Rh5CG226700

Adenylate isopentenyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
23117347 .. 23118946
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG226700.1

Sequence Viewer

Length: 939 bp
ATGGACTTCTCCGGCCCAAAACCAAACGGCCCACAACGTAAAGACAAGCTCCTCGTCATCATGGGCGCCACCGGCGCCGGCAAGTCGCGGCTCTCCCTCGACCTCGCCGCCCGCTTCCCTCCGGCCACCTTCGAAGTCATCAACGCCGACAAAATGCAGGTCTACAAGGGACTCGACGTCACCACCAACAAGCTCTCCGCTCCCGAACTGCGCGTCGTTCCGCACCATCTTCTCGGTGAGTTCGACTCCCGCGACGGCGACGTCACCCCCGCCGAGTTTCGCCGACTCGCGGCTCAGGCGGTGTCTAGCGTCGTCTCCCGGAGGAAACTACCGGTGCTCGTCGGCGGGTCCAACTCGTTCATCCACGCTCTCGTAGTCGACCGGTTCGAACCGGACTGTGATGTATTTAACGGCGAGTCTGTAACGGTAGCGGTCTCGTCGGAGCTCAGGTACGACTGCTGCTTTCTCTGGGTCGAGGTGTCGCTGCCGGTGTTGACGGCGTACTTGTCGCAGCGAGTGGAGGAAATGCTCGACTCGGGGATGTTCCACGAGCTGGCCGAGTTCTACGGGGAAAACTCGGTGGGTCGAACCGGTCTGAGGAAGGCGATCGGAGTGGCGGAGTTCAGCCGGTACTTTAAGGAGTACCCGCCGCCACCTGCGGCGGAGGATGAAGATCCGGTGCGGCGGGGAGCATATGATGAGGCGGTGGGGGAGATTAAAAAGAACACGTGTCGGCTGGCGAAGAGGCAGATGGGAAAGATTGCGAGGCTGAGGAAGGCGGGGTGGGACCTACGGAGGCTGGACGCGACGGAGGCGTTTAGGGCGGCGGTGACGTCAGATGACGAGGAAGAGGGGAAGAGGTGGTCGGAGATTTGGGAGCGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAGGCATTTCTTGGTGGAGGAGGAGTAG

Protein Analysis

312

Amino Acids

34.92

Weight (kDa)

