Rw5G018760

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
24221997 .. 24222934
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018760.1

Sequence Viewer

Length: 906 bp
ATGGACTTCTCCGGCCCAAAACCAAACGCCCCACAACGTAAAGACAAGCTCCTCGTCATCATGGGCGCCACCGGCGCCGGCAAGTCGCGGCTCTCCCTCGACCTCGCCGCCCGCTTCCCTCCGGCCACCTTCGAAGTCATCAACGCCGACAAAATGCAGGTCTACAAGGGACTCGACATCACCACCAACAAGCTCTCCGCTCCCGAACGGCGAGTCGTTCCGCACCATCTTCTCGGCGAGTTCGACTCCCGCGACGGCGACGTCACCCCCGCCATGTTTCGCCGACTCGCGGCTCAGGCTGTGTCTAGCGTCGTCTCCCGGAGGAAAGTACCGGTGCTCGTCGGCGGGTCCAACTCGTTCATCCACGCGCTCGTAGTCGACCCGTTCGAACCGGACTCGGTCTCGTCGGAGCTCAGGTACGACTGCTGCTTTCTCTGGGTCGACGTGTCGCTGCCGGTGTTGACGGAGTACTTGTCGCAGCGAGTGGAGGAAATGCTCGACTCGGGGATGTTCCACGAGCTGGCCGAGTTCTACGGGGAAAACTCGGCGGGTCGAACCGCTCTGAGGAAGGCGATCGGAGTGGCGGAGTTCAGCCCGTACTTTAAGGAGTACCCGCCGCCACCAGCGGCGGAGGATGAAGATCCGGTGCGGCGGGGAGCATATGACAAGGCGGTGGGGGAGATTAAAAAGAACACGCGTCAGCTGGCGAAGAAGCAGATCGGAAAGATTGCGAGGCTGAGGAAGGCGGGGTGGGACCTACGGAGGCTGGACGCGACGGAGGCGTTTAGGGCGGCGGTGACGTCAGATGACGAGGAAGAGGGGAAGAGGTGGTCGGAGATTTGGGAGCGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAGGCATTTCTTGGTGGAGGAGGAGTAA

Protein Analysis

301

Amino Acids

33.74

Weight (kDa)

