbaI TGATCA 1 cut(s) 888
FblI GTMKAC 2 cut(s) 672, 1013
Fnu4HI GCNGC 6 cut(s) 95, 154, 274, 325, 753, 1061
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 2 cut(s) 194, 600
Fsp4HI GCNGC 6 cut(s) 95, 154, 274, 325, 753, 1061
FspBI CTAG 3 cut(s) 329, 407, 974
GlaI GCGC 4 cut(s) 238, 439, 1081, 1097
GluI GCNGC 6 cut(s) 95, 154, 274, 325, 753, 1061
GsaI CCCAGC 1 cut(s) 752
HaeII RGCGCY 2 cut(s) 240, 1099
HgaI GACGC 5 cut(s) 361, 587, 986, 995, 1024
HhaI GCGC 4 cut(s) 239, 440, 1082, 1098
Hin1I GRCGYC 3 cut(s) 372, 579, 1016
Hin1II CATG 2 cut(s) 169, 226
Hin6I GCGC 4 cut(s) 237, 438, 1080, 1096
HinP1I GCGC 4 cut(s) 237, 438, 1080, 1096
HincII GTYRAC 4 cut(s) 298, 648, 673, 1014
HindII GTYRAC 4 cut(s) 298, 648, 673, 1014
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 366, 669, 686
HphI GGTGA 5 cut(s) 125, 328, 412, 892, 898
Hpy166II GTNNAC 6 cut(s) 298, 628, 648, 673, 798, 1014
Hpy188I TCNGA 4 cut(s) 304, 477, 762, 1048
Hpy188III TCNNGA 1 cut(s) 690
Hpy8I GTNNAC 6 cut(s) 298, 628, 648, 673, 798, 1014
Hpy99I CGWCG 7 cut(s) 446, 500, 581, 677, 704, 848, 1018
HpyAV CCTTC 3 cut(s) 292, 475, 523
HpyCH4III ACNGT 2 cut(s) 540, 942
HpyCH4IV ACGT 2 cut(s) 630, 902
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 236, 249, 530, 986, 995, 1004
HpyF3I CTNAG 2 cut(s) 184, 599
HpySE526I ACGT 2 cut(s) 630, 902
Hsp92I GRCGYC 3 cut(s) 372, 579, 1016
Hsp92II CATG 2 cut(s) 169, 226
HspAI GCGC 4 cut(s) 237, 438, 1080, 1096
Ksp22I TGATCA 1 cut(s) 888
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 3 cut(s) 551, 888, 933
LmnI GCTCC 5 cut(s) 102, 354, 853, 863, 1057
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 1 cut(s) 480
MaeI CTAG 3 cut(s) 329, 407, 974
MaeII ACGT 2 cut(s) 630, 902
MalI GATC 3 cut(s) 553, 890, 935
MbiI CCGCTC 4 cut(s) 97, 156, 856, 1060
MboI GATC 3 cut(s) 551, 888, 933
MboII GAAGA 8 cut(s) 210, 277, 553, 851, 884, 928, 943, 1096
MfeI CAATTG 1 cut(s) 607
MflI RGATCY 2 cut(s) 551, 933
MhlI GDGCHC 3 cut(s) 194, 600, 792
MlsI TGGCCA 2 cut(s) 170, 732
MluCI AATT 3 cut(s) 49, 61, 607
MluI ACGCGT 1 cut(s) 987
MluNI TGGCCA 2 cut(s) 170, 732
MlyI GAGTC 3 cut(s) 360, 678, 680
MmeI TCCRAC 2 cut(s) 327, 785
Mox20I TGGCCA 2 cut(s) 170, 732
MroXI GAANNNNTTC 1 cut(s) 1097
MscI TGGCCA 2 cut(s) 170, 732
MseI TTAA 2 cut(s) 810, 944
Msp20I TGGCCA 2 cut(s) 170, 732
MspA1I CMGCKG 4 cut(s) 188, 324, 752, 910
MspR9I CCNGG 5 cut(s) 549, 570, 725, 734, 851
MunI CAATTG 1 cut(s) 607
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 6 cut(s) 324, 438, 524, 533, 989, 1082
MwoI GCNNNNNNNGC 7 cut(s) 167, 236, 249, 530, 986, 995, 1004
NciI CCSGG 4 cut(s) 549, 570, 725, 851
NdeII GATC 3 cut(s) 551, 888, 933
NlaIII CATG 2 cut(s) 169, 226
NlaIV GGNNCC 8 cut(s) 149, 178, 192, 229, 486, 553, 759, 1074
NmeAIII GCCGAG 6 cut(s) 137, 348, 369, 569, 619, 736
NspV TTCGAA 3 cut(s) 288, 543, 564
PaqCI CACCTGC 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 6 cut(s) 300, 396, 582, 681, 708, 843
PdmI GAANNNNTTC 1 cut(s) 1097
PkrI GCNGC 6 cut(s) 96, 155, 275, 326, 754, 1062
PleI GAGTC 3 cut(s) 360, 677, 680
PmaCI CACGTG 1 cut(s) 903
PmlI CACGTG 1 cut(s) 903
PpsI GAGTC 3 cut(s) 360, 677, 680
Ppu21I YACGTR 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 732
PspCI CACGTG 1 cut(s) 903
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 8 cut(s) 149, 178, 192, 229, 486, 553, 759, 1074
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 6 cut(s) 147, 160, 176, 190, 191, 228
PsuI RGATCY 2 cut(s) 551, 933
PvuII CAGCTG 2 cut(s) 752, 910
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SacI GAGCTC 1 cut(s) 600
SacII CCGCGG 1 cut(s) 325
SalI GTCGAC 2 cut(s) 671, 1012
SaqAI TTAA 2 cut(s) 810, 944
SatI GCNGC 6 cut(s) 95, 154, 274, 325, 753, 1061
Sau3AI GATC 3 cut(s) 551, 888, 933
Sau96I GGNCC 6 cut(s) 147, 160, 176, 190, 191, 228
SchI GAGTC 3 cut(s) 360, 678, 680
ScrFI CCNGG 5 cut(s) 549, 570, 725, 734, 851
SduI GDGCHC 3 cut(s) 194, 600, 792
SfaNI GCATC 1 cut(s) 480
SfiI GGCCNNNNNGGCC 1 cut(s) 167
Sfr303I CCGCGG 1 cut(s) 325
SfuI TTCGAA 3 cut(s) 288, 543, 564
SgrAI CRCCGGYG 1 cut(s) 233
SgrBI CCGCGG 1 cut(s) 325
Sse9I AATT 3 cut(s) 49, 61, 607
SspI AATATT 1 cut(s) 656
SspMI CTAG 3 cut(s) 329, 407, 974
SstI GAGCTC 1 cut(s) 600
StyD4I CCNGG 5 cut(s) 547, 568, 723, 732, 849
TaaI ACNGT 2 cut(s) 540, 942
TaiI ACGT 2 cut(s) 633, 905
TasI AATT 3 cut(s) 49, 61, 607
TauI GCSGC 5 cut(s) 97, 156, 276, 327, 1063
Tru1I TTAA 2 cut(s) 810, 944
Tru9I TTAA 2 cut(s) 810, 944
TseI GCWGC 1 cut(s) 752
TspDTI ATGAA 1 cut(s) 505
TspGWI ACGGA 4 cut(s) 574, 665, 982, 998
XmiI GTMKAC 2 cut(s) 672, 1013
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 3 cut(s) 329, 407, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.