Rh5BG204700

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
23227012 .. 23229224
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG204700.1

Sequence Viewer

Length: 939 bp
ATGGACTTCTCCGGCCCAAAACCAAACGGCCCACAACGTAAAGACAAGCTCCTCGTCATCATGGGCGCCACCGGCGCCGGCAAGTCGCGCCTCTCCCTCGACCTCGCCGCCCGGTTCCCTCCGGCCACCTTCGAAGTCATCAACGCCGACAAAATGCAGGTCTACAAGGGACTCGACATCACCACCAACAAGCTCTCCGCTCCCGAACGGCGCGTCGTTCCGCACCATCTTCTCGGCGAGTTCGACTCCCGCGACGGCGACGTCACCCCCGCCGAGTTTCGCCGACTCGCGGCTCAGGCTGTGTCTAGCGTCGTCTCCCGGAGCAAAGTACCGGTGCTCGTCGGCGGGTCCAACTCGTTCATCCACGCGCTCGTAGTCGACCCGTTCGAACCGGACTGTGATGTATTTAACGGCGAGTCTGTAACGGTAGCGGTCTCGTCGGAGCTCAGGTACGACTGCTGCTTTCTCTGGGTCGACGTGTCGCTGCCGGTGTTGACGGAGTACTTGTCGCAGCGAGTGGAGGAAATGCTCGACTCGGGGATGTTCCACGAGCTGGCCGAGTTCTACGGGGAAAACTCGGCGGGTCGAACCGCTCTGAGGAAGGCGATCGGAGTGGCGGAGTTCAGCCGGTACTTTAAGGAGTACCCGCCGCCACCAGCGGCGGAGGATGAAGATCCGGTGCGGCGGGGAGCATATGATGAGGCGGTGGGGGAGATTAAAAAGAACACGCGTCGGCTGGCGAAGAGGCAGATCGGAAAGATTGCGAGGCTGAGGAAGGCGGGGTGGGACCTACGGAGGCTGGACGCGACGGAGGCGTTTAGGGCGGCGGTGACGTCAGATGACGAGGAAGAGGGGAAGAGGTGGTCGGAGATTTGGGAGCGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAGGCATTTCTTGGTGGATGAGGAGTAG

Protein Analysis

312

Amino Acids

34.89

Weight (kDa)

