Rmu_sc0000400.1_g000020

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000400.1
Physical Location & Seq
Forward (+)
99595 .. 100698
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000400.1_g000020.1.cds

Sequence Viewer

Length: 1104 bp
atgacacttgatcccttctcaactcaccaatattataacactaccacattcaaacatttcctctcctcgccgccggtcaacctcactcccccaccatctgtcccccacaagccgcgctgggcccgggcccgaatggactccggcccagcatccagcccacaacaacatcaccacaagctccgcaaggacaagctcatcgtcattatgggagccaccggcgccggcaagtcccgtctctccatcgacctcgccactcacttcccttgttgcttcgaaatcatcaactccgacaagatgcaagtctacaagggtctcgaaatcaccaccaacaagattcccgtccccgaccgcctcggggtccctcaccatctcctcggcgagttagacccgcacgacggcgagctctcccccgccgactttcgacaactcgcaggtctagcagtttccagcattacttgtagaggtaaagtgcctatgctcgtgggtgggtccaactctcttattcacgcgctcctcgtagaccggttcgaaccgggtgtcaataatgtgttcgaaaatggcgccgagttagtgtcatcggagctcaggtacgattgctgctttctctgggttgatgtgtcattggtggttttggccgactacatatctaagcgagtggacgaaatgcttgagtcgggaatgtttgaggagttggccgagttttgcaagacggaggaggaggacgactcggcggttcgaaccgggttgagaaaggctattggattgccggagttcagccagttttttaaaaagtacccgccgggaggaagtcagtgtcagagtgccgggccccatgatccgctgcggagaggagcagcatacaacgatgcggtgagggccatcaaggacaacacgtgtcagttggccaagaagcagattggaaaaattttacggctgaagggggcaggcgggtgggagctacggaggctagacgcgacggaggcgtttagggtggtggtgacgtcagataacgactatgtcggaaggaggtggtcggagatatgggaggaacaggtggtggaaccaagcgtgaaaattgtgaagcgattcttggagcaggagtag

Protein Analysis

367

Amino Acids

41.0

Weight (kDa)

