Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Reverse (-)

9093217 .. 9096313

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTATCGCAGAATTTGCTTAGTGAAAACAAACATTCGGTAAACCCTATTAGGTGTCCTAGCGCTGGGATACCACTACATGGATGTCTTAAAGGTCGTGCGTTGACGTTTCAAAGCGAGGAAAAGATGAATCACTGTGCGATTCAGCAGAACAACGCGTGCGAAGAGATGAGGAATTTCAGAGACGGCGTCGTTTGCCCCAAGCCTCGACGTTTGAGGAACGCAACTCTTCACGAACCCGTCAGATCTTATCGATGGCATCTAGGCCACCAAGCTGAGCTCTGTGATGGGAGAGCAGGGTCAGATCTTTTGGAAAACCTCCTTACAAAGGGTTCTTATGGTGTTGAACAATTTTACTGTACGGAAATAGCCTCGTCGCACCCATTTTATAGCGGGTCGCCACCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTAGATTTGGGGACGAGAAGCTCACCCCATCTTCACCACTGTCACCTATACCTCCCCCTTCAGGTCTGTCATCGTCTCCATCATCCTCTGCAAGGAAAGGAGGCTGTGTTCGGGCCAGTTTTGGGAGCAAGCCAGCAGTGAGGGTTGAGGGGTTTGATTGCCTGGATAGGGATAGGAGAAACTGCAGAATCCCTACCCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.37

Weight (kDa)

8.99

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	13, 175
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	8 cut(s)	65, 80, 328, 497, 528, 558, 604, 634
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	113, 347
AjnI	CCWGG	2 cut(s)	597, 633
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	4 cut(s)	275, 280, 416, 457
AluI	AGCT	4 cut(s)	275, 280, 416, 457
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	177, 516
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	2 cut(s)	265, 549
ApoI	RAATTY	2 cut(s)	13, 175
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	451, 462, 471
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BccI	CCATC	4 cut(s)	249, 281, 472, 523
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	599, 635
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	177, 516
BfaI	CTAG	3 cut(s)	60, 263, 438
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	63
BglII	AGATCT	2 cut(s)	245, 304
BlpI	GCTNAGC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	599, 635
BmgT120I	GGNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	599, 635
BmsI	GCATC	2 cut(s)	268, 424
Bpu1102I	GCTNAGC	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	8 cut(s)	65, 80, 328, 497, 528, 558, 604, 634
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	599, 635
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	89, 439, 518
BseLI	CCNNNNNNNGG	8 cut(s)	65, 80, 328, 497, 528, 558, 604, 634
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	552
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	267, 551
BshVI	ATCGAT	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	8 cut(s)	65, 80, 328, 497, 528, 558, 604, 634
BsmAI	GTCTC	2 cut(s)	177, 516
BsmBI	CGTCTC	2 cut(s)	177, 516
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	267, 551
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	245, 304
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	2 cut(s)	267, 551
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	2 cut(s)	245, 304
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	599, 635
Bst4CI	ACNGT	3 cut(s)	137, 359, 477
Bst6I	CTCTTC	2 cut(s)	159, 234
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	160, 566, 570
BstDEI	CTNAG	2 cut(s)	20, 276
BstENI	CCTNNNNNAGG	2 cut(s)	326, 526
BstF5I	GGATG	3 cut(s)	89, 439, 518
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	248, 307
BstMAI	GTCTC	2 cut(s)	177, 516
BstMBI	GATC	2 cut(s)	245, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 195
BstNI	CCWGG	2 cut(s)	599, 635
BstSCI	CCNGG	2 cut(s)	597, 633
BstSFI	CTRYAG	1 cut(s)	619
BstUI	CGCG	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	245, 304
BstYI	RGATCY	2 cut(s)	245, 304
Bsu15I	ATCGAT	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	267, 551
BsuTUI	ATCGAT	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	89, 439, 518
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	133, 473, 579
Cac8I	GCNNGC	3 cut(s)	160, 566, 570
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	20, 276
DpnI	GATC	2 cut(s)	247, 306
DpnII	GATC	2 cut(s)	245, 304
Eam1104I	CTCTTC	2 cut(s)	159, 234
EarI	CTCTTC	2 cut(s)	159, 234
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	2 cut(s)	326, 526
EcoRII	CCWGG	2 cut(s)	597, 633
EcoT38I	GRGCYC	1 cut(s)	282
Esp3I	CGTCTC	2 cut(s)	177, 516
FaeI	CATG	1 cut(s)	83
FaiI	YATR	5 cut(s)	81, 339, 390, 485, 640
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	386
FokI	GGATG	3 cut(s)	96, 446, 505
FriOI	GRGCYC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	60, 263, 438
GlaI	GCGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	267, 551
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	130, 142, 624
HphI	GGTGA	3 cut(s)	451, 462, 471
Hpy166II	GTNNAC	2 cut(s)	43, 105
Hpy188I	TCNGA	3 cut(s)	182, 245, 304
Hpy188III	TCNNGA	2 cut(s)	233, 431
Hpy8I	GTNNAC	2 cut(s)	43, 105
Hpy99I	CGWCG	3 cut(s)	194, 213, 379
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	3 cut(s)	137, 359, 477
HpyCH4IV	ACGT	2 cut(s)	107, 211
HpyCH4V	TGCA	2 cut(s)	527, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 195
HpyF3I	CTNAG	2 cut(s)	20, 276
HpySE526I	ACGT	2 cut(s)	107, 211
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	245, 304
LmnI	GCTCC	1 cut(s)	561
LpnPI	CCDG	9 cut(s)	51, 282, 416, 483, 565, 582, 584, 611, 620
LweI	GCATC	2 cut(s)	268, 424
MaeI	CTAG	3 cut(s)	60, 263, 438
MaeII	ACGT	2 cut(s)	107, 211
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	2 cut(s)	247, 306
MboI	GATC	2 cut(s)	245, 304
MboII	GAAGA	3 cut(s)	176, 221, 459
MflI	RGATCY	2 cut(s)	245, 304
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	4 cut(s)	13, 175, 350, 426
MluI	ACGCGT	1 cut(s)	156
MseI	TTAA	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	599, 635
MvaI	CCWGG	2 cut(s)	599, 635
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	16, 195
NdeII	GATC	2 cut(s)	245, 304
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	130, 142, 624
PflFI	GACNNNGTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	597, 633
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	597, 633
PspPI	GGNCC	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	245, 304
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	245, 304
Sau96I	GGNCC	1 cut(s)	549
ScrFI	CCNGG	2 cut(s)	599, 635
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	268, 424
SfcI	CTRYAG	1 cut(s)	619
Sse9I	AATT	4 cut(s)	13, 175, 350, 426
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	3 cut(s)	60, 263, 438
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	597, 633
TaaI	ACNGT	3 cut(s)	137, 359, 477
TaiI	ACGT	2 cut(s)	110, 214
TaqI	TCGA	2 cut(s)	208, 253
TasI	AATT	4 cut(s)	13, 175, 350, 426
TfiI	GAWTC	3 cut(s)	130, 142, 624
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	3 cut(s)	140, 480, 579
TseFI	GTSAC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	3 cut(s)	140, 480, 579
Tth111I	GACNNNGTC	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	80
XagI	CCTNNNNNAGG	2 cut(s)	326, 526
XapI	RAATTY	2 cut(s)	13, 175
XspI	CTAG	3 cut(s)	60, 263, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.