5.5

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 17 - 130 2.7e-07 Isopentenyl transferase
IPPT PF01715 53 - 127 6.1e-17 IPP transferase
IPPT PF01715 148 - 251 1.9e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 2 cut(s) 264, 836
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 65, 74
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 2 cut(s) 200, 593
AccI GTMKAC 3 cut(s) 162, 378, 474
AccII CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 2 cut(s) 123, 555
AcyI GRCGYC 4 cut(s) 66, 75, 261, 833
AfaI GTAC 5 cut(s) 330, 452, 503, 632, 644
AfiI CCNNNNNNNGG 3 cut(s) 289, 553, 597
AflIII ACRYGT 2 cut(s) 477, 728
AgeI ACCGGT 1 cut(s) 331
AjiI CACGTC 1 cut(s) 478
AluBI AGCT 4 cut(s) 49, 193, 445, 553
AluI AGCT 4 cut(s) 49, 193, 445, 553
Alw21I GWGCWC 2 cut(s) 339, 447
Alw26I GTCTC 2 cut(s) 319, 439
AlwI GGATC 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 4 cut(s) 13, 28, 123, 555
ApeKI GCWGC 3 cut(s) 459, 484, 511
ArsI GACNNNNNNTTYG 4 cut(s) 144, 176, 198, 230
AsiGI ACCGGT 1 cut(s) 331
AspLEI GCGC 5 cut(s) 68, 77, 90, 213, 370
AspS9I GGNCC 4 cut(s) 14, 29, 348, 787
AsuC2I CCSGG 2 cut(s) 112, 319
AsuHPI GGTGA 3 cut(s) 172, 256, 841
AsuII TTCGAA 2 cut(s) 132, 387
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 2 cut(s) 348, 787
BanI GGYRCC 2 cut(s) 65, 74
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 339, 447
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 3 cut(s) 446, 471, 523
BccI CCATC 1 cut(s) 234
BceAI ACGGC 4 cut(s) 43, 224, 271, 427
BcnI CCSGG 2 cut(s) 112, 319
BcoDI GTCTC 2 cut(s) 319, 439
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 2 cut(s) 69, 78
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 9 cut(s) 108, 291, 460, 485, 512, 650, 660, 683, 825
BlsI GCNGC 9 cut(s) 109, 292, 461, 486, 513, 651, 661, 684, 826
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 112, 319
Bme18I GGWCC 2 cut(s) 348, 787
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 4 cut(s) 14, 29, 348, 787
BmiI GGNNCC 5 cut(s) 67, 76, 116, 349, 788
BmrFI CCNGG 2 cut(s) 112, 319
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 3 cut(s) 294, 446, 770
Bpu14I TTCGAA 2 cut(s) 132, 387
BpuMI CCSGG 2 cut(s) 112, 319
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 4 cut(s) 66, 75, 261, 833
BsaI GGTCTC 1 cut(s) 439
BsaWI WCCGGW 3 cut(s) 331, 391, 676
BsaXI ACNNNNNCTCC 6 cut(s) 179, 209, 434, 464, 491, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 553, 597
Bse118I RCCGGY 5 cut(s) 71, 77, 331, 487, 627
Bse8I GATNNNNATC 1 cut(s) 672
BseGI GGATG 4 cut(s) 360, 546, 673, 934
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 289, 553, 597
BseMII CTCAG 4 cut(s) 308, 460, 587, 761
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 446, 471, 523
Bsh1236I CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
Bsh1285I CGRYCG 1 cut(s) 609
BshFI GGCC 4 cut(s) 15, 30, 125, 557
BshNI GGYRCC 2 cut(s) 65, 74
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 609
BsiHKAI GWGCWC 2 cut(s) 339, 447
BsiHKCI CYCGRG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 183, 800
BslI CCNNNNNNNGG 3 cut(s) 289, 553, 597
BsmAI GTCTC 2 cut(s) 319, 439
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 183, 800
BsnI GGCC 4 cut(s) 15, 30, 125, 557
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 535
Bsp119I TTCGAA 2 cut(s) 132, 387
Bsp1286I GDGCHC 2 cut(s) 339, 447
Bsp143I GATC 3 cut(s) 606, 673, 750
BspANI GGCC 4 cut(s) 15, 30, 125, 557
BspCNI CTCAG 4 cut(s) 307, 459, 588, 762
