RLG00000033164

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
23962964 .. 23964170
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033164

Sequence Viewer

Length: 1074 bp
ATGGACTTCTCCGGCCCACAACGTAAAGACAAGCTCCTCGTCATCATGGGCGCCACCGGCGCCGGCAAGTCGCGGCTATCCCTCGACCTCGCCTCCCTCTTCCCTCCGGCCACCTTCGAAGTCATCAACGCCGACAAAATGCAGGTCTACAAGGGGCTCGACATCACCACCAACAAGCTCTCCGCTCTTGAACGGGGCGTCGTTCCGCACCATCTTCTCGGCGAGTTCGACCCCCGCGACCGCGATGTCACCCCCGCCGAGTTTCGCCGACTCGCGGCTCAGGCGGTGTCTAGCGTCGTCTCCCGGAGGAAAGTACCGGTGCTCGTCGGCGGGTCCAACTCGTTCATCCACGCGCTCGTAGTCGACCGGTTCGAACCAGACTGTGATGTATTTAACGGCGAGTCTGTAACGGTAGCGGTCTCGTCGGAGCTCAGGTACGACTGCTGCTTTCTCTGGGTCGACGTGTCGCTGCCGGTGTTGACGGCGTACTTGTTGCAGCGAGTGGAGGAAATGCTCGACTCGGGGATGTTCCACGAGCTGGCCGAGTTCTACGGGGAAAACTCGGAGGGTCGAACCGGTCTGAGGAAGGCGATCGGAGTGGCGGAGTTCAGCCGGTACTTTAAGGAGTACCCGCCGCCGGTGGCGGCGGCGGAGGATGAAGATCCGGTGCGGCGGGGAGCATATGATGAGGCGGTGGGAGAGATTAAAAAGAACACGTGTCGGCTGGCGAAGAGGCAGATGGGAAAGATTGCGAGGCTGAGGAAGGCGGGGTGGGACCTACGGAGGCTGGACGCGACGGAGGCGTTTAGGGCGGTGGTGACGTCAGATGACGAGGGAGAGGGGAAGAGGTGGTCGGAGATTTGGGAGAGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAGGCATTTCTTAGTGGAGGAGGAAAAATTGGGGTTGGAAAATTTTGGGAGAAGGGGTCGAGGTTTGTCAACGAAGGAAGAGCAAGGACAGGTCAGGATGAAATTGGGGAGGGGGGAGATTTCAAATTTTGGGTTTGGGAGGGAAATTCCCCAAGATACTCAAGAGAAGATGTAA

Protein Analysis

358

Amino Acids

40.09

Weight (kDa)

