Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Reverse (-)

233798 .. 235446

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcattcacgcctgaagacggcaacgtcacccccgccgactttcaacgagtagcgactcaggcagtttctagcattgtaacctggagcaaagtaccggtgcttgtcggcggctccaactcgttcatccacgggctcgtagtcgaccagttcgagccgaattgtgatgtggtaaagataacgcttgccgagttctacgaggaaaacttagcgggtcgaactagtttgagaaaggtaatcggagtggcggagtttggtaggtattttaaagagtacacactgccggtggcggaggaggacgatgatccgcttgccgagttctacgaggaaaacttagcgggtcgaactagtttgagaaaggtaatcggagtggcggagtttggtaggtattttaaagagtacacactgccggtggcggaggaggacgatgatccggtgcccagagcattttctggacctccgactaggttttcaaagaagttaggtgggcagcggcctatgatcggaatccggcaaccaccgaccggagtcccgcggccagtgaccagactccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

185

Amino Acids

20.53

Weight (kDa)

5.05

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	535
AclWI	GGATC	2 cut(s)	299, 425
AcoI	YGGCCR	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	96, 275, 401
AfiI	CCNNNNNNNGG	3 cut(s)	20, 503, 524
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	47, 474
AhlI	ACTAGT	2 cut(s)	221, 347
AjnI	CCWGG	1 cut(s)	83
AlwI	GGATC	2 cut(s)	299, 425
AoxI	GGCC	2 cut(s)	494, 536
ApeKI	GCWGC	1 cut(s)	490
AsiGI	ACCGGT	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	502
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	85
BcuI	ACTAGT	2 cut(s)	221, 347
BfaI	CTAG	4 cut(s)	72, 222, 348, 465
BisI	GCNGC	4 cut(s)	112, 491, 494, 536
BlsI	GCNGC	4 cut(s)	113, 492, 495, 537
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	115, 438
BmrFI	CCNGG	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	106, 536
BsaBI	GATNNNNATC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	130, 533
BsaWI	WCCGGW	3 cut(s)	97, 433, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 503, 524
Bse118I	RCCGGY	3 cut(s)	97, 283, 409
Bse1I	ACTGG	3 cut(s)	148, 539, 553
Bse8I	GATNNNNATC	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	130, 533
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	3 cut(s)	20, 503, 524
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	3 cut(s)	148, 539, 553
BseRI	GAGGAG	2 cut(s)	308, 434
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	535
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	496, 538
BshNI	GGYRCC	1 cut(s)	436
BshTI	ACCGGT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	525
BsiSI	CCGG	6 cut(s)	98, 284, 410, 434, 511, 525
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	20, 503, 524
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	496, 538
Bsp1286I	GDGCHC	2 cut(s)	138, 441
Bsp143I	GATC	3 cut(s)	304, 430, 501
BspANI	GGCC	2 cut(s)	496, 538
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	115, 438
BspPI	GGATC	2 cut(s)	299, 425
BspT107I	GGYRCC	1 cut(s)	436
BsrFI	RCCGGY	3 cut(s)	97, 283, 409
BsrI	ACTGG	3 cut(s)	148, 539, 553
BssAI	RCCGGY	3 cut(s)	97, 283, 409
BssECI	CCNNGG	2 cut(s)	130, 533
BssMI	GATC	3 cut(s)	304, 430, 501
Bst2UI	CCWGG	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	186, 312
BstDEI	CTNAG	3 cut(s)	60, 208, 334
BstDSI	CCRYGG	2 cut(s)	130, 533
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	535
BstKTI	GATC	3 cut(s)	307, 433, 504
BstMBI	GATC	3 cut(s)	304, 430, 501
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	85
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	496, 538
BtgI	CCRYGG	2 cut(s)	130, 533
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	2 cut(s)	278, 404
BtsIMutI	CAGTG	3 cut(s)	278, 404, 546
Cac8I	GCNNGC	2 cut(s)	186, 312
Cfr10I	RCCGGY	3 cut(s)	97, 283, 409
Cfr13I	GGNCC	1 cut(s)	455
Cfr42I	CCGCGG	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	95, 274, 400
