Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Forward (+)

28368255 .. 28369823

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27321.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTCTCCCTTCTTTCCCTTCACTCAGTTTTGCCTTCCTTCTCGTTCCAACCTCACCACCAGCTCCCACTCAAACTTCAGACAAGCAGCGCTCTTTCGGTTTGCGAAGAGATGAGGACGGCCCGAGACTCCGTCGTTTGCCCCCAACCGCGCCGTTTCGGACTCCGAAACGCCACCTTTCACGATCCCGTCAGATCTCTCCGTTGGCATCTCGGCCATCAAGGAGAGCTCTGTGATTCAAAGGCTGCCTCTGATGCTTTGGACAGTATCTTAACAAAGGGGGTTGAACCGTTTTCGTTTACAGAAATAGGCTCGCCGCACCCATTTTTCAACGGGTCGCCGCCGGGTAGAGTAGCTAACCCATTGATTCGGGATGATAGATTTGGGAGTGAGACACTGACCCCAGTGTCGCCACTTTCACCGGTGTCGTCATCGTCTCCATCATCTTCTACAAGGAGTGGAGGAGGCTTTGTTCGTGCCATTTTTGGGAGCAAGCCGACAGTGAGGGTCGAGGGCTTTGATTGCCTGGACAGGGATAGCCGAAATTGCCGCATTCCTTCCCTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.54

Weight (kDa)

8.75

Isoelectric Point (pI)

71.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	406
AccII	CGCG	1 cut(s)	151
AciI	CCGC	4 cut(s)	149, 317, 341, 550
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	486, 532
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	240, 287, 331
AjnI	CCWGG	2 cut(s)	525, 561
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	3 cut(s)	64, 229, 356
AluI	AGCT	3 cut(s)	64, 229, 356
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	3 cut(s)	120, 386, 441
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	123
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	120, 214
ApeKI	GCWGC	2 cut(s)	87, 245
AsiGI	ACCGGT	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	92, 153
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	47, 411
AvaI	CYCGRG	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	99, 232
BccI	CCATC	2 cut(s)	225, 448
BceAI	ACGGC	2 cut(s)	135, 138
BciT130I	CCWGG	2 cut(s)	527, 563
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	120, 386, 441
BfoI	RGCGCY	1 cut(s)	93
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	5 cut(s)	88, 246, 317, 341, 550
BlsI	GCNGC	5 cut(s)	89, 247, 318, 342, 551
Bme1390I	CCNGG	3 cut(s)	345, 527, 563
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	345, 527, 563
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	217, 244
BmuI	ACTGGG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 532
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	2 cut(s)	527, 563
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	486, 532
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	99, 232
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	122, 216
BshTI	ACCGGT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	344, 422
BslI	CCNNNNNNNGG	2 cut(s)	486, 532
BsmAI	GTCTC	3 cut(s)	120, 386, 441
BsmBI	CGTCTC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	122, 216
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	184, 194
BspACI	CCGC	4 cut(s)	149, 317, 341, 550
BspANI	GGCC	2 cut(s)	122, 216
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	2 cut(s)	184, 194
Bst2UI	CCWGG	2 cut(s)	527, 563
Bst4CI	ACNGT	3 cut(s)	266, 291, 502
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	314, 494
BstDEI	CTNAG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 153
BstKTI	GATC	2 cut(s)	187, 197
BstMAI	GTCTC	3 cut(s)	120, 386, 441
BstMBI	GATC	2 cut(s)	184, 194
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 522, 546
BstNI	CCWGG	2 cut(s)	527, 563
BstSCI	CCNGG	3 cut(s)	343, 525, 561
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	99, 232
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	122, 216
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	395, 411, 507
Cac8I	GCNNGC	2 cut(s)	314, 494
CfoI	GCGC	2 cut(s)	92, 153
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	2 cut(s)	186, 196
DpnII	GATC	2 cut(s)	184, 194
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	525, 561
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	88, 246, 317, 341, 550
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	88, 246, 317, 341, 550
GlaI	GCGC	2 cut(s)	91, 152
GluI	GCNGC	5 cut(s)	88, 246, 317, 341, 550
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	122, 216
HapII	CCGG	2 cut(s)	344, 422
HhaI	GCGC	2 cut(s)	92, 153
Hin6I	GCGC	2 cut(s)	90, 151
HinP1I	GCGC	2 cut(s)	90, 151
HinfI	GANTC	4 cut(s)	128, 162, 236, 367
HpaII	CCGG	2 cut(s)	344, 422
HphI	GGTGA	2 cut(s)	47, 411
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	5 cut(s)	81, 161, 167, 194, 253
Hpy188III	TCNNGA	2 cut(s)	182, 371
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	20, 29, 45, 49, 567
HpyCH4III	ACNGT	3 cut(s)	266, 291, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 522, 546
HpyF3I	CTNAG	1 cut(s)	25
HspAI	GCGC	2 cut(s)	90, 151
Kzo9I	GATC	2 cut(s)	184, 194
LmnI	GCTCC	2 cut(s)	69, 489
LpnPI	CCDG	8 cut(s)	74, 357, 417, 435, 512, 517, 539, 548
Lsp1109I	GCAGC	2 cut(s)	99, 232
LweI	GCATC	2 cut(s)	217, 244
MalI	GATC	2 cut(s)	186, 196
MboI	GATC	2 cut(s)	184, 194
MboII	GAAGA	2 cut(s)	119, 438
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	544
MlyI	GAGTC	2 cut(s)	122, 156
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	63, 108, 259, 455, 458, 498, 505
MseI	TTAA	1 cut(s)	272
MspI	CCGG	2 cut(s)	344, 422
MspR9I	CCNGG	3 cut(s)	345, 527, 563
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	527, 563
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	254, 522, 546
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	184, 194
NmeAIII	GCCGAG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	236, 367
PflFI	GACNNNGTC	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	89, 247, 318, 342, 551
PleI	GAGTC	2 cut(s)	122, 156
PpsI	GAGTC	2 cut(s)	122, 156
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	525, 561
PspGI	CCWGG	2 cut(s)	525, 561
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	5 cut(s)	88, 246, 317, 341, 550
Sau3AI	GATC	2 cut(s)	184, 194
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	122, 156
ScrFI	CCNGG	3 cut(s)	345, 527, 563
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	55, 66, 179, 231, 358
SfaNI	GCATC	2 cut(s)	217, 244
SgrAI	CRCCGGYG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	4 cut(s)	149, 317, 341, 550
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	343, 525, 561
TaaI	ACNGT	3 cut(s)	266, 291, 502
TaqI	TCGA	1 cut(s)	510
TasI	AATT	1 cut(s)	544
TauI	GCSGC	3 cut(s)	319, 343, 552
TfiI	GAWTC	2 cut(s)	236, 367
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	3 cut(s)	402, 411, 507
TseI	GCWGC	2 cut(s)	87, 245
TspGWI	ACGGA	2 cut(s)	121, 191
TspRI	CASTG	3 cut(s)	402, 411, 507
Tth111I	GACNNNGTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.