5.93

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 48 - 122 2.7e-17 IPP transferase
IPPT PF01715 143 - 247 5.2e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 2 cut(s) 50, 59
AccB7I CCANNNNNTGG 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 185
AccI GTMKAC 3 cut(s) 147, 363, 459
AccII CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 2 cut(s) 108, 540
AcsI RAATTY 3 cut(s) 940, 1024, 1044
AcvI CACGTG 1 cut(s) 717
AcyI GRCGYC 4 cut(s) 51, 60, 198, 821
AfaI GTAC 5 cut(s) 315, 437, 488, 617, 629
AfiI CCNNNNNNNGG 4 cut(s) 274, 538, 582, 637
AflIII ACRYGT 3 cut(s) 462, 714, 716
AgeI ACCGGT 3 cut(s) 316, 366, 575
AgsI TTSAA 2 cut(s) 191, 1023
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 4 cut(s) 34, 178, 430, 538
AluI AGCT 4 cut(s) 34, 178, 430, 538
Alw21I GWGCWC 2 cut(s) 324, 432
Alw26I GTCTC 2 cut(s) 304, 424
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 520
AoxI GGCC 3 cut(s) 13, 108, 540
ApeKI GCWGC 3 cut(s) 444, 469, 496
ApoI RAATTY 3 cut(s) 940, 1024, 1044
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AsiGI ACCGGT 3 cut(s) 316, 366, 575
AspLEI GCGC 3 cut(s) 53, 62, 355
AspS9I GGNCC 3 cut(s) 14, 333, 775
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 157, 241, 829
AsuII TTCGAA 2 cut(s) 117, 372
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 2 cut(s) 333, 775
BanI GGYRCC 2 cut(s) 50, 59
BanII GRGCYC 2 cut(s) 159, 432
BauI CACGAG 1 cut(s) 533
BbrPI CACGTG 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 324, 432
BbvCI CCTCAGC 1 cut(s) 758
BbvI GCAGC 3 cut(s) 431, 456, 508
BccI CCATC 2 cut(s) 219, 733
BceAI ACGGC 2 cut(s) 412, 498
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 304, 424
BfaI CTAG 1 cut(s) 291
BfoI RGCGCY 2 cut(s) 54, 63
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 9 cut(s) 74, 276, 445, 470, 497, 635, 645, 648, 671
BlsI GCNGC 9 cut(s) 75, 277, 446, 471, 498, 636, 646, 649, 672
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 2 cut(s) 333, 775
BmeT110I CYCGRG 1 cut(s) 520
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 3 cut(s) 14, 333, 775
BmiI GGNNCC 4 cut(s) 52, 61, 334, 776
BmrFI CCNGG 1 cut(s) 304
Bpu10I CCTNAGC 3 cut(s) 279, 431, 758
Bpu14I TTCGAA 2 cut(s) 117, 372
BpuEI CTTGAG 1 cut(s) 1044
BpuMI CCSGG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 717
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 4 cut(s) 51, 60, 198, 821
BsaI GGTCTC 1 cut(s) 424
BsaWI WCCGGW 4 cut(s) 316, 366, 575, 664
BsaXI ACNNNNNCTCC 8 cut(s) 77, 107, 164, 194, 419, 449, 940, 970
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 538, 582, 637
Bse118I RCCGGY 8 cut(s) 56, 62, 316, 366, 472, 575, 612, 637
Bse8I GATNNNNATC 1 cut(s) 660
BseGI GGATG 4 cut(s) 345, 531, 661, 1002
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 4 cut(s) 274, 538, 582, 637
BseMII CTCAG 4 cut(s) 293, 445, 572, 749
BseRI GAGGAG 2 cut(s) 26, 932
BseXI GCAGC 3 cut(s) 431, 456, 508
Bsh1236I CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
Bsh1285I CGRYCG 3 cut(s) 241, 367, 594
BshFI GGCC 3 cut(s) 15, 110, 542
BshNI GGYRCC 2 cut(s) 50, 59
BshTI ACCGGT 3 cut(s) 316, 366, 575
BsiEI CGRYCG 3 cut(s) 241, 367, 594
BsiHKAI GWGCWC 2 cut(s) 324, 432
BsiHKCI CYCGRG 1 cut(s) 520
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 4 cut(s) 274, 538, 582, 637
BsmAI GTCTC 2 cut(s) 304, 424
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 3 cut(s) 15, 110, 542
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 520
Bsp119I TTCGAA 2 cut(s) 117, 372
Bsp1286I GDGCHC 3 cut(s) 159, 324, 432
Bsp143I GATC 2 cut(s) 591, 661
BspANI GGCC 3 cut(s) 15, 110, 542
BspCNI CTCAG 4 cut(s) 292, 444, 573, 750
