Prupe.1G311600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003758
Physical Location & Seq
Reverse (-)
30240518 .. 30242818
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G311600.1

Sequence Viewer

Length: 525 bp
ATGAATCACTGTGCGATACAGCAAGGCAACGCCCTCTCAGCTTGCGAAGACATGAGGACTTATTCAAGAGACTCCGTCGTTTGTCCCAAACCTCGCCGTTTTGGCCTTCTAAACGCCAGCCCTCACGATCCCGTCAGATCTTTCAGATGGCAATTTGGCCACCAAGCGGAGCTCTGTGATCCAAAGGCAGGGTCTGATATTTTGGACAACCTCCTCACAAAGGGATCTTTCGGCGTTGAACAATTTTCGTGTACAGAAATGGCCTCGCAGCACCCATTTTATAGCGGGTCGCCGCCCAGCAGAGTAGCTAACCCATTAATTCAGGACGCTCGATTTGGGAATGAGAAACTCACCCCACTCTCACCAATACCCGCCCCGTCTGGTCTATCCTCGTCTCCTTCGTCATCCACAAGGAAAGGAGGCTTTGTTCGGGCCAATTTTGGGAGCAAACCAGCCGTGAGGGTCGAGGGGTTTGATTGCCTGGATAGGGATAGGAGAAATTGCAGCATCCCTACCCTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.93

Weight (kDa)

8.77

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 167, 285, 293, 372
AclWI GGATC 3 cut(s) 122, 173, 232
AcoI YGGCCR 1 cut(s) 157
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 6 cut(s) 166, 188, 220, 441, 487, 517
AgsI TTSAA 2 cut(s) 66, 239
AjnI CCWGG 2 cut(s) 480, 516
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
AluBI AGCT 3 cut(s) 41, 172, 308
AluI AGCT 3 cut(s) 41, 172, 308
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 63, 399
AlwI GGATC 3 cut(s) 122, 173, 232
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 4 cut(s) 103, 157, 261, 432
ApeKI GCWGC 2 cut(s) 268, 504
ArsI GACNNNNNNTTYG 4 cut(s) 176, 208, 317, 349
AseI ATTAAT 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 343, 354
BalI TGGCCA 1 cut(s) 159
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 280, 516
BccI CCATC 1 cut(s) 141
BceAI ACGGC 2 cut(s) 81, 440
BciT130I CCWGG 2 cut(s) 482, 518
BcoDI GTCTC 2 cut(s) 63, 399
BglI GCCNNNNNGGC 1 cut(s) 102
BglII AGATCT 1 cut(s) 137
BisI GCNGC 3 cut(s) 269, 293, 505
BlsI GCNGC 3 cut(s) 270, 294, 506
Bme1390I CCNGG 2 cut(s) 482, 518
BmgT120I GGNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 482, 518
BmsI GCATC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 188, 220, 441, 487, 517
BseBI CCWGG 2 cut(s) 482, 518
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 2 cut(s) 404, 507
BseLI CCNNNNNNNGG 6 cut(s) 166, 188, 220, 441, 487, 517
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 280, 516
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 4 cut(s) 105, 159, 263, 434
BsiHKAI GWGCWC 1 cut(s) 174
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 6 cut(s) 166, 188, 220, 441, 487, 517
BsmAI GTCTC 2 cut(s) 63, 399
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 4 cut(s) 105, 159, 263, 434
Bsp1286I GDGCHC 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 4 cut(s) 127, 137, 178, 224
BspACI CCGC 4 cut(s) 167, 285, 293, 372
BspANI GGCC 4 cut(s) 105, 159, 263, 434
BspCNI CTCAG 1 cut(s) 50
BspPI GGATC 3 cut(s) 122, 173, 232
BsrGI TGTACA 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 4 cut(s) 127, 137, 178, 224
Bst2UI CCWGG 2 cut(s) 482, 518
Bst4CI ACNGT 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 43, 118
BstDEI CTNAG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 404, 507
BstKTI GATC 4 cut(s) 130, 140, 181, 227
BstMAI GTCTC 2 cut(s) 63, 399
BstMBI GATC 4 cut(s) 127, 137, 178, 224
BstMWI GCNNNNNNNGC 2 cut(s) 38, 102
BstNI CCWGG 2 cut(s) 482, 518
BstSCI CCNGG 2 cut(s) 480, 516
BstV1I GCAGC 2 cut(s) 280, 516
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 137, 224
BstYI RGATCY 2 cut(s) 137, 224
BsuRI GGCC 4 cut(s) 105, 159, 263, 434
BtsCI GGATG 2 cut(s) 404, 507
BtsIMutI CAGTG 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 43, 118
CaiI CAGNNNCTG 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 432
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 52
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 37
DpnI GATC 4 cut(s) 129, 139, 180, 226
DpnII GATC 4 cut(s) 127, 137, 178, 224
EaeI YGGCCR 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 480, 516
EcoT38I GRGCYC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 282, 523
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 51
FauI CCCGC 2 cut(s) 278, 379
Fnu4HI GCNGC 3 cut(s) 269, 293, 505
FokI GGATG 2 cut(s) 391, 494
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 269, 293, 505
GluI GCNGC 3 cut(s) 269, 293, 505
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 4 cut(s) 105, 159, 263, 434
HgaI GACGC 1 cut(s) 335
Hin1II CATG 1 cut(s) 55
HinfI GANTC 2 cut(s) 4, 71
HphI GGTGA 2 cut(s) 343, 354
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 137, 146, 196
Hpy188III TCNNGA 3 cut(s) 66, 125, 323
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 116, 408
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 102
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 4 cut(s) 127, 137, 178, 224
LmnI GCTCC 2 cut(s) 169, 444
LpnPI CCDG 9 cut(s) 130, 174, 308, 310, 366, 465, 467, 494, 503
Lsp1109I GCAGC 2 cut(s) 280, 516
LweI GCATC 1 cut(s) 516
MalI GATC 4 cut(s) 129, 139, 180, 226
MboI GATC 4 cut(s) 127, 137, 178, 224
MboII GAAGA 1 cut(s) 59
MflI RGATCY 2 cut(s) 137, 224
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 5 cut(s) 152, 242, 318, 436, 499
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 482, 518
MvaI CCWGG 2 cut(s) 482, 518
MwoI GCNNNNNNNGC 2 cut(s) 38, 102
NdeII GATC 4 cut(s) 127, 137, 178, 224
NlaIII CATG 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 270, 294, 506
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 480, 516
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 480, 516
PspPI GGNCC 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 137, 224
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 269, 293, 505
Sau3AI GATC 4 cut(s) 127, 137, 178, 224
Sau96I GGNCC 1 cut(s) 432
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 482, 518
SduI GDGCHC 1 cut(s) 174
SetI ASST 5 cut(s) 43, 94, 174, 213, 310
SfaNI GCATC 1 cut(s) 516
Sse9I AATT 5 cut(s) 152, 242, 318, 436, 499
SsiI CCGC 4 cut(s) 167, 285, 293, 372
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 480, 516
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 331, 465
TasI AATT 5 cut(s) 152, 242, 318, 436, 499
TatI WGTACW 1 cut(s) 251
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 14
TseI GCWGC 2 cut(s) 268, 504
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 14
Tth111I GACNNNGTC 1 cut(s) 74
VspI ATTAAT 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.