Rmu_sc0000039.1_g000009

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000039.1
OG0005358
Physical Location & Seq
Reverse (-)
73755 .. 76745
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000039.1_g000009.1.cds

Sequence Viewer

Length: 390 bp
atgtatagcaatttcaagaaggctattacccagatattcatcgagtacttgcgccacgctatggagattcttattgttttggatgacggcgggcccggcctggcctccaacggcgagtggcagtctagtggatctccaagtctcttgcaactttatgtggatgctgagtttagagatactggattgaaaaggtctgaaaagttggcaaaagatttggagtggttcaaggagcaaatccatgccataccagagccttttgctcctggtgtaaactatgctcagtatcttaaggaactatcggagaaggatcgtcaagcatttttctgccacttctacaatatatacttcactcattcagctggtggacgaatgattgggaaaaaggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

129

Amino Acids

14.8

Weight (kDa)

6.41

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 1 cut(s) 90
AclWI GGATC 2 cut(s) 139, 315
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 16, 187, 226
AjnI CCWGG 2 cut(s) 99, 262
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 139, 315
AoxI GGCC 3 cut(s) 92, 97, 102
ApaI GGGCCC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 92, 93
AsuC2I CCSGG 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 103, 127
BciT130I CCWGG 2 cut(s) 101, 264
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 96, 101, 264
BmgT120I GGNCC 2 cut(s) 92, 93
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 96, 101, 264
BmsI GCATC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 101, 264
BseGI GGATG 2 cut(s) 88, 166
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 156, 293
BseNI ACTGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 96
BshFI GGCC 3 cut(s) 94, 99, 104
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 3 cut(s) 94, 99, 104
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 131, 307
BspACI CCGC 1 cut(s) 90
BspANI GGCC 3 cut(s) 94, 99, 104
BspCNI CTCAG 2 cut(s) 157, 292
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 139, 315
BspTI CTTAAG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 184
BssMI GATC 2 cut(s) 131, 307
Bst2UI CCWGG 2 cut(s) 101, 264
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 165, 279
BstF5I GGATG 2 cut(s) 88, 166
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 134, 310
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 131, 307
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 101, 264
BstSCI CCNGG 3 cut(s) 94, 99, 262
BstSLI GKGCMC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 3 cut(s) 94, 99, 104
BtsCI GGATG 2 cut(s) 88, 166
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 92, 93
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 239
CviJI RGCY 6 cut(s) 23, 94, 99, 104, 253, 359
CviKI_1 RGCY 6 cut(s) 23, 94, 99, 104, 253, 359
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 165, 279
DpnI GATC 2 cut(s) 133, 309
DpnII GATC 2 cut(s) 131, 307
Eco24I GRGCYC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 99, 262
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 242
FaiI YATR 9 cut(s) 6, 62, 156, 240, 245, 276, 341, 343, 388
FatI CATG 1 cut(s) 238
FauI CCCGC 1 cut(s) 83
FokI GGATG 2 cut(s) 95, 173
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 53
HaeIII GGCC 3 cut(s) 94, 99, 104
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 271, 365
Hpy188I TCNGA 2 cut(s) 196, 301
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 271, 365
HpyAV CCTTC 2 cut(s) 13, 298
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 165, 279
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 131, 307
LmnI GCTCC 2 cut(s) 229, 265
LpnPI CCDG 9 cut(s) 44, 86, 109, 113, 165, 249, 261, 276, 345
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 126
MalI GATC 2 cut(s) 133, 309
MboI GATC 2 cut(s) 131, 307
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 1 cut(s) 115
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 3 cut(s) 96, 101, 264
MvaI CCWGG 2 cut(s) 101, 264
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 96
NdeII GATC 2 cut(s) 131, 307
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 99, 262
PspGI CCWGG 2 cut(s) 99, 262
PspN4I GGNNCC 1 cut(s) 94
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 92, 93
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 2 cut(s) 131, 307
Sau96I GGNCC 2 cut(s) 92, 93
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 3 cut(s) 96, 101, 264
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 194, 361, 387
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 94, 99, 262
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 287
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.