BspFNI CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
BspLI GGNNCC 4 cut(s) 52, 61, 334, 776
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 972
BspT104I TTCGAA 2 cut(s) 117, 372
BspT107I GGYRCC 2 cut(s) 50, 59
BspTNI GGTCTC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 185
BsrFI RCCGGY 8 cut(s) 56, 62, 316, 366, 472, 575, 612, 637
BssAI RCCGGY 8 cut(s) 56, 62, 316, 366, 472, 575, 612, 637
BssMI GATC 2 cut(s) 591, 661
BssNI GRCGYC 4 cut(s) 51, 60, 198, 821
BssSI CACGAG 1 cut(s) 533
Bst2BI CACGAG 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 383, 412
Bst6I CTCTTC 4 cut(s) 104, 725, 839, 972
BstACI GRCGYC 4 cut(s) 51, 60, 198, 821
BstBAI YACGTR 1 cut(s) 717
BstBI TTCGAA 2 cut(s) 117, 372
BstC8I GCNNGC 3 cut(s) 64, 540, 726
BstDEI CTNAG 5 cut(s) 279, 431, 581, 758, 910
BstF5I GGATG 4 cut(s) 345, 531, 661, 1002
BstFNI CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
BstH2I RGCGCY 2 cut(s) 54, 63
BstHHI GCGC 3 cut(s) 53, 62, 355
BstKTI GATC 2 cut(s) 594, 664
BstMAI GTCTC 2 cut(s) 304, 424
BstMBI GATC 2 cut(s) 591, 661
BstMCI CGRYCG 3 cut(s) 241, 367, 594
BstMWI GCNNNNNNNGC 5 cut(s) 57, 59, 281, 800, 809
BstSCI CCNGG 1 cut(s) 302
BstUI CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
BstV1I GCAGC 3 cut(s) 431, 456, 508
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 3 cut(s) 15, 110, 542
BtgZI GCGATG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 4 cut(s) 345, 531, 661, 1002
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 64, 540, 726
CfoI GCGC 3 cut(s) 53, 62, 355
Cfr10I RCCGGY 8 cut(s) 56, 62, 316, 366, 472, 575, 612, 637
Cfr13I GGNCC 3 cut(s) 14, 333, 775
CseI GACGC 3 cut(s) 187, 283, 800
Csp6I GTAC 5 cut(s) 314, 436, 487, 616, 628
CspAI ACCGGT 3 cut(s) 316, 366, 575
CviAII CATG 1 cut(s) 46
CviQI GTAC 5 cut(s) 314, 436, 487, 616, 628
DdeI CTNAG 5 cut(s) 279, 431, 581, 758, 910
DinI GGCGCC 2 cut(s) 52, 61
DpnI GATC 2 cut(s) 593, 663
DpnII GATC 2 cut(s) 591, 661
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 108, 540
Eam1104I CTCTTC 4 cut(s) 104, 725, 839, 972
EarI CTCTTC 4 cut(s) 104, 725, 839, 972
EciI GGCGGA 2 cut(s) 617, 665
Ecl136II GAGCTC 1 cut(s) 430
Eco24I GRGCYC 2 cut(s) 159, 432
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 333, 775
Eco53kI GAGCTC 1 cut(s) 430
Eco72I CACGTG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 159, 432
EgeI GGCGCC 2 cut(s) 52, 61
EheI GGCGCC 2 cut(s) 52, 61
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 682, 684
FaqI GGGAC 1 cut(s) 788
FatI CATG 1 cut(s) 45
FauI CCCGC 6 cut(s) 242, 262, 323, 639, 666, 760
FauNDI CATATG 1 cut(s) 682
FblI GTMKAC 3 cut(s) 147, 363, 459
Fnu4HI GCNGC 9 cut(s) 74, 276, 445, 470, 497, 635, 645, 648, 671
FokI GGATG 4 cut(s) 332, 538, 668, 1009
FriOI GRGCYC 2 cut(s) 159, 432
Fsp4HI GCNGC 9 cut(s) 74, 276, 445, 470, 497, 635, 645, 648, 671
FspBI CTAG 1 cut(s) 291
GlaI GCGC 3 cut(s) 52, 61, 354
GluI GCNGC 9 cut(s) 74, 276, 445, 470, 497, 635, 645, 648, 671
HaeII RGCGCY 2 cut(s) 54, 63
HaeIII GGCC 3 cut(s) 15, 110, 542
HgaI GACGC 3 cut(s) 187, 283, 800
HhaI GCGC 3 cut(s) 53, 62, 355
Hin1I GRCGYC 4 cut(s) 51, 60, 198, 821
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 3 cut(s) 51, 60, 353
HinP1I GCGC 3 cut(s) 51, 60, 353
HincII GTYRAC 4 cut(s) 364, 460, 480, 969
HindII GTYRAC 4 cut(s) 364, 460, 480, 969
HinfI GANTC 3 cut(s) 270, 401, 518
HphI GGTGA 3 cut(s) 157, 241, 829
Hpy166II GTNNAC 5 cut(s) 148, 364, 460, 480, 969
Hpy188I TCNGA 6 cut(s) 427, 565, 582, 596, 826, 856
Hpy188III TCNNGA 3 cut(s) 188, 994, 1061
Hpy8I GTNNAC 5 cut(s) 148, 364, 460, 480, 969
Hpy99I CGWCG 6 cut(s) 203, 299, 329, 427, 464, 799
HpyAV CCTTC 5 cut(s) 124, 580, 757, 945, 967
HpyCH4III ACNGT 2 cut(s) 383, 412