5.62

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 17 - 130 1.1e-08 Isopentenyl transferase
IPPT PF01715 53 - 127 4.8e-16 IPP transferase
IPPT PF01715 148 - 251 2.8e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 3 cut(s) 180, 264, 836
Acc36I ACCTGC 2 cut(s) 148, 664
AccB1I GGYRCC 2 cut(s) 65, 74
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 2 cut(s) 162, 378
AccII CGCG 5 cut(s) 88, 213, 252, 290, 806
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 2 cut(s) 123, 555
AcvI CACGTG 1 cut(s) 729
AcyI GRCGYC 5 cut(s) 66, 75, 177, 261, 833
AfaI GTAC 4 cut(s) 452, 503, 632, 644
AfiI CCNNNNNNNGG 3 cut(s) 289, 553, 597
AflIII ACRYGT 2 cut(s) 726, 728
AgeI ACCGGT 3 cut(s) 331, 381, 590
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 4 cut(s) 49, 193, 445, 553
AluI AGCT 4 cut(s) 49, 193, 445, 553
Alw21I GWGCWC 2 cut(s) 339, 447
Alw26I GTCTC 2 cut(s) 319, 439
AlwI GGATC 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 4 cut(s) 13, 28, 123, 555
ApeKI GCWGC 3 cut(s) 459, 484, 511
ArsI GACNNNNNNTTYG 4 cut(s) 144, 176, 198, 230
AsiGI ACCGGT 3 cut(s) 331, 381, 590
AspLEI GCGC 3 cut(s) 68, 77, 213
AspS9I GGNCC 4 cut(s) 14, 29, 348, 787
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 172, 248, 256, 841
AsuII TTCGAA 2 cut(s) 132, 387
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 2 cut(s) 348, 787
BanI GGYRCC 2 cut(s) 65, 74
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 548
BbrPI CACGTG 1 cut(s) 729
Bbv12I GWGCWC 2 cut(s) 339, 447
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 3 cut(s) 446, 471, 523
BccI CCATC 2 cut(s) 234, 745
BceAI ACGGC 4 cut(s) 43, 271, 427, 513
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 319, 439
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 2 cut(s) 69, 78
BfuAI ACCTGC 2 cut(s) 148, 664
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 348, 787
BmeRI GACNNNNNGTC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 4 cut(s) 14, 29, 348, 787
BmiI GGNNCC 4 cut(s) 67, 76, 349, 788
BmrFI CCNGG 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 3 cut(s) 294, 446, 770
Bpu14I TTCGAA 2 cut(s) 132, 387
BpuMI CCSGG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 5 cut(s) 66, 75, 177, 261, 833
BsaI GGTCTC 1 cut(s) 439
BsaWI WCCGGW 5 cut(s) 331, 381, 391, 590, 676
BsaXI ACNNNNNCTCC 5 cut(s) 179, 209, 434, 464, 920
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 553, 597
Bse118I RCCGGY 7 cut(s) 71, 77, 331, 381, 487, 590, 627
Bse8I GATNNNNATC 1 cut(s) 672
BseGI GGATG 3 cut(s) 360, 546, 673
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 289, 553, 597
BseMII CTCAG 4 cut(s) 308, 460, 587, 761
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 446, 471, 523
Bsh1236I CGCG 5 cut(s) 88, 213, 252, 290, 806
Bsh1285I CGRYCG 2 cut(s) 382, 609
BshFI GGCC 4 cut(s) 15, 30, 125, 557
BshNI GGYRCC 2 cut(s) 65, 74
BshTI ACCGGT 3 cut(s) 331, 381, 590
BsiEI CGRYCG 2 cut(s) 382, 609
BsiHKAI GWGCWC 2 cut(s) 339, 447
BsiHKCI CYCGRG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 183, 800
BslI CCNNNNNNNGG 3 cut(s) 289, 553, 597
BsmAI GTCTC 2 cut(s) 319, 439
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 183, 800
BsnI GGCC 4 cut(s) 15, 30, 125, 557
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 535
Bsp119I TTCGAA 2 cut(s) 132, 387
Bsp1286I GDGCHC 2 cut(s) 339, 447