BspFNI CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
BspLI GGNNCC 5 cut(s) 67, 76, 116, 349, 788
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 668
BspT104I TTCGAA 2 cut(s) 132, 387
BspT107I GGYRCC 2 cut(s) 65, 74
BspTNI GGTCTC 1 cut(s) 439
BsrBI CCGCTC 2 cut(s) 200, 593
BsrFI RCCGGY 5 cut(s) 71, 77, 331, 487, 627
BssAI RCCGGY 5 cut(s) 71, 77, 331, 487, 627
BssMI GATC 3 cut(s) 606, 673, 750
BssNI GRCGYC 4 cut(s) 66, 75, 261, 833
BssSI CACGAG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 548
Bst4CI ACNGT 2 cut(s) 398, 427
Bst6I CTCTTC 3 cut(s) 737, 843, 851
BstACI GRCGYC 4 cut(s) 66, 75, 261, 833
BstBI TTCGAA 2 cut(s) 132, 387
BstC8I GCNNGC 3 cut(s) 79, 555, 738
BstDEI CTNAG 4 cut(s) 294, 446, 596, 770
BstF5I GGATG 4 cut(s) 360, 546, 673, 934
BstFNI CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
BstH2I RGCGCY 2 cut(s) 69, 78
BstHHI GCGC 5 cut(s) 68, 77, 90, 213, 370
BstKTI GATC 3 cut(s) 609, 676, 753
BstMAI GTCTC 2 cut(s) 319, 439
BstMBI GATC 3 cut(s) 606, 673, 750
BstMCI CGRYCG 1 cut(s) 609
BstMWI GCNNNNNNNGC 6 cut(s) 72, 74, 87, 296, 812, 821
BstSCI CCNGG 2 cut(s) 110, 317
BstUI CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
BstV1I GCAGC 3 cut(s) 446, 471, 523
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 4 cut(s) 15, 30, 125, 557
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 4 cut(s) 360, 546, 673, 934
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 79, 555, 738
CfoI GCGC 5 cut(s) 68, 77, 90, 213, 370
Cfr10I RCCGGY 5 cut(s) 71, 77, 331, 487, 627
Cfr13I GGNCC 4 cut(s) 14, 29, 348, 787
CseI GACGC 4 cut(s) 202, 298, 719, 812
Csp6I GTAC 5 cut(s) 329, 451, 502, 631, 643
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 1 cut(s) 61
CviQI GTAC 5 cut(s) 329, 451, 502, 631, 643
DdeI CTNAG 4 cut(s) 294, 446, 596, 770
DinI GGCGCC 2 cut(s) 67, 76
DpnI GATC 3 cut(s) 608, 675, 752
DpnII GATC 3 cut(s) 606, 673, 750
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 123, 555
Eam1104I CTCTTC 3 cut(s) 737, 843, 851
EarI CTCTTC 3 cut(s) 737, 843, 851
EciI GGCGGA 2 cut(s) 632, 677
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 348, 787
Eco53kI GAGCTC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 447
EgeI GGCGCC 2 cut(s) 67, 76
EheI GGCGCC 2 cut(s) 67, 76
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 694, 696
FaqI GGGAC 2 cut(s) 183, 800
FatI CATG 1 cut(s) 60
FauI CCCGC 7 cut(s) 257, 277, 338, 574, 654, 678, 772
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 3 cut(s) 162, 378, 474
Fnu4HI GCNGC 9 cut(s) 108, 291, 460, 485, 512, 650, 660, 683, 825
FokI GGATG 3 cut(s) 347, 553, 680
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 9 cut(s) 108, 291, 460, 485, 512, 650, 660, 683, 825
FspBI CTAG 1 cut(s) 306
GlaI GCGC 5 cut(s) 67, 76, 89, 212, 369
GluI GCNGC 9 cut(s) 108, 291, 460, 485, 512, 650, 660, 683, 825
HaeII RGCGCY 2 cut(s) 69, 78
HaeIII GGCC 4 cut(s) 15, 30, 125, 557
HgaI GACGC 4 cut(s) 202, 298, 719, 812
HhaI GCGC 5 cut(s) 68, 77, 90, 213, 370
Hin1I GRCGYC 4 cut(s) 66, 75, 261, 833
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 5 cut(s) 66, 75, 88, 211, 368
HinP1I GCGC 5 cut(s) 66, 75, 88, 211, 368
HincII GTYRAC 3 cut(s) 379, 475, 495
HindII GTYRAC 3 cut(s) 379, 475, 495
HinfI GANTC 5 cut(s) 171, 245, 285, 416, 533
HphI GGTGA 3 cut(s) 172, 256, 841
Hpy166II GTNNAC 4 cut(s) 163, 379, 475, 495
Hpy188I TCNGA 6 cut(s) 442, 597, 611, 755, 838, 868
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 4 cut(s) 163, 379, 475, 495
Hpy99I CGWCG 9 cut(s) 218, 257, 263, 314, 344, 442, 479, 735, 811
