Rh4BG346200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003758
Physical Location & Seq
Forward (+)
50878031 .. 50879789
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG346200.1

Sequence Viewer

Length: 351 bp
ATGTTGGGGTTATGGTTGTTAATATGCTTTATGCTTATTAAGATTGGATTTTGTTTGCAGGGGGTTGAACAGTTTTCTTGTACAGAAATAGGCTCGCCGCACCCATTTTTCAGCGGATCGCCGCCGAGCAGAGTAGCTAATCCATTGATTCGGGATGCTAGATTTGGCAGTGAGAAGCTCACTCCAGTGTCACCGCTTTCACCGGTGTCTTCATCGTCTCCATCATCTTCCACAAGGAATGGAGGAGGCTGTGTTCGTGCTATTTTCGGGAGTAAACCAACAGTGAGGGTCGAGGGGTTTGATTGCCTGGACAGGGATAGCCGAAATTGCAGCATCCCTTCCCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.38

Weight (kDa)

8.66

Isoelectric Point (pI)

73.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 98, 114, 122, 194
AclWI GGATC 1 cut(s) 124
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 313, 343
AgeI ACCGGT 1 cut(s) 202
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 2 cut(s) 306, 342
AleI CACNNNNGTG 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 137, 178
AluI AGCT 2 cut(s) 137, 178
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 330
AsiGI ACCGGT 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 183, 192
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 2 cut(s) 308, 344
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 159
BisI GCNGC 3 cut(s) 98, 122, 331
BlsI GCNGC 3 cut(s) 99, 123, 332
Bme1390I CCNGG 2 cut(s) 308, 344
BmrFI CCNGG 2 cut(s) 308, 344
BmsI GCATC 2 cut(s) 145, 342
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 343
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 308, 344
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 160, 333
BseLI CCNNNNNNNGG 2 cut(s) 313, 343
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 202
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 313, 343
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 80
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 4 cut(s) 98, 114, 122, 194
BspPI GGATC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 80
BsrI ACTGG 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 308, 344
Bst4CI ACNGT 2 cut(s) 72, 283
BstAUI TGTACA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 160, 333
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 2 cut(s) 308, 344
BstSCI CCNGG 2 cut(s) 306, 342
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 201
BtsCI GGATG 2 cut(s) 160, 333
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 175, 192, 288
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 202
Csp6I GTAC 1 cut(s) 81
CspAI ACCGGT 1 cut(s) 202
CviJI RGCY 6 cut(s) 93, 137, 178, 249, 321, 347
CviKI_1 RGCY 6 cut(s) 93, 137, 178, 249, 321, 347
CviQI GTAC 1 cut(s) 81
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 306, 342
Esp3I CGTCTC 1 cut(s) 222
FaiI YATR 3 cut(s) 13, 25, 32
Fnu4HI GCNGC 3 cut(s) 98, 122, 331
FokI GGATG 2 cut(s) 167, 320
Fsp4HI GCNGC 3 cut(s) 98, 122, 331
FspBI CTAG 1 cut(s) 159
GluI GCNGC 3 cut(s) 98, 122, 331
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 1 cut(s) 203
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 183, 192
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 152, 268
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 72, 283
HpyCH4V TGCA 2 cut(s) 58, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 7 cut(s) 44, 198, 216, 293, 298, 320, 329
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 145, 342
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 201, 219
MluCI AATT 1 cut(s) 325
MnlI CCTC 4 cut(s) 236, 239, 279, 286
MseI TTAA 2 cut(s) 20, 39
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 308, 344
MvaI CCWGG 2 cut(s) 308, 344
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 185
PfeI GAWTC 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 202
PkrI GCNGC 3 cut(s) 99, 123, 332
Psp6I CCWGG 2 cut(s) 306, 342
PspGI CCWGG 2 cut(s) 306, 342
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 20, 39
SatI GCNGC 3 cut(s) 98, 122, 331
Sau3AI GATC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 308, 344
SetI ASST 2 cut(s) 139, 180
SfaNI GCATC 2 cut(s) 145, 342
SgrAI CRCCGGYG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 325
SsiI CCGC 4 cut(s) 98, 114, 122, 194
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 306, 342
TaaI ACNGT 2 cut(s) 72, 283
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 80
TauI GCSGC 2 cut(s) 100, 124
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 20, 39
Tru9I TTAA 2 cut(s) 20, 39
TscAI CASTG 3 cut(s) 175, 192, 288
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 3 cut(s) 175, 192, 288
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.