CspAI	ACCGGT	1 cut(s)	97
CviJI	RGCY	5 cut(s)	114, 136, 157, 496, 538
CviKI_1	RGCY	5 cut(s)	114, 136, 157, 496, 538
CviQI	GTAC	3 cut(s)	95, 274, 400
DdeI	CTNAG	3 cut(s)	60, 208, 334
DpnI	GATC	3 cut(s)	306, 432, 503
DpnII	GATC	3 cut(s)	304, 430, 501
DraI	TTTAAA	2 cut(s)	268, 394
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	536
EciI	GGCGGA	4 cut(s)	263, 305, 389, 431
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	138
FaiI	YATR	1 cut(s)	500
FaqI	GGGAC	1 cut(s)	515
FauI	CCCGC	4 cut(s)	43, 205, 331, 540
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	112, 491, 494, 536
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	112, 491, 494, 536
FspBI	CTAG	4 cut(s)	72, 222, 348, 465
GluI	GCNGC	4 cut(s)	112, 491, 494, 536
GsuI	CTGGAG	2 cut(s)	106, 536
HaeIII	GGCC	2 cut(s)	496, 538
HapII	CCGG	6 cut(s)	98, 284, 410, 434, 511, 525
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	58, 507, 528, 549
HpaII	CCGG	6 cut(s)	98, 284, 410, 434, 511, 525
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	145, 276, 402
Hpy188I	TCNGA	4 cut(s)	242, 368, 462, 506
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	3 cut(s)	145, 276, 402
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	60, 208, 334
HpySE526I	ACGT	1 cut(s)	27
KspI	CCGCGG	1 cut(s)	536
Kzo9I	GATC	3 cut(s)	304, 430, 501
LmnI	GCTCC	2 cut(s)	87, 119
Lsp1109I	GCAGC	1 cut(s)	502
MaeI	CTAG	4 cut(s)	72, 222, 348, 465
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	28, 79, 541
MalI	GATC	3 cut(s)	306, 432, 503
MboI	GATC	3 cut(s)	304, 430, 501
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	138, 441
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	3 cut(s)	52, 537, 543
MmeI	TCCRAC	2 cut(s)	141, 485
MnlI	CCTC	7 cut(s)	193, 286, 289, 319, 412, 415, 468
MseI	TTAA	2 cut(s)	267, 393
MspA1I	CMGCKG	2 cut(s)	493, 535
MspI	CCGG	6 cut(s)	98, 284, 410, 434, 511, 525
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	535
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	304, 430, 501
NlaIV	GGNNCC	2 cut(s)	115, 438
NmeAIII	GCCGAG	2 cut(s)	214, 340
NmuCI	GTSAC	2 cut(s)	28, 541
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	507
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	113, 492, 495, 537
PleI	GAGTC	3 cut(s)	52, 536, 543
PpsI	GAGTC	3 cut(s)	52, 536, 543
PshAI	GACNNNNGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	115, 438
PspPI	GGNCC	1 cut(s)	455
RsaI	GTAC	3 cut(s)	96, 275, 401
RsaNI	GTAC	3 cut(s)	95, 274, 400
SacII	CCGCGG	1 cut(s)	536
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	267, 393
SatI	GCNGC	4 cut(s)	112, 491, 494, 536
Sau3AI	GATC	3 cut(s)	304, 430, 501
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	3 cut(s)	52, 537, 543
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	138, 441
SetI	ASST	9 cut(s)	30, 86, 237, 263, 363, 389, 460, 470, 487
Sfr303I	CCGCGG	1 cut(s)	536
SgrBI	CCGCGG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	455
SpeI	ACTAGT	2 cut(s)	221, 347
Sse9I	AATT	1 cut(s)	160
SspMI	CTAG	4 cut(s)	72, 222, 348, 465
StyD4I	CCNGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	144, 153, 217, 343
TasI	AATT	1 cut(s)	160
TatI	WGTACW	2 cut(s)	273, 399
TauI	GCSGC	3 cut(s)	114, 496, 538
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	2 cut(s)	267, 393
Tru9I	TTAA	2 cut(s)	267, 393
TscAI	CASTG	3 cut(s)	285, 411, 546
TseFI	GTSAC	2 cut(s)	28, 541
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	28, 541
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	285, 411, 546
VpaK11BI	GGWCC	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	4 cut(s)	72, 222, 348, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.