HpyAV CCTTC 3 cut(s) 139, 595, 769
HpyCH4III ACNGT 2 cut(s) 398, 427
HpyCH4IV ACGT 4 cut(s) 37, 261, 477, 833
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 74, 87, 296, 812, 821
HpyF3I CTNAG 4 cut(s) 294, 446, 596, 770
HpySE526I ACGT 4 cut(s) 37, 261, 477, 833
Hsp92I GRCGYC 4 cut(s) 66, 75, 261, 833
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 5 cut(s) 66, 75, 88, 211, 368
KasI GGCGCC 2 cut(s) 65, 74
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 3 cut(s) 606, 673, 750
LmnI GCTCC 6 cut(s) 54, 205, 321, 442, 689, 877
Lsp1109I GCAGC 3 cut(s) 446, 471, 523
MaeI CTAG 1 cut(s) 306
MaeII ACGT 4 cut(s) 37, 261, 477, 833
MaeIII GTNAC 3 cut(s) 262, 421, 829
MalI GATC 3 cut(s) 608, 675, 752
MbiI CCGCTC 2 cut(s) 200, 593
MboI GATC 3 cut(s) 606, 673, 750
MboII GAAGA 6 cut(s) 221, 683, 754, 860, 868, 916
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 339, 447
MluI ACGCGT 1 cut(s) 728
Mly113I GGCGCC 2 cut(s) 66, 75
MlyI GAGTC 5 cut(s) 165, 239, 279, 425, 527
MmeI TCCRAC 3 cut(s) 375, 420, 846
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 3 cut(s) 408, 636, 717
MspA1I CMGCKG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 112, 319
MvnI CGCG 7 cut(s) 88, 213, 252, 290, 368, 730, 806
MwoI GCNNNNNNNGC 6 cut(s) 72, 74, 87, 296, 812, 821
NaeI GCCGGC 1 cut(s) 79
NarI GGCGCC 2 cut(s) 66, 75
NciI CCSGG 2 cut(s) 112, 319
NdeI CATATG 1 cut(s) 694
NdeII GATC 3 cut(s) 606, 673, 750
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 5 cut(s) 67, 76, 116, 349, 788
NmeAIII GCCGAG 4 cut(s) 213, 298, 557, 583
NmuCI GTSAC 2 cut(s) 262, 829
NspV TTCGAA 2 cut(s) 132, 387
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 249, 384, 555
PdiI GCCGGC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 9 cut(s) 109, 292, 461, 486, 513, 651, 661, 684, 826
Ple19I CGATCG 1 cut(s) 609
PleI GAGTC 5 cut(s) 165, 239, 279, 424, 527
PluTI GGCGCC 2 cut(s) 69, 78
PpsI GAGTC 5 cut(s) 165, 239, 279, 424, 527
PpuMI RGGWCCY 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 787
PspN4I GGNNCC 5 cut(s) 67, 76, 116, 349, 788
PspPI GGNCC 4 cut(s) 14, 29, 348, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 673
PvuI CGATCG 1 cut(s) 609
RsaI GTAC 5 cut(s) 330, 452, 503, 632, 644
RsaNI GTAC 5 cut(s) 329, 451, 502, 631, 643
SacI GAGCTC 1 cut(s) 447
SalI GTCGAC 2 cut(s) 377, 473
SaqAI TTAA 3 cut(s) 408, 636, 717
SatI GCNGC 9 cut(s) 108, 291, 460, 485, 512, 650, 660, 683, 825
Sau3AI GATC 3 cut(s) 606, 673, 750
Sau96I GGNCC 4 cut(s) 14, 29, 348, 787
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 5 cut(s) 165, 239, 279, 425, 527
ScrFI CCNGG 2 cut(s) 112, 319
SduI GDGCHC 2 cut(s) 339, 447
SfoI GGCGCC 2 cut(s) 67, 76
SfuI TTCGAA 2 cut(s) 132, 387
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 348, 787
SspDI GGCGCC 2 cut(s) 65, 74
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 110, 317
TaaI ACNGT 2 cut(s) 398, 427
TaiI ACGT 4 cut(s) 40, 264, 480, 836
TaqI TCGA 9 cut(s) 99, 132, 174, 243, 378, 387, 474, 531, 586
TatI WGTACW 1 cut(s) 501
TauI GCSGC 6 cut(s) 110, 293, 652, 662, 685, 827
Tru1I TTAA 3 cut(s) 408, 636, 717
Tru9I TTAA 3 cut(s) 408, 636, 717
TseFI GTSAC 2 cut(s) 262, 829
TseI GCWGC 3 cut(s) 459, 484, 511
Tsp45I GTSAC 2 cut(s) 262, 829
TspDTI ATGAA 2 cut(s) 349, 684
TspGWI ACGGA 3 cut(s) 512, 808, 824
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 348, 787
XmiI GTMKAC 3 cut(s) 162, 378, 474
XspI CTAG 1 cut(s) 306
ZraI GACGTC 2 cut(s) 262, 834
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.