Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Reverse (-)

56127024 .. 56139134

Gene Structure 12111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTCGTTGTCGGTGTTGACGGCGTACTTGTCGCAGCGAGTGGAGGAAATGCGCGACTTGGGGATGTTTCTCGAGCTGGCAGAGTTCTACGAGGAAAACTCGGCGAGTCAAACCAATCTAAGAAAGGAAATCAGACTGGTGGAGTTTGGTCAGTATTTTAAAGAGTACCCGCCTCCGATTAATTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

63

Amino Acids

7.55

Weight (kDa)

4.61

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	170
AfaI	GTAC	2 cut(s)	26, 167
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bse1I	ACTGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	71
BspACI	CCGC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	25, 166
CviJI	RGCY	1 cut(s)	76
CviKI_1	RGCY	1 cut(s)	76
CviQI	GTAC	2 cut(s)	25, 166
DdeI	CTNAG	1 cut(s)	119
DraI	TTTAAA	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	71
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	35
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	134, 177
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	62, 122
Lsp1109I	GCAGC	1 cut(s)	46
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	37, 85, 183
MseI	TTAA	3 cut(s)	159, 180, 190
MvnI	CGCG	1 cut(s)	54
NmeAIII	GCCGAG	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	180
RsaI	GTAC	2 cut(s)	26, 167
RsaNI	GTAC	2 cut(s)	25, 166
SaqAI	TTAA	3 cut(s)	159, 180, 190
SatI	GCNGC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	115
SetI	ASST	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	170
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	159, 180, 190
Tru9I	TTAA	3 cut(s)	159, 180, 190
TseI	GCWGC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.