Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Reverse (-)

33273 .. 33718

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgcctgaagatgacacagccaagatggcgacatcatccccgtcgagtttcgacgagttgcagctcaggcgctccaacttgtgcatccacgggctcgtagtcgaccggatcgagttagattgtgatgtggtaactgtaacggtctcgttggagctcaggtacgagtattgctttctctgggtcaacatgtcgttgtcagtgttgacggtgtacttatcgcagcgagtggaggaaatgttagacttggggatgtttcttgaggtggccgagttctacaaggaaaactctgcgggtcaaaccaaactacgaaaggaaatcggagtggcggagttcggtcagtattttaaagagtacccgctccggtggcggaagaggacgatgatcttgtgcccaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

132

Amino Acids

15.39

Weight (kDa)

4.93

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	290, 326, 356, 367
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	161, 212, 353
AflIII	ACRYGT	1 cut(s)	186
AluBI	AGCT	2 cut(s)	64, 154
AluI	AGCT	2 cut(s)	64, 154
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	61, 220
AspLEI	GCGC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	96, 156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	73, 232
BccI	CCATC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	148
BfoI	RGCGCY	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	62, 221
BlsI	GCNGC	2 cut(s)	63, 222
BmsI	GCATC	1 cut(s)	93
Bpu10I	CCTNAGC	2 cut(s)	65, 155
BpuEI	CTTGAG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	2 cut(s)	105, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 221, 251
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	35, 84, 255
BseMII	CTCAG	2 cut(s)	79, 169
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	73, 232
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	106, 361
BsmAI	GTCTC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	96, 156, 392
Bsp143I	GATC	2 cut(s)	108, 381
BspACI	CCGC	4 cut(s)	290, 326, 356, 367
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	78, 168
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	108, 381
Bst4CI	ACNGT	3 cut(s)	136, 142, 208
Bst6I	CTCTTC	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	65, 155
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	35, 84, 255
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	111, 384
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	108, 381
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 67, 364
BstNSI	RCATGY	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	73, 232
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	35, 84, 255
BtsIMutI	CAGTG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	160, 211, 352
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	20, 64, 94, 154, 266
CviKI_1	RGCY	5 cut(s)	20, 64, 94, 154, 266
CviQI	GTAC	3 cut(s)	160, 211, 352
DdeI	CTNAG	2 cut(s)	65, 155
DpnI	GATC	2 cut(s)	110, 383
DpnII	GATC	2 cut(s)	108, 381
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	2 cut(s)	341, 382
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	96, 156
Eco31I	GGTCTC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	96, 156
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	283, 363
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	62, 221
FokI	GGATG	3 cut(s)	22, 71, 262
FriOI	GRGCYC	2 cut(s)	96, 156
Fsp4HI	GCNGC	2 cut(s)	62, 221
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	62, 221
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	106, 361
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	3 cut(s)	103, 184, 204
HindII	GTYRAC	3 cut(s)	103, 184, 204
HpaII	CCGG	2 cut(s)	106, 361
Hpy166II	GTNNAC	4 cut(s)	103, 184, 204, 211
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	4 cut(s)	103, 184, 204, 211
Hpy99I	CGWCG	2 cut(s)	46, 56
HpyCH4III	ACNGT	3 cut(s)	136, 142, 208
HpyCH4V	TGCA	2 cut(s)	61, 84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 67, 364
HpyF3I	CTNAG	2 cut(s)	65, 155
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	108, 381
LmnI	GCTCC	3 cut(s)	77, 151, 363
LpnPI	CCDG	6 cut(s)	18, 52, 119, 142, 163, 374
Lsp1109I	GCAGC	2 cut(s)	73, 232
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	130, 136
MalI	GATC	2 cut(s)	110, 383
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	2 cut(s)	108, 381
MboII	GAAGA	2 cut(s)	20, 382
MhlI	GDGCHC	3 cut(s)	96, 156, 392
MluCI	AATT	1 cut(s)	394
MmeI	TCCRAC	2 cut(s)	99, 129
MnlI	CCTC	3 cut(s)	223, 253, 366
MseI	TTAA	1 cut(s)	345
MspI	CCGG	2 cut(s)	106, 361
MwoI	GCNNNNNNNGC	3 cut(s)	26, 67, 364
NdeII	GATC	2 cut(s)	108, 381
NlaIII	CATG	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	292
NspI	RCATGY	1 cut(s)	190
PciI	ACATGT	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	63, 222
PscI	ACATGT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	156
RsaI	GTAC	3 cut(s)	161, 212, 353
RsaNI	GTAC	3 cut(s)	160, 211, 352
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	62, 221
Sau3AI	GATC	2 cut(s)	108, 381
SduI	GDGCHC	3 cut(s)	96, 156, 392
SetI	ASST	4 cut(s)	66, 156, 161, 264
SfaNI	GCATC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	4 cut(s)	290, 326, 356, 367
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	136, 142, 208
TaqI	TCGA	4 cut(s)	44, 51, 102, 111
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	394
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	2 cut(s)	61, 220
TspRI	CASTG	1 cut(s)	204
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.