Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Forward (+)

2388182 .. 2392722

Gene Structure 4541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAATCACTGTGCGATTCAGCAAGGAAACGCCCTCGCAGCTTGCGACGACATGAGGACCTGTTCCAGAGACTCGGTCGTCTGTCCCAAACCTCGCCGTTTTGGCCTCCTTAACGTTAACCAGAACGATCCCGTCAGATCTCTCCGATGGCATCTCGGCCACCAAGCGGAGCTCTATGATTCGAAAGCAGGGTCTGAAATTTTGGACAACATTCTCTCAAAGGGATCTTTTGGTGTTGAACAATTATTGTGTACAGAAATAGCCTCGCCGCACCCATTTTTCAGCGGGTCACCGCCGAGCAGAAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

6.88

Isoelectric Point (pI)

86.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	4 cut(s)	167, 269, 285, 293
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	2 cut(s)	122, 232
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	3 cut(s)	41, 172, 309
AluI	AGCT	3 cut(s)	41, 172, 309
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	122, 232
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	103, 157
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	2 cut(s)	39, 269
BlsI	GCNGC	2 cut(s)	40, 270
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	105, 159
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	105, 159
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	127, 137, 224
BspACI	CCGC	4 cut(s)	167, 269, 285, 293
BspANI	GGCC	2 cut(s)	105, 159
BspPI	GGATC	2 cut(s)	122, 232
BspT104I	TTCGAA	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	251
BssMI	GATC	3 cut(s)	127, 137, 224
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	130, 140, 227
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	127, 137, 224
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 102, 306
BstPI	GGTNACC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	137, 224
BstYI	RGATCY	2 cut(s)	137, 224
BsuRI	GGCC	2 cut(s)	105, 159
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	41, 105, 159, 172, 263, 309
CviKI_1	RGCY	6 cut(s)	41, 105, 159, 172, 263, 309
CviQI	GTAC	1 cut(s)	252
DpnI	GATC	3 cut(s)	129, 139, 226
DpnII	GATC	3 cut(s)	127, 137, 224
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	55
FaiI	YATR	2 cut(s)	53, 177
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	39, 269
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	39, 269
GluI	GCNGC	2 cut(s)	39, 269
HaeIII	GGCC	2 cut(s)	105, 159
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	4, 16, 71, 179
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	118, 252
Hpy188I	TCNGA	3 cut(s)	137, 146, 196
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	2 cut(s)	118, 252
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 102, 306
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	55
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	127, 137, 224
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	4 cut(s)	73, 79, 134, 174
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	3 cut(s)	129, 139, 226
MboI	GATC	3 cut(s)	127, 137, 224
MflI	RGATCY	2 cut(s)	137, 224
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	198, 242
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	44, 48, 102, 116, 274
MseI	TTAA	2 cut(s)	111, 117
MspA1I	CMGCKG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	38, 102, 306
NdeII	GATC	3 cut(s)	127, 137, 224
NlaIII	CATG	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	4, 16, 179
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	40, 270
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	57
PspPPI	RGGWCCY	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	137, 224
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	111, 117
SatI	GCNGC	2 cut(s)	39, 269
Sau3AI	GATC	3 cut(s)	127, 137, 224
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	43, 62, 94, 117, 174, 311
SfaNI	GCATC	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	2 cut(s)	198, 242
SsiI	CCGC	4 cut(s)	167, 269, 285, 293
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	182
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	2 cut(s)	198, 242
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	4, 16, 179
Tru1I	TTAA	2 cut(s)	111, 117
Tru9I	TTAA	2 cut(s)	111, 117
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	14
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.