Rh4AG338100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003758
Physical Location & Seq
Forward (+)
64705436 .. 64706172
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG338100.1

Sequence Viewer

Length: 459 bp
ATGAGGACGGCGAGAGACTCCGTCGTTTGCCCCAAACCGCGCCGTTTCGGACTCCGCAACGCCACCTTTCACGATCCCGGCAGATCTCTCAGATGGCACCTCGGCCATCAAGGGGAGCTCTGTGATTCAAAGGCAGGCTCTGATGCTTTGGACTGTATCTTAACAAAGGGGGTTGAACAGTTTTCTTGTACAGAAATAGGCTCGCCGCACCCATTTTTCAGCGGATCGCCGCCGAGCAGAGTAGCTAATCCATTGATTCGGGATGCTAGATTTGGCAGTGAGAAGCTCACTCCAGTGTCACCGCTTTCACCGGTGTCGTCATCGTCTCCATCATCGTCCACAAGGAATGGAGGAGGCTGTGTTCGTGCTATTTTCGGGAGTAAACCAACAGTGAGGGTCGAGGGGTTTGATTGCCTCGACAGGGATAGCCGAAATTGCAGCATCCCTTCCCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.3

Weight (kDa)

9.2

Isoelectric Point (pI)

73.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AccII CGCG 1 cut(s) 40
AciI CCGC 6 cut(s) 38, 55, 206, 222, 230, 302
AclWI GGATC 2 cut(s) 68, 232
AcoI YGGCCR 1 cut(s) 103
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 112, 421, 451
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 129, 176
AjnI CCWGG 1 cut(s) 450
AleI CACNNNNGTG 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 3 cut(s) 118, 245, 286
AluI AGCT 3 cut(s) 118, 245, 286
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 9, 330
AlwI GGATC 2 cut(s) 68, 232
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 310
AspLEI GCGC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 291, 300
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 450
BccI CCATC 3 cut(s) 87, 114, 337
BceAI ACGGC 2 cut(s) 24, 27
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 9, 330
BfaI CTAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 83
BisI GCNGC 3 cut(s) 206, 230, 439
BlsI GCNGC 3 cut(s) 207, 231, 440
Bme1390I CCNGG 2 cut(s) 78, 452
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 78, 452
BmsI GCATC 3 cut(s) 133, 253, 450
BpmI CTGGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 100, 450
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 421, 451
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 100, 450
BseGI GGATG 2 cut(s) 268, 441
BseLI CCNNNNNNNGG 3 cut(s) 112, 421, 451
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 96
BshTI ACCGGT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 2 cut(s) 78, 311
BslI CCNNNNNNNGG 3 cut(s) 112, 421, 451
BsmAI GTCTC 2 cut(s) 9, 330
BsmBI CGTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 3 cut(s) 73, 83, 224
BspACI CCGC 6 cut(s) 38, 55, 206, 222, 230, 302
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 68, 232
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 188
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 100, 450
BssMI GATC 3 cut(s) 73, 83, 224
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 155, 180, 391
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 136, 203
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 268, 441
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 76, 86, 227
BstMAI GTCTC 2 cut(s) 9, 330
BstMBI GATC 3 cut(s) 73, 83, 224
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 76, 450
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 268, 441
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 283, 300, 396
Cac8I GCNNGC 2 cut(s) 136, 203
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 310
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 310
CviJI RGCY 9 cut(s) 105, 118, 138, 201, 245, 286, 357, 429, 455
CviKI_1 RGCY 9 cut(s) 105, 118, 138, 201, 245, 286, 357, 429, 455
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 89
DpnI GATC 3 cut(s) 75, 85, 226
DpnII GATC 3 cut(s) 73, 83, 224
EaeI YGGCCR 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 206, 230, 439
FokI GGATG 2 cut(s) 275, 428
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 206, 230, 439
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 41
GluI GCNGC 3 cut(s) 206, 230, 439
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 78, 311
HhaI GCGC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 4 cut(s) 17, 51, 125, 256
HpaII CCGG 2 cut(s) 78, 311
HphI GGTGA 2 cut(s) 291, 300
Hpy166II GTNNAC 2 cut(s) 339, 383
Hpy188I TCNGA 3 cut(s) 50, 92, 142
Hpy188III TCNNGA 3 cut(s) 71, 260, 376
Hpy8I GTNNAC 2 cut(s) 339, 383
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 3 cut(s) 155, 180, 391
HpyCH4V TGCA 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 1 cut(s) 89
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 73, 83, 224
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 91, 120, 306, 324, 406, 437
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 3 cut(s) 133, 253, 450
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 297
MalI GATC 3 cut(s) 75, 85, 226
MboI GATC 3 cut(s) 73, 83, 224
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 433
MlyI GAGTC 2 cut(s) 11, 45
MnlI CCTC 6 cut(s) 110, 344, 347, 387, 394, 425
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 2 cut(s) 78, 311
MspR9I CCNGG 2 cut(s) 78, 452
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 78
NdeII GATC 3 cut(s) 73, 83, 224
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 2 cut(s) 81, 258
NmuCI GTSAC 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 293
PfeI GAWTC 2 cut(s) 125, 256
PflFI GACNNNGTC 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 3 cut(s) 207, 231, 440
PleI GAGTC 2 cut(s) 11, 45
PpsI GAGTC 2 cut(s) 11, 45
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 3 cut(s) 206, 230, 439
Sau3AI GATC 3 cut(s) 73, 83, 224
SchI GAGTC 2 cut(s) 11, 45
ScrFI CCNGG 2 cut(s) 78, 452
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 68, 102, 120, 247, 288
SfaNI GCATC 3 cut(s) 133, 253, 450
SgrAI CRCCGGYG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 1 cut(s) 433
SsiI CCGC 6 cut(s) 38, 55, 206, 222, 230, 302
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 76, 450
TaaI ACNGT 3 cut(s) 155, 180, 391
TaqI TCGA 2 cut(s) 399, 417
TasI AATT 1 cut(s) 433
TatI WGTACW 1 cut(s) 188
TauI GCSGC 2 cut(s) 208, 232
TfiI GAWTC 2 cut(s) 125, 256
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 3 cut(s) 283, 300, 396
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 3 cut(s) 283, 300, 396
Tth111I GACNNNGTC 1 cut(s) 20
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.