Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0003924

Physical Location & Seq

Genomic Coordinates Reverse (-)

5207 .. 5917

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgctatcgggccaagttgacttggttgatccggtggtcaaccaccaagatggcgacatcacccccgtcgagtttcgacgagttgcagctcaggcggtttctagcattgtttccctgagcaaagtatcggtgcttgtcggcggctccaactcgtgcatccaggggctcgtagtcgaccggctcgagtcagattgtgatgtggcaactgtaacggtctcgtcggagctcaggtacgagtactgctttctctgggccaatatgtcgttgtcagtgttgacggtgtacttatcgcagcgagtggaggaaatgttcaacttggggatgtttcttgaggtggccgagttctacgaggaaaactctgcgggtcaaaccaaactaagaaaggcaatcatagtggcggagttcggtcagtattttaaagagtaccagcctccggtggcggaagaggacgatgatcccatgcccaaagcattttctgggtgcccaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0034264 GO:0034265 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

4.29

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68460
fragaria_vesca	FvH4_3g05590 FvH4_3g17710 FvH4_4g27230
malus_domestica	MD13G1040600.v1.1 MD16G1041700.v1.1
prunus_persica	Prupe.1G312400_v2.0.a1
pyrus_communis	pycom13g03490 pycom16g03610
rosa_chinensis	RchiOBHm_Chr4g0435021 RchiOBHm_Chr5g0029421
rosa_laevigata	RLG00000006628 RLG00000033164
rosa_multiflora	Rmu_sc0000400.1_g000020 Rmu_sc0001211.1_g000003 Rmu_sc0004373.1_g000012 Rmu_sc0007525.1_g000003 Rmu_sc0007525.1_g000009 Rmu_ssc0000309.1_g000055
rosa_roxburghii	Rroxscaffold_5G00362790 Rroxscaffold_5G00376210
rosa_rugosa	Rorug04G0281800 Rorug05G0114100
rosa_samantha	Rh2CG411300 Rh4AG337200 Rh4BG345100 Rh4CG359900 Rh4DG339600 Rh5AG206200 Rh5BG204700 Rh5CG226700 Rh5DG208300
rosa_wichuraiana	Rw4G029400 Rw5G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	5 cut(s)	95, 141, 362, 398, 440
AclWI	GGATC	2 cut(s)	23, 449
AcoI	YGGCCR	1 cut(s)	336
AfaI	GTAC	4 cut(s)	233, 239, 284, 425
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	2 cut(s)	89, 226
AluI	AGCT	2 cut(s)	89, 226
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	2 cut(s)	23, 449
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	10, 252, 336
ApeKI	GCWGC	2 cut(s)	86, 292
AspS9I	GGNCC	2 cut(s)	10, 252
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	168, 228
BauI	CACGAG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	98, 304
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	3 cut(s)	87, 142, 293
BlsI	GCNGC	3 cut(s)	88, 143, 294
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	10, 252
BmiI	GGNNCC	2 cut(s)	145, 482
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	3 cut(s)	90, 116, 227
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	31, 433
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	156, 327
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	104, 107, 241
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	98, 304
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	12, 254, 338
BshNI	GGYRCC	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	32, 178, 434
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	12, 254, 338
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	168, 228, 485
Bsp143I	GATC	2 cut(s)	28, 454
BspACI	CCGC	5 cut(s)	95, 141, 362, 398, 440
BspANI	GGCC	3 cut(s)	12, 254, 338
BspCNI	CTCAG	3 cut(s)	103, 108, 240
BspLI	GGNNCC	2 cut(s)	145, 482
BspPI	GGATC	2 cut(s)	23, 449
BspT107I	GGYRCC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	28, 454
BssSI	CACGAG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	208, 214, 280
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	90, 116, 227, 377
BstF5I	GGATG	2 cut(s)	156, 327
BstKTI	GATC	2 cut(s)	31, 457
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	28, 454
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	98, 304
BstXI	CCANNNNNNTGG	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	12, 254, 338
BtsCI	GGATG	2 cut(s)	156, 327
BtsIMutI	CAGTG	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	10, 252
Csp6I	GTAC	4 cut(s)	232, 238, 283, 424
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	9 cut(s)	12, 89, 144, 166, 181, 226, 254, 338, 430
CviKI_1	RGCY	9 cut(s)	12, 89, 144, 166, 181, 226, 254, 338, 430
CviQI	GTAC	4 cut(s)	232, 238, 283, 424
DdeI	CTNAG	4 cut(s)	90, 116, 227, 377
DpnI	GATC	2 cut(s)	30, 456
DpnII	GATC	2 cut(s)	28, 454
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	413, 455
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	168, 228
Eco31I	GGTCTC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	168, 228
FaeI	CATG	1 cut(s)	463
FaiI	YATR	3 cut(s)	260, 392, 461
FatI	CATG	1 cut(s)	459
FauI	CCCGC	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	87, 142, 293
FokI	GGATG	2 cut(s)	143, 334
FriOI	GRGCYC	2 cut(s)	168, 228
Fsp4HI	GCNGC	3 cut(s)	87, 142, 293
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	3 cut(s)	87, 142, 293
HaeIII	GGCC	3 cut(s)	12, 254, 338
HapII	CCGG	3 cut(s)	32, 178, 434
Hin1II	CATG	1 cut(s)	463
HincII	GTYRAC	4 cut(s)	19, 40, 175, 276
HindII	GTYRAC	4 cut(s)	19, 40, 175, 276
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	3 cut(s)	32, 178, 434
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	5 cut(s)	19, 40, 175, 276, 283
Hpy188I	TCNGA	2 cut(s)	190, 223
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	5 cut(s)	19, 40, 175, 276, 283
Hpy99I	CGWCG	3 cut(s)	71, 81, 223
HpyCH4III	ACNGT	3 cut(s)	208, 214, 280
HpyCH4V	TGCA	2 cut(s)	86, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	4 cut(s)	90, 116, 227, 377
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	28, 454
LmnI	GCTCC	2 cut(s)	149, 223
Lsp1109I	GCAGC	2 cut(s)	98, 304
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	30, 456
MboI	GATC	2 cut(s)	28, 454
MboII	GAAGA	1 cut(s)	455
MhlI	GDGCHC	3 cut(s)	168, 228, 485
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	171, 201
MnlI	CCTC	5 cut(s)	295, 325, 343, 439, 441
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	3 cut(s)	32, 178, 434
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	28, 454
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	2 cut(s)	145, 482
NmeAIII	GCCGAG	1 cut(s)	364
PaeR7I	CTCGAG	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	88, 143, 294
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	145, 482
PspPI	GGNCC	2 cut(s)	10, 252
PspXI	VCTCGAGB	1 cut(s)	182
RsaI	GTAC	4 cut(s)	233, 239, 284, 425
RsaNI	GTAC	4 cut(s)	232, 238, 283, 424
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	3 cut(s)	87, 142, 293
Sau3AI	GATC	2 cut(s)	28, 454
Sau96I	GGNCC	2 cut(s)	10, 252
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	3 cut(s)	168, 228, 485
SetI	ASST	4 cut(s)	91, 228, 233, 336
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	182, 329
SmoI	CTYRAG	2 cut(s)	182, 329
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	5 cut(s)	95, 141, 362, 398, 440
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	208, 214, 280
TaqI	TCGA	4 cut(s)	69, 76, 174, 183
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	487
TatI	WGTACW	2 cut(s)	237, 282
TauI	GCSGC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	86, 292
TspRI	CASTG	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.