AT1G69720

Heme oxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005358
Physical Location & Seq
Forward (+)
26226731 .. 26228580
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69720.2

Sequence Viewer

Length: 858 bp
ATGGCTACAACAAGACTTAACCCCTCTTGCCACTTTCCAGCGAGCACAAGACTCTCTTGCGAGAGCTATCTCGGTCTGAGAACGACCGGGAGGATTAGTTATGCCCGAACCCTAACTGCTCCACGTGGCTATCTTGCTGTAAAAGCAAACGGTGGTCAAGCTTCCGTGGTGACTGCGGCGGCTATAACGGAGAAGCAACAAAAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGATTCGTGGCGATGAGATTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAATCTAGATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAGCCGACTGTGGAAGGATACTTACATTTTCTTGTGGATAGTAAGTTGGTTTACGACACGCTTGAAGGGATCATTGATGGATCCAATTTCCCAACTTATGCTGGTTTCAAGAACACGGGATTAGAAAGAGCAGAGAGTTTGCGGAAAGATTTGGAGTGGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAATGGCTCCTGGTAAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAATGATCCTCAAGCATTCATTTGTCACTTCTACAACATTTACTTTGCTCATAGCGCCGGTGGCCAGATGATTGGAACAAAGGTATCTAAGAAGATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTCTCAGTTGTTGCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTGGTGGACAAGAGAAGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGATTCTTCGACTCATATTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

285

Amino Acids

32.43

Weight (kDa)