6.07

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 17 - 178 3.6e-07 Isopentenyl transferase
IPPT PF01715 53 - 129 7.8e-17 IPP transferase
IPPT PF01715 137 - 240 8.1e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 2 cut(s) 264, 803
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 65, 74
AccB7I CCANNNNNTGG 1 cut(s) 520
AccBSI CCGCTC 2 cut(s) 200, 560
AccI GTMKAC 3 cut(s) 162, 378, 441
AccII CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 2 cut(s) 123, 522
AcyI GRCGYC 4 cut(s) 66, 75, 261, 800
AfaI GTAC 5 cut(s) 330, 419, 470, 599, 611
AfiI CCNNNNNNNGG 3 cut(s) 289, 520, 564
AflIII ACRYGT 2 cut(s) 444, 695
AgeI ACCGGT 1 cut(s) 331
AjiI CACGTC 1 cut(s) 445
AluBI AGCT 5 cut(s) 49, 193, 412, 520, 703
AluI AGCT 5 cut(s) 49, 193, 412, 520, 703
Alw21I GWGCWC 2 cut(s) 339, 414
Alw26I GTCTC 2 cut(s) 319, 406
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 3 cut(s) 13, 123, 522
ApeKI GCWGC 3 cut(s) 426, 451, 478
ArsI GACNNNNNNTTYG 4 cut(s) 144, 176, 198, 230
AsiGI ACCGGT 1 cut(s) 331
AspLEI GCGC 3 cut(s) 68, 77, 370
AspS9I GGNCC 3 cut(s) 14, 348, 754
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 3 cut(s) 172, 256, 808
AsuII TTCGAA 2 cut(s) 132, 387
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 2 cut(s) 348, 754
BanI GGYRCC 2 cut(s) 65, 74
BanII GRGCYC 1 cut(s) 414
BauI CACGAG 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 339, 414
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 413, 438, 490
BccI CCATC 1 cut(s) 234
BceAI ACGGC 2 cut(s) 224, 271
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 319, 406
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 2 cut(s) 69, 78
BfuAI ACCTGC 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 348, 754
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 3 cut(s) 14, 348, 754
BmiI GGNNCC 4 cut(s) 67, 76, 349, 755
BmrFI CCNGG 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 3 cut(s) 294, 413, 737
Bpu14I TTCGAA 2 cut(s) 132, 387
BpuMI CCSGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 4 cut(s) 66, 75, 261, 800
BsaI GGTCTC 1 cut(s) 406
BsaWI WCCGGW 3 cut(s) 331, 391, 643
BsaXI ACNNNNNCTCC 7 cut(s) 179, 209, 401, 431, 458, 488, 887
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 520, 564
Bse118I RCCGGY 4 cut(s) 71, 77, 331, 454
Bse8I GATNNNNATC 1 cut(s) 639
BseGI GGATG 3 cut(s) 360, 513, 640
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 3 cut(s) 289, 520, 564
BseMII CTCAG 4 cut(s) 308, 427, 554, 728
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 413, 438, 490
Bsh1236I CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 3 cut(s) 15, 125, 524
BshNI GGYRCC 2 cut(s) 65, 74
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 576
BsiHKAI GWGCWC 2 cut(s) 339, 414
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 9 cut(s) 12, 72, 78, 122, 319, 332, 392, 455, 644
BslFI GGGAC 2 cut(s) 183, 767
BslI CCNNNNNNNGG 3 cut(s) 289, 520, 564
BsmAI GTCTC 2 cut(s) 319, 406
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 183, 767
BsnI GGCC 3 cut(s) 15, 125, 524
Bso31I GGTCTC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 502
Bsp119I TTCGAA 2 cut(s) 132, 387
Bsp1286I GDGCHC 2 cut(s) 339, 414
Bsp143I GATC 3 cut(s) 573, 640, 717
BspANI GGCC 3 cut(s) 15, 125, 524
BspCNI CTCAG 4 cut(s) 307, 426, 555, 729
BspFNI CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