6.65

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AatII GACGTC 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 2 cut(s) 218, 560
AccI GTMKAC 2 cut(s) 303, 519
AccII CGCG 3 cut(s) 115, 509, 974
AclWI GGATC 2 cut(s) 5, 830
AcoI YGGCCR 3 cut(s) 633, 693, 903
AcsI RAATTY 1 cut(s) 924
AcuI CTGAAG 1 cut(s) 956
AcvI CACGTG 1 cut(s) 894
AcyI GRCGYC 3 cut(s) 219, 561, 1001
AfaI GTAC 2 cut(s) 590, 794
AfiI CCNNNNNNNGG 3 cut(s) 355, 395, 803
AflIII ACRYGT 2 cut(s) 891, 893
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 1 cut(s) 52
AjuI GAANNNNNNNTTGG 1 cut(s) 1073
AluBI AGCT 5 cut(s) 178, 193, 403, 583, 958
AluI AGCT 5 cut(s) 178, 193, 403, 583, 958
Alw21I GWGCWC 2 cut(s) 405, 585
Alw26I GTCTC 2 cut(s) 239, 317
AlwI GGATC 2 cut(s) 5, 830
Ama87I CYCGRG 2 cut(s) 123, 353
AoxI GGCC 8 cut(s) 120, 126, 142, 633, 693, 827, 876, 903
ApaI GGGCCC 3 cut(s) 124, 130, 831
ApeKI GCWGC 3 cut(s) 597, 841, 854
ApoI RAATTY 1 cut(s) 924
ArsI GACNNNNNNTTYG 2 cut(s) 522, 554
AsiGI ACCGGT 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 1085
AspLEI GCGC 4 cut(s) 117, 221, 511, 563
AsuC2I CCSGG 6 cut(s) 124, 125, 534, 742, 801, 826
AsuHPI GGTGA 6 cut(s) 17, 161, 313, 356, 883, 1009
AsuII TTCGAA 4 cut(s) 273, 528, 552, 736
AvaI CYCGRG 2 cut(s) 123, 353
AvaII GGWCC 2 cut(s) 358, 489
BaeGI GKGCMC 3 cut(s) 124, 130, 831
BalI TGGCCA 1 cut(s) 905
BanI GGYRCC 2 cut(s) 218, 560
BanII GRGCYC 5 cut(s) 124, 130, 405, 585, 831
BauI CACGAG 1 cut(s) 479
BbrPI CACGTG 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 405, 585
BbvI GCAGC 3 cut(s) 584, 828, 866
BccI CCATC 4 cut(s) 103, 248, 375, 887
BceAI ACGGC 2 cut(s) 412, 947
BcnI CCSGG 6 cut(s) 124, 125, 534, 742, 801, 826
BcoDI GTCTC 2 cut(s) 239, 317
BfaI CTAG 2 cut(s) 437, 968
BfoI RGCGCY 2 cut(s) 222, 564
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 5 cut(s) 71, 113, 598, 842, 855
BlsI GCNGC 5 cut(s) 72, 114, 599, 843, 856
Bme1390I CCNGG 6 cut(s) 124, 125, 534, 742, 801, 826
Bme18I GGWCC 2 cut(s) 358, 489
BmeT110I CYCGRG 2 cut(s) 123, 353
BmrFI CCNGG 6 cut(s) 124, 125, 534, 742, 801, 826
BmsI GCATC 3 cut(s) 158, 285, 856
BplI GAGNNNNNCTC 2 cut(s) 710, 742
Bpu10I CCTNAGC 1 cut(s) 584
Bpu14I TTCGAA 4 cut(s) 273, 528, 552, 736
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 6 cut(s) 124, 125, 534, 742, 801, 826
BsaAI YACGTR 1 cut(s) 894
BsaHI GRCGYC 3 cut(s) 219, 561, 1001
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 123, 352, 373
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 3 cut(s) 572, 602, 1085
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 395, 803
Bse118I RCCGGY 4 cut(s) 73, 215, 221, 522
Bse1I ACTGG 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 123, 352, 373
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 3 cut(s) 355, 395, 803
BseMII CTCAG 1 cut(s) 598
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 7 cut(s) 55, 362, 503, 701, 728, 731, 864
BseSI GKGCMC 3 cut(s) 124, 130, 831
BseXI GCAGC 3 cut(s) 584, 828, 866
BseYI CCCAGC 2 cut(s) 117, 145
Bsh1236I CGCG 3 cut(s) 115, 509, 974
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 8 cut(s) 122, 128, 144, 635, 695, 829, 878, 905
BshNI GGYRCC 2 cut(s) 218, 560
BshTI ACCGGT 1 cut(s) 522
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 405, 585
BsiHKCI CYCGRG 2 cut(s) 123, 353
BslFI GGGAC 4 cut(s) 86, 214, 326, 344
BslI CCNNNNNNNGG 3 cut(s) 355, 395, 803
BsmAI GTCTC 2 cut(s) 239, 317
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 4 cut(s) 86, 214, 326, 344
BsnI GGCC 8 cut(s) 122, 128, 144, 635, 695, 829, 878, 905
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 2 cut(s) 123, 353
Bsp119I TTCGAA 4 cut(s) 273, 528, 552, 736