Bsp143I GATC 2 cut(s) 606, 673
BspANI GGCC 4 cut(s) 15, 30, 125, 557
BspCNI CTCAG 4 cut(s) 307, 459, 588, 762
BspFNI CGCG 5 cut(s) 88, 213, 252, 290, 806
BspLI GGNNCC 4 cut(s) 67, 76, 349, 788
BspMI ACCTGC 2 cut(s) 148, 664
BspPI GGATC 1 cut(s) 668
BspT104I TTCGAA 2 cut(s) 132, 387
BspT107I GGYRCC 2 cut(s) 65, 74
BspTNI GGTCTC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 7 cut(s) 71, 77, 331, 381, 487, 590, 627
BssAI RCCGGY 7 cut(s) 71, 77, 331, 381, 487, 590, 627
BssMI GATC 2 cut(s) 606, 673
BssNI GRCGYC 5 cut(s) 66, 75, 177, 261, 833
BssSI CACGAG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 548
Bst4CI ACNGT 2 cut(s) 398, 427
Bst6I CTCTTC 3 cut(s) 737, 843, 851
BstACI GRCGYC 5 cut(s) 66, 75, 177, 261, 833
BstBAI YACGTR 1 cut(s) 729
BstBI TTCGAA 2 cut(s) 132, 387
BstC8I GCNNGC 4 cut(s) 79, 112, 555, 738
BstDEI CTNAG 4 cut(s) 294, 446, 596, 770
BstF5I GGATG 3 cut(s) 360, 546, 673
BstFNI CGCG 5 cut(s) 88, 213, 252, 290, 806
BstH2I RGCGCY 2 cut(s) 69, 78
BstHHI GCGC 3 cut(s) 68, 77, 213
BstKTI GATC 2 cut(s) 609, 676
BstMAI GTCTC 2 cut(s) 319, 439
BstMBI GATC 2 cut(s) 606, 673
BstMCI CGRYCG 2 cut(s) 382, 609
BstMWI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 812, 821
BstSCI CCNGG 1 cut(s) 317
BstUI CGCG 5 cut(s) 88, 213, 252, 290, 806
BstV1I GCAGC 3 cut(s) 446, 471, 523
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 4 cut(s) 15, 30, 125, 557
BtsCI GGATG 3 cut(s) 360, 546, 673
BveI ACCTGC 2 cut(s) 148, 664
Cac8I GCNNGC 4 cut(s) 79, 112, 555, 738
CfoI GCGC 3 cut(s) 68, 77, 213
Cfr10I RCCGGY 7 cut(s) 71, 77, 331, 381, 487, 590, 627
Cfr13I GGNCC 4 cut(s) 14, 29, 348, 787
CseI GACGC 3 cut(s) 202, 298, 812
Csp6I GTAC 4 cut(s) 451, 502, 631, 643
CspAI ACCGGT 3 cut(s) 331, 381, 590
CviAII CATG 1 cut(s) 61
CviQI GTAC 4 cut(s) 451, 502, 631, 643
DdeI CTNAG 4 cut(s) 294, 446, 596, 770
DinI GGCGCC 2 cut(s) 67, 76
DpnI GATC 2 cut(s) 608, 675
DpnII GATC 2 cut(s) 606, 673
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 123, 555
Eam1104I CTCTTC 3 cut(s) 737, 843, 851
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 3 cut(s) 737, 843, 851
EciI GGCGGA 2 cut(s) 632, 677
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 348, 787
Eco53kI GAGCTC 1 cut(s) 445
Eco72I CACGTG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 447
EgeI GGCGCC 2 cut(s) 67, 76
EheI GGCGCC 2 cut(s) 67, 76
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 694, 696
FaqI GGGAC 2 cut(s) 183, 800
FatI CATG 1 cut(s) 60
FauI CCCGC 7 cut(s) 119, 257, 277, 338, 654, 678, 772
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 2 cut(s) 162, 378
FokI GGATG 3 cut(s) 347, 553, 680
FriOI GRGCYC 1 cut(s) 447
FspBI CTAG 1 cut(s) 306
GlaI GCGC 3 cut(s) 67, 76, 212
HaeII RGCGCY 2 cut(s) 69, 78
HaeIII GGCC 4 cut(s) 15, 30, 125, 557
HgaI GACGC 3 cut(s) 202, 298, 812
HhaI GCGC 3 cut(s) 68, 77, 213
Hin1I GRCGYC 5 cut(s) 66, 75, 177, 261, 833
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 3 cut(s) 66, 75, 211
HinP1I GCGC 3 cut(s) 66, 75, 211
HincII GTYRAC 2 cut(s) 379, 495
HindII GTYRAC 2 cut(s) 379, 495
HinfI GANTC 5 cut(s) 171, 245, 285, 416, 533
HphI GGTGA 4 cut(s) 172, 248, 256, 841
Hpy166II GTNNAC 3 cut(s) 163, 379, 495
Hpy188I TCNGA 5 cut(s) 442, 597, 611, 838, 868
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 163, 379, 495
Hpy99I CGWCG 8 cut(s) 179, 218, 257, 263, 314, 344, 442, 811