BspLI GGNNCC 4 cut(s) 67, 76, 349, 755
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 635
BspT104I TTCGAA 2 cut(s) 132, 387
BspT107I GGYRCC 2 cut(s) 65, 74
BspTNI GGTCTC 1 cut(s) 406
BsrBI CCGCTC 2 cut(s) 200, 560
BsrFI RCCGGY 4 cut(s) 71, 77, 331, 454
BssAI RCCGGY 4 cut(s) 71, 77, 331, 454
BssMI GATC 3 cut(s) 573, 640, 717
BssNI GRCGYC 4 cut(s) 66, 75, 261, 800
BssSI CACGAG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 515
Bst6I CTCTTC 2 cut(s) 810, 818
BstACI GRCGYC 4 cut(s) 66, 75, 261, 800
BstBI TTCGAA 2 cut(s) 132, 387
BstC8I GCNNGC 4 cut(s) 79, 112, 522, 705
BstDEI CTNAG 4 cut(s) 294, 413, 563, 737
BstF5I GGATG 3 cut(s) 360, 513, 640
BstFNI CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
BstH2I RGCGCY 2 cut(s) 69, 78
BstHHI GCGC 3 cut(s) 68, 77, 370
BstKTI GATC 3 cut(s) 576, 643, 720
BstMAI GTCTC 2 cut(s) 319, 406
BstMBI GATC 3 cut(s) 573, 640, 717
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 779, 788
BstSCI CCNGG 1 cut(s) 317
BstUI CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
BstV1I GCAGC 3 cut(s) 413, 438, 490
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 3 cut(s) 15, 125, 524
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 360, 513, 640
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 79, 112, 522, 705
CfoI GCGC 3 cut(s) 68, 77, 370
Cfr10I RCCGGY 4 cut(s) 71, 77, 331, 454
Cfr13I GGNCC 3 cut(s) 14, 348, 754
CseI GACGC 3 cut(s) 298, 686, 779
Csp6I GTAC 5 cut(s) 329, 418, 469, 598, 610
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 2 cut(s) 61, 274
CviQI GTAC 5 cut(s) 329, 418, 469, 598, 610
DdeI CTNAG 4 cut(s) 294, 413, 563, 737
DinI GGCGCC 2 cut(s) 67, 76
DpnI GATC 3 cut(s) 575, 642, 719
DpnII GATC 3 cut(s) 573, 640, 717
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 123, 522
Eam1104I CTCTTC 2 cut(s) 810, 818
EarI CTCTTC 2 cut(s) 810, 818
EciI GGCGGA 2 cut(s) 599, 644
Ecl136II GAGCTC 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 348, 754
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 2 cut(s) 67, 76
EheI GGCGCC 2 cut(s) 67, 76
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 2 cut(s) 64, 277
FaiI YATR 4 cut(s) 62, 275, 661, 663
FaqI GGGAC 2 cut(s) 183, 767
FatI CATG 2 cut(s) 60, 273
FauI CCCGC 8 cut(s) 119, 257, 277, 338, 541, 621, 645, 739
FauNDI CATATG 1 cut(s) 661
FblI GTMKAC 3 cut(s) 162, 378, 441
FokI GGATG 3 cut(s) 347, 520, 647
FriOI GRGCYC 1 cut(s) 414
FspBI CTAG 1 cut(s) 306
GlaI GCGC 3 cut(s) 67, 76, 369
HaeII RGCGCY 2 cut(s) 69, 78
HaeIII GGCC 3 cut(s) 15, 125, 524
HapII CCGG 9 cut(s) 12, 72, 78, 122, 319, 332, 392, 455, 644
HgaI GACGC 3 cut(s) 298, 686, 779
HhaI GCGC 3 cut(s) 68, 77, 370
Hin1I GRCGYC 4 cut(s) 66, 75, 261, 800
Hin1II CATG 2 cut(s) 64, 277
Hin6I GCGC 3 cut(s) 66, 75, 368
HinP1I GCGC 3 cut(s) 66, 75, 368
HincII GTYRAC 3 cut(s) 379, 442, 462
HindII GTYRAC 3 cut(s) 379, 442, 462
HinfI GANTC 6 cut(s) 171, 213, 245, 285, 395, 500
HpaII CCGG 9 cut(s) 12, 72, 78, 122, 319, 332, 392, 455, 644
HphI GGTGA 3 cut(s) 172, 256, 808
Hpy166II GTNNAC 4 cut(s) 163, 379, 442, 462
Hpy188I TCNGA 6 cut(s) 409, 564, 578, 722, 805, 835
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 4 cut(s) 163, 379, 442, 462
Hpy99I CGWCG 7 cut(s) 257, 263, 314, 344, 409, 446, 778
HpyAV CCTTC 3 cut(s) 139, 562, 736
HpyCH4IV ACGT 4 cut(s) 37, 261, 444, 800
