Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Reverse (-)

30243806 .. 30245804

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAATCACTGTGCGATTCAGCAAGGCAACGCCCTCTCTGCTTGCGAAGAGATGCGGACTTGTTCAAGAGACTCAGTCGTTTGTCCCAAACCTCGCCGTTTTGGCCTCCTCAACGCCACTCATCACGATCCCGTCAGATCTCTCAGATGGCAGCTTGGCCACCAAGCGGAGCTCTATGATTCAAAAGCAGGGTCTGATATTTTGGACAACCTCCTCACCAAGGGTTCTTTTGGTGTTGAACAATTTTCATGTACAGAAATAGCCTCGCCGCACCCATTTTTCAGCGGGTCGCCGCCGAGCAGAGTAGCTAACCCATTAATTCAGGACGCCCGATTTGGGGATGAGAAGCTCACCCCATCCTCGCCACTGTCACCAACCCCTCACCCGTCGGGCCTATCCTCGTCTCCAACAACTTCTGCAAGGAAAGGAAGCTTTGTTCGGGCCAGTTTTGGGAGCAAACCAGCAGTGAGGGTGGAGGGGTTTGATTGCCTGGACAGGGATCGACGTAATTGCAGCATCCCTACCCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.18

Weight (kDa)

8.54

Isoelectric Point (pI)

64.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	55, 167, 269, 285, 293
AclWI	GGATC	2 cut(s)	122, 507
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	7 cut(s)	166, 220, 336, 337, 450, 496, 526
AgsI	TTSAA	3 cut(s)	66, 183, 239
AjnI	CCWGG	2 cut(s)	489, 525
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	5 cut(s)	154, 172, 308, 349, 432
AluI	AGCT	5 cut(s)	154, 172, 308, 349, 432
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	63, 408
AlwI	GGATC	2 cut(s)	122, 507
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	103, 157, 391, 441
ApeKI	GCWGC	2 cut(s)	151, 513
ArsI	GACNNNNNNTTYG	4 cut(s)	176, 208, 317, 349
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	391, 441
AsuHPI	GGTGA	4 cut(s)	208, 343, 363, 374
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	163, 525
BccI	CCATC	2 cut(s)	141, 364
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	491, 527
BcoDI	GTCTC	2 cut(s)	63, 408
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	4 cut(s)	152, 269, 293, 514
BlsI	GCNGC	4 cut(s)	153, 270, 294, 515
Bme1390I	CCNGG	2 cut(s)	491, 527
BmgT120I	GGNCC	2 cut(s)	391, 441
BmrFI	CCNGG	2 cut(s)	491, 527
BmsI	GCATC	2 cut(s)	42, 525
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	219, 525
Bsc4I	CCNNNNNNNGG	7 cut(s)	166, 220, 336, 337, 450, 496, 526
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	491, 527
BseDI	CCNNGG	2 cut(s)	219, 525
BseGI	GGATG	3 cut(s)	346, 356, 516
BseLI	CCNNNNNNNGG	7 cut(s)	166, 220, 336, 337, 450, 496, 526
BseMII	CTCAG	2 cut(s)	87, 157
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	98, 203
BseXI	GCAGC	2 cut(s)	163, 525
BshFI	GGCC	4 cut(s)	105, 159, 393, 443
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	7 cut(s)	166, 220, 336, 337, 450, 496, 526
BsmAI	GTCTC	2 cut(s)	63, 408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	4 cut(s)	105, 159, 393, 443
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	127, 137, 499
BspACI	CCGC	5 cut(s)	55, 167, 269, 285, 293
BspANI	GGCC	4 cut(s)	105, 159, 393, 443
BspCNI	CTCAG	2 cut(s)	86, 156
BspPI	GGATC	2 cut(s)	122, 507
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	219, 525
BssMI	GATC	3 cut(s)	127, 137, 499
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	491, 527
Bst4CI	ACNGT	2 cut(s)	11, 369
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	73, 143
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	346, 356, 516
BstKTI	GATC	3 cut(s)	130, 140, 502
BstMAI	GTCTC	2 cut(s)	63, 408
BstMBI	GATC	3 cut(s)	127, 137, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 102
BstNI	CCWGG	2 cut(s)	491, 527
BstSCI	CCNGG	2 cut(s)	489, 525
BstV1I	GCAGC	2 cut(s)	163, 525
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	105, 159, 393, 443
BtsCI	GGATG	3 cut(s)	346, 356, 516
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	3 cut(s)	7, 365, 471
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	391, 441
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	249
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	73, 143
DpnI	GATC	3 cut(s)	129, 139, 501
DpnII	GATC	3 cut(s)	127, 137, 499
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	489, 525
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	1 cut(s)	252
FaiI	YATR	3 cut(s)	177, 250, 532
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	248
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	4 cut(s)	152, 269, 293, 514
FokI	GGATG	3 cut(s)	343, 353, 503
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	152, 269, 293, 514
GluI	GCNGC	4 cut(s)	152, 269, 293, 514
HaeIII	GGCC	4 cut(s)	105, 159, 393, 443
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	4 cut(s)	4, 16, 71, 179
HphI	GGTGA	4 cut(s)	208, 343, 363, 374
Hpy188I	TCNGA	3 cut(s)	137, 146, 196
Hpy188III	TCNNGA	3 cut(s)	66, 125, 323
Hpy99I	CGWCG	2 cut(s)	391, 507
HpyCH4III	ACNGT	2 cut(s)	11, 369
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	2 cut(s)	419, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 102
HpyF3I	CTNAG	2 cut(s)	73, 143
HpySE526I	ACGT	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	127, 137, 499
LmnI	GCTCC	2 cut(s)	169, 453
LpnPI	CCDG	8 cut(s)	174, 308, 457, 474, 476, 481, 503, 512
Lsp1109I	GCAGC	2 cut(s)	163, 525
LweI	GCATC	2 cut(s)	42, 525
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	129, 139, 501
MboI	GATC	3 cut(s)	127, 137, 499
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	3 cut(s)	242, 318, 508
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	431
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	491, 527
MvaI	CCWGG	2 cut(s)	491, 527
MwoI	GCNNNNNNNGC	2 cut(s)	38, 102
NdeII	GATC	3 cut(s)	127, 137, 499
NlaIII	CATG	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	4, 16, 179
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	153, 270, 294, 515
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	489, 525
PspGI	CCWGG	2 cut(s)	489, 525
PspPI	GGNCC	2 cut(s)	391, 441
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	4 cut(s)	152, 269, 293, 514
Sau3AI	GATC	3 cut(s)	127, 137, 499
Sau96I	GGNCC	2 cut(s)	391, 441
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	491, 527
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	94, 156, 174, 213, 310, 351, 434, 508
SfaNI	GCATC	2 cut(s)	42, 525
Sse9I	AATT	3 cut(s)	242, 318, 508
SsiI	CCGC	5 cut(s)	55, 167, 269, 285, 293
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	489, 525
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	11, 369
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	502
TasI	AATT	3 cut(s)	242, 318, 508
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	2 cut(s)	271, 295
TfiI	GAWTC	3 cut(s)	4, 16, 179
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	3 cut(s)	14, 372, 471
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	2 cut(s)	151, 513
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	17, 237
TspRI	CASTG	3 cut(s)	14, 372, 471
Tth111I	GACNNNGTC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.