7.02

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 115 - 218 5.6e-07 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 176, 179, 478
AclWI GGATC 4 cut(s) 411, 413, 424, 575
AcoI YGGCCR 1 cut(s) 637
AcvI CACGTG 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 401, 445, 499
AjnI CCWGG 2 cut(s) 211, 535
AluBI AGCT 2 cut(s) 66, 161
AluI AGCT 2 cut(s) 66, 161
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 4 cut(s) 411, 413, 424, 575
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 1 cut(s) 637
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 320
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BalI TGGCCA 1 cut(s) 639
BamHI GGATCC 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbrPI CACGTG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 2 cut(s) 213, 537
BciVI GTATCC 2 cut(s) 219, 347
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 2 cut(s) 303, 674
BfoI RGCGCY 1 cut(s) 633
BfuI GTATCC 2 cut(s) 219, 347
BglII AGATCT 1 cut(s) 305
BisI GCNGC 2 cut(s) 177, 180
BlsI GCNGC 2 cut(s) 178, 181
Bme1390I CCNGG 3 cut(s) 88, 213, 537
Bme18I GGWCC 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 3 cut(s) 339, 418, 534
BmrFI CCNGG 3 cut(s) 88, 213, 537
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 790
BseBI CCWGG 2 cut(s) 213, 537
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 4 cut(s) 68, 543, 734, 798
BseRI GAGGAG 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 639
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 3 cut(s) 87, 323, 633
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 1 cut(s) 639
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 5 cut(s) 274, 305, 405, 416, 580
BspACI CCGC 3 cut(s) 176, 179, 478
BspANI GGCC 1 cut(s) 639
BspCNI CTCAG 4 cut(s) 69, 544, 733, 799
BspLI GGNNCC 3 cut(s) 339, 418, 534
BspPI GGATC 4 cut(s) 411, 413, 424, 575
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 5 cut(s) 274, 305, 405, 416, 580
Bst2UI CCWGG 2 cut(s) 213, 537
Bst4CI ACNGT 3 cut(s) 152, 346, 710
Bst6I CTCTTC 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 5 cut(s) 77, 552, 663, 720, 807
BstDSI CCRYGG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 5 cut(s) 277, 308, 408, 419, 583
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 5 cut(s) 274, 305, 405, 416, 580
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 143, 629, 636
BstNI CCWGG 2 cut(s) 213, 537
BstSCI CCNGG 3 cut(s) 86, 211, 535
BstX2I RGATCY 2 cut(s) 305, 416
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 305, 416
BsuI GTATCC 2 cut(s) 219, 347
BsuRI GGCC 1 cut(s) 639
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 632
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 1 cut(s) 320
CviJI RGCY 9 cut(s) 5, 66, 129, 161, 182, 340, 526, 533, 639
CviKI_1 RGCY 9 cut(s) 5, 66, 129, 161, 182, 340, 526, 533, 639
DdeI CTNAG 5 cut(s) 77, 552, 663, 720, 807
DpnI GATC 5 cut(s) 276, 307, 407, 418, 582
DpnII GATC 5 cut(s) 274, 305, 405, 416, 580
DraI TTTAAA 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 320
Eco72I CACGTG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 211, 535
FaiI YATR 9 cut(s) 102, 185, 267, 435, 513, 547, 627, 699, 848
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FaqI GGGAC 1 cut(s) 719
Fnu4HI GCNGC 2 cut(s) 177, 180
Fsp4HI GCNGC 2 cut(s) 177, 180
FspBI CTAG 2 cut(s) 303, 674
GlaI GCGC 1 cut(s) 631
GluI GCNGC 2 cut(s) 177, 180
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 633
HaeIII GGCC 1 cut(s) 639
HapII CCGG 3 cut(s) 87, 323, 633
HhaI GCGC 1 cut(s) 632
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 8 cut(s) 51, 218, 246, 299, 517, 787, 835, 843
HpaII CCGG 3 cut(s) 87, 323, 633
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 388, 713, 771
Hpy188I TCNGA 2 cut(s) 78, 553
Hpy188III TCNNGA 5 cut(s) 303, 311, 445, 521, 855
Hpy8I GTNNAC 3 cut(s) 388, 713, 771
HpyAV CCTTC 4 cut(s) 281, 311, 344, 395
HpyCH4III ACNGT 3 cut(s) 152, 346, 710
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 265, 730, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 629, 636
HpyF3I CTNAG 5 cut(s) 77, 552, 663, 720, 807
HpySE526I ACGT 1 cut(s) 124
HspAI GCGC 1 cut(s) 630
Kzo9I GATC 5 cut(s) 274, 305, 405, 416, 580
LmnI GCTCC 3 cut(s) 124, 337, 538
MaeI CTAG 2 cut(s) 303, 674
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 169, 599
MalI GATC 5 cut(s) 276, 307, 407, 418, 582
MboI GATC 5 cut(s) 274, 305, 405, 416, 580
MboII GAAGA 4 cut(s) 679, 791, 812, 830
MflI RGATCY 2 cut(s) 305, 416
MhlI GDGCHC 1 cut(s) 47
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 3 cut(s) 45, 796, 837
MnlI CCTC 6 cut(s) 34, 84, 229, 307, 594, 732
Mox20I TGGCCA 1 cut(s) 639
MscI TGGCCA 1 cut(s) 639
MseI TTAA 3 cut(s) 18, 560, 819
Msp20I TGGCCA 1 cut(s) 639
MspI CCGG 3 cut(s) 87, 323, 633
MspR9I CCNGG 3 cut(s) 88, 213, 537
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 2 cut(s) 213, 537
MwoI GCNNNNNNNGC 3 cut(s) 143, 629, 636
NciI CCSGG 1 cut(s) 88
NdeII GATC 5 cut(s) 274, 305, 405, 416, 580
NlaIV GGNNCC 3 cut(s) 339, 418, 534
NmuCI GTSAC 2 cut(s) 169, 599
PaeR7I CTCGAG 1 cut(s) 689
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 5 cut(s) 218, 246, 299, 517, 835
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 2 cut(s) 178, 181
PleI GAGTC 3 cut(s) 45, 795, 837
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
PpsI GAGTC 3 cut(s) 45, 795, 837
Ppu21I YACGTR 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 211, 535
PspCI CACGTG 1 cut(s) 125
PspGI CCWGG 2 cut(s) 211, 535
PspN4I GGNNCC 3 cut(s) 339, 418, 534
PspPI GGNCC 1 cut(s) 320
PspXI VCTCGAGB 1 cut(s) 689
PsuI RGATCY 2 cut(s) 305, 416
SaqAI TTAA 3 cut(s) 18, 560, 819
SatI GCNGC 2 cut(s) 177, 180
Sau3AI GATC 5 cut(s) 274, 305, 405, 416, 580
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 3 cut(s) 45, 796, 837
ScrFI CCNGG 3 cut(s) 88, 213, 537
SduI GDGCHC 1 cut(s) 47
SetI ASST 6 cut(s) 68, 127, 163, 322, 511, 660
Sfr274I CTCGAG 1 cut(s) 689
SgrAI CRCCGGYG 1 cut(s) 632
SinI GGWCC 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 585, 689
SmoI CTYRAG 2 cut(s) 585, 689
Sse9I AATT 1 cut(s) 421
SsiI CCGC 3 cut(s) 176, 179, 478
SspMI CTAG 2 cut(s) 303, 674
StyD4I CCNGG 3 cut(s) 86, 211, 535
TaaI ACNGT 3 cut(s) 152, 346, 710
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 690, 841
TaqII GACCGA 1 cut(s) 62
TasI AATT 1 cut(s) 421
TauI GCSGC 2 cut(s) 179, 182
TfiI GAWTC 5 cut(s) 218, 246, 299, 517, 835
Tru1I TTAA 3 cut(s) 18, 560, 819
Tru9I TTAA 3 cut(s) 18, 560, 819
TseFI GTSAC 2 cut(s) 169, 599
Tsp45I GTSAC 2 cut(s) 169, 599
TspDTI ATGAA 1 cut(s) 583
TspGWI ACGGA 2 cut(s) 154, 203
VpaK11BI GGWCC 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 689
XspI CTAG 2 cut(s) 303, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.