Bsp120I GGGCCC 3 cut(s) 120, 126, 827
Bsp1286I GDGCHC 5 cut(s) 124, 130, 405, 585, 831
Bsp143I GATC 2 cut(s) 10, 835
BspANI GGCC 8 cut(s) 122, 128, 144, 635, 695, 829, 878, 905
BspCNI CTCAG 1 cut(s) 597
BspFNI CGCG 3 cut(s) 115, 509, 974
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 5, 830
BspT104I TTCGAA 4 cut(s) 273, 528, 552, 736
BspT107I GGYRCC 2 cut(s) 218, 560
BspTNI GGTCTC 1 cut(s) 317
BsrFI RCCGGY 4 cut(s) 73, 215, 221, 522
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 4 cut(s) 73, 215, 221, 522
BssECI CCNNGG 3 cut(s) 123, 352, 373
BssMI GATC 2 cut(s) 10, 835
BssNI GRCGYC 3 cut(s) 219, 561, 1001
BssSI CACGAG 1 cut(s) 479
Bst2BI CACGAG 1 cut(s) 479
BstACI GRCGYC 3 cut(s) 219, 561, 1001
BstBAI YACGTR 1 cut(s) 894
BstBI TTCGAA 4 cut(s) 273, 528, 552, 736
BstC8I GCNNGC 3 cut(s) 223, 401, 946
BstDEI CTNAG 2 cut(s) 584, 648
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 3 cut(s) 115, 509, 974
BstH2I RGCGCY 2 cut(s) 222, 564
BstHHI GCGC 4 cut(s) 117, 221, 511, 563
BstKTI GATC 2 cut(s) 13, 838
BstMAI GTCTC 2 cut(s) 239, 317
BstMBI GATC 2 cut(s) 10, 835
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 5 cut(s) 218, 437, 875, 964, 980
BstSCI CCNGG 6 cut(s) 122, 123, 532, 740, 799, 824
BstSLI GKGCMC 3 cut(s) 124, 130, 831
BstUI CGCG 3 cut(s) 115, 509, 974
BstV1I GCAGC 3 cut(s) 584, 828, 866
BsuRI GGCC 8 cut(s) 122, 128, 144, 635, 695, 829, 878, 905
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 818
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 223, 401, 946
CfoI GCGC 4 cut(s) 117, 221, 511, 563
Cfr10I RCCGGY 4 cut(s) 73, 215, 221, 522
Cfr9I CCCGGG 1 cut(s) 123
CseI GACGC 1 cut(s) 980
Csp6I GTAC 2 cut(s) 589, 793
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 1 cut(s) 833
CviQI GTAC 2 cut(s) 589, 793
DdeI CTNAG 2 cut(s) 584, 648
DinI GGCGCC 2 cut(s) 220, 562
DpnI GATC 2 cut(s) 12, 837
DpnII GATC 2 cut(s) 10, 835
DraI TTTAAA 1 cut(s) 787
EaeI YGGCCR 3 cut(s) 633, 693, 903
Ecl136II GAGCTC 2 cut(s) 403, 583
Eco24I GRGCYC 5 cut(s) 124, 130, 405, 585, 831
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 358, 489
Eco53kI GAGCTC 2 cut(s) 403, 583
Eco57I CTGAAG 1 cut(s) 956
Eco72I CACGTG 1 cut(s) 894
Eco88I CYCGRG 2 cut(s) 123, 353
EcoICRI GAGCTC 2 cut(s) 403, 583
EcoO109I RGGNCCY 2 cut(s) 358, 828
EcoT38I GRGCYC 5 cut(s) 124, 130, 405, 585, 831
EgeI GGCGCC 2 cut(s) 220, 562
EheI GGCGCC 2 cut(s) 220, 562
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 1 cut(s) 836
FaiI YATR 8 cut(s) 36, 206, 476, 644, 834, 859, 1017, 1042
FalI AAGNNNNNCTT 1 cut(s) 1073
FaqI GGGAC 4 cut(s) 86, 214, 326, 344
FatI CATG 1 cut(s) 832
FauI CCCGC 4 cut(s) 396, 418, 804, 941
FblI GTMKAC 2 cut(s) 303, 519
Fnu4HI GCNGC 5 cut(s) 71, 113, 598, 842, 855
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 5 cut(s) 124, 130, 405, 585, 831
Fsp4HI GCNGC 5 cut(s) 71, 113, 598, 842, 855
FspBI CTAG 2 cut(s) 437, 968
GlaI GCGC 4 cut(s) 116, 220, 510, 562
GluI GCNGC 5 cut(s) 71, 113, 598, 842, 855
GsaI CCCAGC 2 cut(s) 121, 149
HaeII RGCGCY 2 cut(s) 222, 564
HaeIII GGCC 8 cut(s) 122, 128, 144, 635, 695, 829, 878, 905
HgaI GACGC 1 cut(s) 980
HhaI GCGC 4 cut(s) 117, 221, 511, 563
Hin1I GRCGYC 3 cut(s) 219, 561, 1001
Hin1II CATG 1 cut(s) 836
Hin6I GCGC 4 cut(s) 115, 219, 509, 561
HinP1I GCGC 4 cut(s) 115, 219, 509, 561
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 5 cut(s) 137, 334, 671, 725, 1086
HphI GGTGA 6 cut(s) 17, 161, 313, 356, 883, 1009
Hpy166II GTNNAC 4 cut(s) 79, 304, 520, 658
Hpy188I TCNGA 6 cut(s) 289, 580, 819, 1006, 1022, 1036
Hpy188III TCNNGA 2 cut(s) 314, 675
Hpy8I GTNNAC 4 cut(s) 79, 304, 520, 658
Hpy99I CGWCG 2 cut(s) 398, 979
HpyAV CCTTC 3 cut(s) 25, 931, 1017
