Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Forward (+)

25693449 .. 25696250

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAATCACTTTGCGGTTCAACCAAACGCGTTCGCTGCCGGCGGAGATTTGAGAAGCAGCTCCGTTTCAGTTGTTGAAAGAGATCAAACCACCGTCGTTTGTCCAAAACCACGTCGTATTGGTCTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAGTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAGGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCCCCGTTTTTATGTGGGTCGCCGCCGAGCAGAGTCGCTAACCCATTAACACAGGATGCTCGATTTCGAGATGAGATTGTATCGGTTTCTTCAGTGATTCCGCCTCAGTTGGGTTTACCTCCTTCTTCATCTCCTTCTTCTTCCTCTGGGAGGAAAGGAGGATGTGTTGTTAGAGGCAATTTTGGTAACAGCCCAAAGGTTAGAGTTGAAGGGTTTGATTGTCTTGACAGGGATAGCAGAAACTGCAGCATCCCTGCCTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.77

Weight (kDa)

8.53

Isoelectric Point (pI)

65.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	14, 42, 308, 386
AcuI	CTGAAG	2 cut(s)	154, 360
AfiI	CCNNNNNNNGG	3 cut(s)	395, 435, 544
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	20, 77, 494
AhdI	GACNNNNNGTC	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	2 cut(s)	60, 187
AluI	AGCT	2 cut(s)	60, 187
Alw26I	GTCTC	2 cut(s)	128, 200
AlwNI	CAGNNNCTG	2 cut(s)	209, 528
ApeKI	GCWGC	3 cut(s)	35, 57, 531
AsuHPI	GGTGA	2 cut(s)	131, 223
BbvI	GCAGC	3 cut(s)	22, 69, 543
BccI	CCATC	3 cut(s)	144, 150, 233
BceAI	ACGGC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	128, 200
BfmI	CTRYAG	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	36, 58, 308, 532
BlsI	GCNGC	4 cut(s)	37, 59, 309, 533
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	113
BmsI	GCATC	2 cut(s)	331, 543
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	234, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 435, 544
Bse118I	RCCGGY	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	234, 543
BseGI	GGATG	5 cut(s)	142, 244, 346, 452, 534
BseLI	CCNNNNNNNGG	3 cut(s)	395, 435, 544
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	22, 69, 543
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	395, 435, 544
BsmAI	GTCTC	2 cut(s)	128, 200
BsmFI	GGGAC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	82, 152
BspACI	CCGC	4 cut(s)	14, 42, 308, 386
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	234, 543
BssMI	GATC	2 cut(s)	82, 152
BssT1I	CCWWGG	2 cut(s)	234, 543
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	217, 390, 549
BstENI	CCTNNNNNAGG	1 cut(s)	433
BstF5I	GGATG	5 cut(s)	142, 244, 346, 452, 534
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	85, 155
BstMAI	GTCTC	2 cut(s)	128, 200
BstMBI	GATC	2 cut(s)	82, 152
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 528
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	22, 69, 543
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	5 cut(s)	142, 244, 346, 452, 534
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	2 cut(s)	209, 528
Cfr10I	RCCGGY	1 cut(s)	38
CviJI	RGCY	4 cut(s)	60, 187, 477, 548
CviKI_1	RGCY	4 cut(s)	60, 187, 477, 548
DdeI	CTNAG	3 cut(s)	217, 390, 549
DpnI	GATC	2 cut(s)	84, 154
DpnII	GATC	2 cut(s)	82, 152
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EciI	GGCGGA	2 cut(s)	57, 375
Eco130I	CCWWGG	2 cut(s)	234, 543
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	2 cut(s)	214, 223
Eco57I	CTGAAG	2 cut(s)	154, 360
EcoNI	CCTNNNNNAGG	1 cut(s)	433
EcoRV	GATATC	2 cut(s)	214, 223
EcoT14I	CCWWGG	2 cut(s)	234, 543
ErhI	CCWWGG	2 cut(s)	234, 543
FaiI	YATR	3 cut(s)	227, 246, 298
FaqI	GGGAC	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	36, 58, 308, 532
FokI	GGATG	5 cut(s)	129, 251, 353, 459, 521
Fsp4HI	GCNGC	4 cut(s)	36, 58, 308, 532
GluI	GCNGC	4 cut(s)	36, 58, 308, 532
HapII	CCGG	1 cut(s)	39
HinfI	GANTC	5 cut(s)	4, 194, 278, 318, 382
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	131, 223
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188III	TCNNGA	3 cut(s)	150, 353, 509
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	98, 117
HpyAV	CCTTC	4 cut(s)	156, 417, 429, 488
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	251, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 528
HpyF3I	CTNAG	3 cut(s)	217, 390, 549
HpySE526I	ACGT	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	82, 152
LmnI	GCTCC	2 cut(s)	65, 184
LpnPI	CCDG	5 cut(s)	52, 254, 323, 417, 499
Lsp1109I	GCAGC	3 cut(s)	22, 69, 543
LweI	GCATC	2 cut(s)	331, 543
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	3 cut(s)	128, 164, 470
MalI	GATC	2 cut(s)	84, 154
MboI	GATC	2 cut(s)	82, 152
MboII	GAAGA	4 cut(s)	366, 402, 414, 417
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	2 cut(s)	179, 463
MluI	ACGCGT	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	272, 327
MnlI	CCTC	6 cut(s)	399, 414, 429, 437, 439, 452
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	2 cut(s)	261, 332
MspI	CCGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	35, 528
NaeI	GCCGGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	82, 152
NgoMIV	GCCGGC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 287
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	4, 194, 382
PkrI	GCNGC	4 cut(s)	37, 59, 309, 533
PleI	GAGTC	2 cut(s)	272, 326
PpsI	GAGTC	2 cut(s)	272, 326
PstI	CTGCAG	1 cut(s)	533
PstNI	CAGNNNCTG	2 cut(s)	209, 528
SaqAI	TTAA	2 cut(s)	261, 332
SatI	GCNGC	4 cut(s)	36, 58, 308, 532
Sau3AI	GATC	2 cut(s)	82, 152
SchI	GAGTC	2 cut(s)	272, 327
SetI	ASST	6 cut(s)	62, 115, 189, 273, 406, 486
SfaNI	GCATC	2 cut(s)	331, 543
SfcI	CTRYAG	1 cut(s)	529
Sse9I	AATT	2 cut(s)	179, 463
SsiI	CCGC	4 cut(s)	14, 42, 308, 386
StyI	CCWWGG	2 cut(s)	234, 543
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	151, 346, 352
TasI	AATT	2 cut(s)	179, 463
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	4, 194, 382
Tru1I	TTAA	2 cut(s)	261, 332
Tru9I	TTAA	2 cut(s)	261, 332
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	3 cut(s)	35, 57, 531
TspDTI	ATGAA	2 cut(s)	17, 402
TspGWI	ACGGA	3 cut(s)	52, 116, 149
TspRI	CASTG	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.