HpyCH4IV ACGT 4 cut(s) 22, 462, 716, 821
HpyCH4V TGCA 2 cut(s) 142, 496
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 59, 281, 800, 809
HpyF3I CTNAG 5 cut(s) 279, 431, 581, 758, 910
HpySE526I ACGT 4 cut(s) 22, 462, 716, 821
Hsp92I GRCGYC 4 cut(s) 51, 60, 198, 821
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 3 cut(s) 51, 60, 353
KasI GGCGCC 2 cut(s) 50, 59
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 591, 661
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 3 cut(s) 39, 427, 677
Lsp1109I GCAGC 3 cut(s) 431, 456, 508
MaeI CTAG 1 cut(s) 291
MaeII ACGT 4 cut(s) 22, 462, 716, 821
MaeIII GTNAC 3 cut(s) 247, 406, 817
MalI GATC 2 cut(s) 593, 663
MbiI CCGCTC 1 cut(s) 185
MboI GATC 2 cut(s) 591, 661
MboII GAAGA 7 cut(s) 91, 206, 671, 742, 856, 904, 989
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 3 cut(s) 159, 324, 432
MluCI AATT 5 cut(s) 926, 940, 1001, 1024, 1044
Mly113I GGCGCC 2 cut(s) 51, 60
MlyI GAGTC 3 cut(s) 264, 410, 512
MmeI TCCRAC 4 cut(s) 360, 405, 834, 915
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 3 cut(s) 393, 621, 705
MspR9I CCNGG 1 cut(s) 304
MvnI CGCG 6 cut(s) 73, 237, 243, 275, 353, 794
MwoI GCNNNNNNNGC 5 cut(s) 57, 59, 281, 800, 809
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 2 cut(s) 51, 60
NciI CCSGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 682
NdeII GATC 2 cut(s) 591, 661
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 52, 61, 334, 776
NmeAIII GCCGAG 3 cut(s) 198, 283, 568
NmuCI GTSAC 2 cut(s) 247, 817
NspV TTCGAA 2 cut(s) 117, 372
PciSI GCTCTTC 1 cut(s) 972
PcsI WCGNNNNNNNCGW 4 cut(s) 225, 234, 369, 540
PdiI GCCGGC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 302
PinAI ACCGGT 3 cut(s) 316, 366, 575
PkrI GCNGC 9 cut(s) 75, 277, 446, 471, 498, 636, 646, 649, 672
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 3 cut(s) 264, 409, 512
PluTI GGCGCC 2 cut(s) 54, 63
PmaCI CACGTG 1 cut(s) 717
PmlI CACGTG 1 cut(s) 717
PpsI GAGTC 3 cut(s) 264, 409, 512
Ppu21I YACGTR 1 cut(s) 717
PpuMI RGGWCCY 1 cut(s) 775
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 775
PspCI CACGTG 1 cut(s) 717
PspN4I GGNNCC 4 cut(s) 52, 61, 334, 776
PspPI GGNCC 3 cut(s) 14, 333, 775
PspPPI RGGWCCY 1 cut(s) 775
PsuI RGATCY 1 cut(s) 661
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 5 cut(s) 315, 437, 488, 617, 629
RsaNI GTAC 5 cut(s) 314, 436, 487, 616, 628
SacI GAGCTC 1 cut(s) 432
SalI GTCGAC 2 cut(s) 362, 458
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 3 cut(s) 393, 621, 705
SatI GCNGC 9 cut(s) 74, 276, 445, 470, 497, 635, 645, 648, 671
Sau3AI GATC 2 cut(s) 591, 661
Sau96I GGNCC 3 cut(s) 14, 333, 775
SchI GAGTC 3 cut(s) 264, 410, 512
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 3 cut(s) 159, 324, 432
SfoI GGCGCC 2 cut(s) 52, 61
SfuI TTCGAA 2 cut(s) 117, 372
SgrAI CRCCGGYG 2 cut(s) 56, 637
SinI GGWCC 2 cut(s) 333, 775
SmlI CTYRAG 1 cut(s) 1059
SmoI CTYRAG 1 cut(s) 1059
Sse9I AATT 5 cut(s) 926, 940, 1001, 1024, 1044
SspDI GGCGCC 2 cut(s) 50, 59
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 383, 412
TaiI ACGT 4 cut(s) 25, 465, 719, 824
TasI AATT 5 cut(s) 926, 940, 1001, 1024, 1044
TauI GCSGC 6 cut(s) 76, 278, 637, 647, 650, 673
Tru1I TTAA 3 cut(s) 393, 621, 705
Tru9I TTAA 3 cut(s) 393, 621, 705
TseFI GTSAC 2 cut(s) 247, 817
TseI GCWGC 3 cut(s) 444, 469, 496
Tsp45I GTSAC 2 cut(s) 247, 817
TspDTI ATGAA 3 cut(s) 334, 672, 1013
TspGWI ACGGA 2 cut(s) 796, 812
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 2 cut(s) 333, 775
XapI RAATTY 3 cut(s) 940, 1024, 1044
XmiI GTMKAC 3 cut(s) 147, 363, 459
XspI CTAG 1 cut(s) 291
ZraI GACGTC 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.