HpyAV CCTTC 3 cut(s) 139, 595, 769
HpyCH4III ACNGT 2 cut(s) 398, 427
HpyCH4IV ACGT 5 cut(s) 37, 177, 261, 728, 833
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 812, 821
HpyF3I CTNAG 4 cut(s) 294, 446, 596, 770
HpySE526I ACGT 5 cut(s) 37, 177, 261, 728, 833
Hsp92I GRCGYC 5 cut(s) 66, 75, 177, 261, 833
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 3 cut(s) 66, 75, 211
KasI GGCGCC 2 cut(s) 65, 74
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 606, 673
LmnI GCTCC 5 cut(s) 54, 205, 442, 689, 877
Lsp1109I GCAGC 3 cut(s) 446, 471, 523
MaeI CTAG 1 cut(s) 306
MaeII ACGT 5 cut(s) 37, 177, 261, 728, 833
MaeIII GTNAC 4 cut(s) 178, 262, 421, 829
MalI GATC 2 cut(s) 608, 675
MbiI CCGCTC 1 cut(s) 200
MboI GATC 2 cut(s) 606, 673
MboII GAAGA 6 cut(s) 221, 683, 754, 860, 868, 916
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 339, 447
Mly113I GGCGCC 2 cut(s) 66, 75
MlyI GAGTC 5 cut(s) 165, 239, 279, 425, 527
MmeI TCCRAC 3 cut(s) 375, 420, 846
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 3 cut(s) 408, 636, 717
MspR9I CCNGG 1 cut(s) 319
MvnI CGCG 5 cut(s) 88, 213, 252, 290, 806
MwoI GCNNNNNNNGC 5 cut(s) 72, 74, 296, 812, 821
NaeI GCCGGC 1 cut(s) 79
NarI GGCGCC 2 cut(s) 66, 75
NciI CCSGG 1 cut(s) 319
NdeI CATATG 1 cut(s) 694
NdeII GATC 2 cut(s) 606, 673
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 4 cut(s) 67, 76, 349, 788
NmeAIII GCCGAG 2 cut(s) 298, 583
NmuCI GTSAC 3 cut(s) 178, 262, 829
NspV TTCGAA 2 cut(s) 132, 387
PaqCI CACCTGC 1 cut(s) 664
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 249, 384, 555
PdiI GCCGGC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 317
PinAI ACCGGT 3 cut(s) 331, 381, 590
Ple19I CGATCG 1 cut(s) 609
PleI GAGTC 5 cut(s) 165, 239, 279, 424, 527
PluTI GGCGCC 2 cut(s) 69, 78
PmaCI CACGTG 1 cut(s) 729
PmlI CACGTG 1 cut(s) 729
PpsI GAGTC 5 cut(s) 165, 239, 279, 424, 527
Ppu21I YACGTR 1 cut(s) 729
PpuMI RGGWCCY 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 787
PspCI CACGTG 1 cut(s) 729
PspN4I GGNNCC 4 cut(s) 67, 76, 349, 788
PspPI GGNCC 4 cut(s) 14, 29, 348, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 673
PvuI CGATCG 1 cut(s) 609
RsaI GTAC 4 cut(s) 452, 503, 632, 644
RsaNI GTAC 4 cut(s) 451, 502, 631, 643
SacI GAGCTC 1 cut(s) 447
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 408, 636, 717
Sau3AI GATC 2 cut(s) 606, 673
Sau96I GGNCC 4 cut(s) 14, 29, 348, 787
SchI GAGTC 5 cut(s) 165, 239, 279, 425, 527
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 339, 447
SfoI GGCGCC 2 cut(s) 67, 76
SfuI TTCGAA 2 cut(s) 132, 387
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 348, 787
SspDI GGCGCC 2 cut(s) 65, 74
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 398, 427
TaiI ACGT 5 cut(s) 40, 180, 264, 731, 836
TaqI TCGA 9 cut(s) 99, 132, 174, 243, 378, 387, 474, 531, 586
TauI GCSGC 7 cut(s) 91, 110, 293, 652, 662, 685, 827
Tru1I TTAA 3 cut(s) 408, 636, 717
Tru9I TTAA 3 cut(s) 408, 636, 717
TseFI GTSAC 3 cut(s) 178, 262, 829
TseI GCWGC 3 cut(s) 459, 484, 511
Tsp45I GTSAC 3 cut(s) 178, 262, 829
TspDTI ATGAA 2 cut(s) 349, 684
TspGWI ACGGA 2 cut(s) 808, 824
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 348, 787
XmiI GTMKAC 2 cut(s) 162, 378
XspI CTAG 1 cut(s) 306
ZraI GACGTC 3 cut(s) 178, 262, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.