HpyCH4IV ACGT 2 cut(s) 893, 1001
HpyCH4V TGCA 2 cut(s) 298, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 437, 875, 964, 980
HpyF3I CTNAG 2 cut(s) 584, 648
HpySE526I ACGT 2 cut(s) 893, 1001
Hsp92I GRCGYC 3 cut(s) 219, 561, 1001
Hsp92II CATG 1 cut(s) 836
HspAI GCGC 4 cut(s) 115, 219, 509, 561
KasI GGCGCC 2 cut(s) 218, 560
KflI GGGWCCC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 10, 835
LmnI GCTCC 7 cut(s) 183, 209, 516, 580, 851, 955, 1093
Lsp1109I GCAGC 3 cut(s) 584, 828, 866
LweI GCATC 3 cut(s) 158, 285, 856
MaeI CTAG 2 cut(s) 437, 968
MaeII ACGT 2 cut(s) 893, 1001
MaeIII GTNAC 1 cut(s) 997
MalI GATC 2 cut(s) 12, 837
MboI GATC 2 cut(s) 10, 835
MhlI GDGCHC 5 cut(s) 124, 130, 405, 585, 831
MlsI TGGCCA 1 cut(s) 905
MluCI AATT 2 cut(s) 924, 1074
MluNI TGGCCA 1 cut(s) 905
Mly113I GGCGCC 2 cut(s) 219, 561
MlyI GAGTC 3 cut(s) 131, 680, 719
MmeI TCCRAC 4 cut(s) 312, 516, 1000, 1014
Mox20I TGGCCA 1 cut(s) 905
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 1 cut(s) 905
MseI TTAA 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 905
MspA1I CMGCKG 1 cut(s) 841
MspR9I CCNGG 6 cut(s) 124, 125, 534, 742, 801, 826
MvnI CGCG 3 cut(s) 115, 509, 974
MwoI GCNNNNNNNGC 5 cut(s) 218, 437, 875, 964, 980
NaeI GCCGGC 1 cut(s) 223
NarI GGCGCC 2 cut(s) 219, 561
NciI CCSGG 6 cut(s) 124, 125, 534, 742, 801, 826
NdeII GATC 2 cut(s) 10, 835
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 836
NmeAIII GCCGAG 4 cut(s) 354, 589, 707, 721
NmuCI GTSAC 1 cut(s) 997
NspV TTCGAA 4 cut(s) 273, 528, 552, 736
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 2 cut(s) 334, 1086
PflFI GACNNNGTC 1 cut(s) 1016
PinAI ACCGGT 1 cut(s) 522
PkrI GCNGC 5 cut(s) 72, 114, 599, 843, 856
PleI GAGTC 3 cut(s) 131, 679, 719
PluTI GGCGCC 2 cut(s) 222, 564
PmaCI CACGTG 1 cut(s) 894
PmlI CACGTG 1 cut(s) 894
PpsI GAGTC 3 cut(s) 131, 679, 719
Ppu21I YACGTR 1 cut(s) 894
PpuMI RGGWCCY 1 cut(s) 358
PsiI TTATAA 1 cut(s) 36
Psp124BI GAGCTC 2 cut(s) 405, 585
Psp5II RGGWCCY 1 cut(s) 358
PspCI CACGTG 1 cut(s) 894
PspFI CCCAGC 2 cut(s) 117, 145
PspOMI GGGCCC 3 cut(s) 120, 126, 827
PspPPI RGGWCCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 1016
RsaI GTAC 2 cut(s) 590, 794
RsaNI GTAC 2 cut(s) 589, 793
SacI GAGCTC 2 cut(s) 405, 585
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 5 cut(s) 71, 113, 598, 842, 855
Sau3AI GATC 2 cut(s) 10, 835
SchI GAGTC 3 cut(s) 131, 680, 719
ScrFI CCNGG 6 cut(s) 124, 125, 534, 742, 801, 826
SduI GDGCHC 5 cut(s) 124, 130, 405, 585, 831
SfaNI GCATC 3 cut(s) 158, 285, 856
SfoI GGCGCC 2 cut(s) 220, 562
SfuI TTCGAA 4 cut(s) 273, 528, 552, 736
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 2 cut(s) 358, 489
SmaI CCCGGG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SrfI GCCCGGGC 1 cut(s) 125
Sse9I AATT 2 cut(s) 924, 1074
SspDI GGCGCC 2 cut(s) 218, 560
SspI AATATT 1 cut(s) 32
SspMI CTAG 2 cut(s) 437, 968
SstI GAGCTC 2 cut(s) 405, 585
StyD4I CCNGG 6 cut(s) 122, 123, 532, 740, 799, 824
TaiI ACGT 2 cut(s) 896, 1004
TaqI TCGA 7 cut(s) 243, 273, 315, 421, 528, 552, 736
TasI AATT 2 cut(s) 924, 1074
TauI GCSGC 2 cut(s) 73, 115
TfiI GAWTC 2 cut(s) 334, 1086
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 1 cut(s) 818
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 3 cut(s) 597, 841, 854
Tsp45I GTSAC 1 cut(s) 997
TspGWI ACGGA 3 cut(s) 725, 976, 992
TspMI CCCGGG 1 cut(s) 123
TspRI CASTG 1 cut(s) 818
Tth111I GACNNNGTC 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 358, 489
XapI RAATTY 1 cut(s) 924
XmaI CCCGGG 1 cut(s) 123
XmiI GTMKAC 2 cut(s) 303, 519
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 2 cut(s) 437, 968
ZraI GACGTC 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.