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 779, 788
HpyF3I CTNAG 4 cut(s) 294, 413, 563, 737
HpySE526I ACGT 4 cut(s) 37, 261, 444, 800
Hsp92I GRCGYC 4 cut(s) 66, 75, 261, 800
Hsp92II CATG 2 cut(s) 64, 277
HspAI GCGC 3 cut(s) 66, 75, 368
KasI GGCGCC 2 cut(s) 65, 74
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 3 cut(s) 573, 640, 717
LmnI GCTCC 5 cut(s) 54, 205, 409, 656, 844
Lsp1109I GCAGC 3 cut(s) 413, 438, 490
MaeI CTAG 1 cut(s) 306
MaeII ACGT 4 cut(s) 37, 261, 444, 800
MaeIII GTNAC 2 cut(s) 262, 796
MalI GATC 3 cut(s) 575, 642, 719
MbiI CCGCTC 2 cut(s) 200, 560
MboI GATC 3 cut(s) 573, 640, 717
MboII GAAGA 6 cut(s) 221, 650, 721, 827, 835, 883
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 339, 414
MluI ACGCGT 1 cut(s) 695
Mly113I GGCGCC 2 cut(s) 66, 75
MlyI GAGTC 6 cut(s) 165, 222, 239, 279, 389, 494
MmeI TCCRAC 3 cut(s) 375, 387, 813
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 2 cut(s) 603, 684
MspA1I CMGCKG 2 cut(s) 626, 703
MspI CCGG 9 cut(s) 12, 72, 78, 122, 319, 332, 392, 455, 644
MspR9I CCNGG 1 cut(s) 319
MvnI CGCG 6 cut(s) 88, 252, 290, 368, 697, 773
MwoI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 779, 788
NaeI GCCGGC 1 cut(s) 79
NarI GGCGCC 2 cut(s) 66, 75
NciI CCSGG 1 cut(s) 319
NdeI CATATG 1 cut(s) 661
NdeII GATC 3 cut(s) 573, 640, 717
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 64, 277
NlaIV GGNNCC 4 cut(s) 67, 76, 349, 755
NmeAIII GCCGAG 3 cut(s) 213, 524, 550
NmuCI GTSAC 2 cut(s) 262, 796
NspV TTCGAA 2 cut(s) 132, 387
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 249, 384, 522
PdiI GCCGGC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 331
Ple19I CGATCG 1 cut(s) 576
PleI GAGTC 6 cut(s) 165, 221, 239, 279, 389, 494
PluTI GGCGCC 2 cut(s) 69, 78
PpsI GAGTC 6 cut(s) 165, 221, 239, 279, 389, 494
PpuMI RGGWCCY 1 cut(s) 754
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 754
PspN4I GGNNCC 4 cut(s) 67, 76, 349, 755
PspPI GGNCC 3 cut(s) 14, 348, 754
PspPPI RGGWCCY 1 cut(s) 754
PsuI RGATCY 1 cut(s) 640
PsyI GACNNNGTC 1 cut(s) 398
PvuI CGATCG 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 5 cut(s) 330, 419, 470, 599, 611
RsaNI GTAC 5 cut(s) 329, 418, 469, 598, 610
SacI GAGCTC 1 cut(s) 414
SalI GTCGAC 2 cut(s) 377, 440
SaqAI TTAA 2 cut(s) 603, 684
Sau3AI GATC 3 cut(s) 573, 640, 717
Sau96I GGNCC 3 cut(s) 14, 348, 754
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 6 cut(s) 165, 222, 239, 279, 389, 494
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 339, 414
SfoI GGCGCC 2 cut(s) 67, 76
SfuI TTCGAA 2 cut(s) 132, 387
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 348, 754
SspDI GGCGCC 2 cut(s) 65, 74
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 317
TaiI ACGT 4 cut(s) 40, 264, 447, 803
TaqI TCGA 9 cut(s) 99, 132, 174, 243, 378, 387, 441, 498, 553
TaqII GACCGA 1 cut(s) 388
TatI WGTACW 1 cut(s) 468
TauI GCSGC 7 cut(s) 91, 110, 293, 619, 629, 652, 794
Tru1I TTAA 2 cut(s) 603, 684
Tru9I TTAA 2 cut(s) 603, 684
TseFI GTSAC 2 cut(s) 262, 796
TseI GCWGC 3 cut(s) 426, 451, 478
Tsp45I GTSAC 2 cut(s) 262, 796
TspDTI ATGAA 2 cut(s) 349, 651
TspGWI ACGGA 3 cut(s) 479, 775, 791
Tth111I GACNNNGTC 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 348, 754
XmiI GTMKAC 3 cut(s) 162, 378, 441
XspI CTAG 1 cut(s) 306
ZraI GACGTC 2 cut(s) 262, 801
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.