Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Forward (+)

2847214 .. 2849124

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1041500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAATCACTGTGCGATTCAGCAAGGAAACGCCCTCTCAGCTTGCGACGACATGAGGACTTGTTCCAGAGACTCGGTAGTTTGTCCCAAACCTCGCCGATTTGGTCTCCTTAACGTTAACCAGAACGATCCCGTCAGATCTCTCCGATGGCATCTCGGCCACCAAGCGGAGCTCTATGATTCGAAAGCAGGGTCTGAAATTTTGGACAACATTCTCTCAAAGGGATCTTTTGGTGTTGAACAATTATCGTGTACAGAAATAGCCTCGCCGCACCCATTTTTCAGCGGGTCACCGCCGAGCAGAGTAGCTAACCCATTAATTCAGGATGCTAGATTTGGGGATGAGAAACTCACCCCATTGTCACCACTGTCGCCAACCGCTCCCCCATTGGGCCTTTCATCGTCTCCTTCATCATCTGCTAGGAAAGGAGGCTATGCTCGGGCCAGTTTCGGGAGCAAACCAGCAGTGAGGATCGAGGGGTTTGATTGCCTGGACAGGGATCGACGTAATTGCAGTATCCCTACCCTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.07

Weight (kDa)

8.53

Isoelectric Point (pI)

77.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	5 cut(s)	167, 269, 285, 293, 378
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	4 cut(s)	122, 232, 479, 507
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	5 cut(s)	166, 389, 450, 496, 526
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	489, 525
AluBI	AGCT	3 cut(s)	41, 172, 308
AluI	AGCT	3 cut(s)	41, 172, 308
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	3 cut(s)	63, 110, 408
AlwI	GGATC	4 cut(s)	122, 232, 479, 507
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	3 cut(s)	157, 391, 441
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	391, 441
AsuHPI	GGTGA	3 cut(s)	282, 343, 354
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	491, 527
BciVI	GTATCC	1 cut(s)	527
BcoDI	GTCTC	3 cut(s)	63, 110, 408
BfaI	CTAG	2 cut(s)	330, 420
BfuI	GTATCC	1 cut(s)	527
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	491, 527
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	391, 441
BmrFI	CCNGG	2 cut(s)	491, 527
BmsI	GCATC	2 cut(s)	160, 316
Bpu14I	TTCGAA	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 389, 450, 496, 526
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	491, 527
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	331, 346
BseLI	CCNNNNNNNGG	5 cut(s)	166, 389, 450, 496, 526
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	159, 393, 443
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	5 cut(s)	166, 389, 450, 496, 526
BsmAI	GTCTC	3 cut(s)	63, 110, 408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	159, 393, 443
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	127, 137, 224, 471, 499
BspACI	CCGC	5 cut(s)	167, 269, 285, 293, 378
BspANI	GGCC	3 cut(s)	159, 393, 443
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	4 cut(s)	122, 232, 479, 507
BspT104I	TTCGAA	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	5 cut(s)	127, 137, 224, 471, 499
Bst2UI	CCWGG	2 cut(s)	491, 527
Bst4CI	ACNGT	2 cut(s)	11, 369
BstAUI	TGTACA	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	331, 346
BstKTI	GATC	5 cut(s)	130, 140, 227, 474, 502
BstMAI	GTCTC	3 cut(s)	63, 110, 408
BstMBI	GATC	5 cut(s)	127, 137, 224, 471, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	491, 527
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	489, 525
BstX2I	RGATCY	2 cut(s)	137, 224
BstYI	RGATCY	2 cut(s)	137, 224
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	3 cut(s)	159, 393, 443
BtsCI	GGATG	2 cut(s)	331, 346
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	3 cut(s)	7, 365, 471
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	391, 441
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	52, 531
CviJI	RGCY	8 cut(s)	41, 159, 172, 263, 308, 393, 432, 443
CviKI_1	RGCY	8 cut(s)	41, 159, 172, 263, 308, 393, 432, 443
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	5 cut(s)	129, 139, 226, 473, 501
DpnII	GATC	5 cut(s)	127, 137, 224, 471, 499
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	489, 525
EcoT38I	GRGCYC	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	2 cut(s)	55, 534
FaiI	YATR	4 cut(s)	53, 177, 435, 532
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	51, 530
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	338, 353
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	2 cut(s)	330, 420
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	159, 393, 443
Hin1II	CATG	2 cut(s)	55, 534
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	4, 16, 71, 179
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	3 cut(s)	282, 343, 354
Hpy166II	GTNNAC	2 cut(s)	118, 252
Hpy188I	TCNGA	3 cut(s)	137, 146, 196
Hpy188III	TCNNGA	3 cut(s)	66, 323, 451
Hpy8I	GTNNAC	2 cut(s)	118, 252
Hpy99I	CGWCG	2 cut(s)	50, 507
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	11, 369
HpyCH4IV	ACGT	2 cut(s)	114, 505
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	2 cut(s)	114, 505
Hsp92II	CATG	2 cut(s)	55, 534
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	127, 137, 224, 471, 499
LmnI	GCTCC	3 cut(s)	169, 385, 453
LweI	GCATC	2 cut(s)	160, 316
MaeI	CTAG	2 cut(s)	330, 420
MaeII	ACGT	2 cut(s)	114, 505
MaeIII	GTNAC	2 cut(s)	288, 360
MalI	GATC	5 cut(s)	129, 139, 226, 473, 501
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	5 cut(s)	127, 137, 224, 471, 499
MflI	RGATCY	2 cut(s)	137, 224
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	4 cut(s)	198, 242, 318, 508
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	44, 48, 102, 274, 422, 462, 469
MseI	TTAA	3 cut(s)	111, 117, 317
MspA1I	CMGCKG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	491, 527
MvaI	CCWGG	2 cut(s)	491, 527
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	5 cut(s)	127, 137, 224, 471, 499
NlaIII	CATG	2 cut(s)	55, 534
NmeAIII	GCCGAG	2 cut(s)	135, 321
NmuCI	GTSAC	2 cut(s)	288, 360
NspV	TTCGAA	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	4, 16, 179
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	489, 525
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	489, 525
PspPI	GGNCC	2 cut(s)	391, 441
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	137, 224
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	111, 117, 317
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	5 cut(s)	127, 137, 224, 471, 499
Sau96I	GGNCC	2 cut(s)	391, 441
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	491, 527
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	43, 94, 117, 174, 310, 508
SfaNI	GCATC	2 cut(s)	160, 316
SfuI	TTCGAA	1 cut(s)	182
Sse9I	AATT	4 cut(s)	198, 242, 318, 508
SsiI	CCGC	5 cut(s)	167, 269, 285, 293, 378
SspMI	CTAG	2 cut(s)	330, 420
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	489, 525
TaaI	ACNGT	2 cut(s)	11, 369
TaiI	ACGT	2 cut(s)	117, 508
TaqI	TCGA	3 cut(s)	182, 474, 502
TasI	AATT	4 cut(s)	198, 242, 318, 508
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	4, 16, 179
Tru1I	TTAA	3 cut(s)	111, 117, 317
Tru9I	TTAA	3 cut(s)	111, 117, 317
TscAI	CASTG	3 cut(s)	14, 372, 471
TseFI	GTSAC	2 cut(s)	288, 360
Tsp45I	GTSAC	2 cut(s)	288, 360
TspDTI	ATGAA	3 cut(s)	17, 387, 399
TspRI	CASTG	3 cut(s)	14, 372, 471
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	2 cut(s)	330, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.