pycom02g02620

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005358
Physical Location & Seq
Forward (+)
1646966 .. 1649246
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02620.1

Sequence Viewer

Length: 861 bp
ATGGCTTCTTTAACACCGGTTTCGCAATCCCAATTGCTTTTCAACAAAACCCAGTTCAAGTTACCACCAAATTTGAGGTCCGGTTTATTGCTGAACAAGTTCTCTGTTTCGTTCCGGAGGATGAGTTTCAGAGTGCCCACGAAGGCGGCGGCGGCGGCGGCGACGTCCGGGGTGGTTTCCGCTACCACGGCGGAGAAGGCGAAGAAGAGGTACCCGGGGGAGGCGAAGGGGTTCGTGGAGGAGATGAGGTTTGTGGCGATGAAGTTGCACACCAGGGACCAGGCGAAGGAGGGGGAGAAGGAGGTGAAGGAGCCGCAGGAGGGGCCGGTGGCTAAGTGGGAGCCAACAGTCGATGGGTATTTGAAGTTTTTGGTGGATAGCAAGTTGGTTTATGATACCCTTGAAGAGATTGTTGAAAAATCTCCATTTCCTTCTTACGCGGAGTTCAGAAATACTGGATTGGAAAGGTCCGAAAAGTTGGCAAAAGATTTGGAGTGGTTTAAGGAGCAAGGTTATGCCATACCAGAACCTTCTACTCCTGGTGTTACCTACGCGGAGTATCTTAAGGAACTGTCGGAGAAGGATCCTCAAGCATTTATATGCCACTTCTACAATATATACTTCGCTCATTCAGCTGGCGGGCGAATGATTGGGAAAAAGGTGGCGGAAATGATACTAGACAAAAAGGACCTGGAATTCTACAAATGGGACGGCGAGCTTTCCCAACTGCTGCAGAATGTGAGGGAGAAGTTGAATAAAGTTGCCGAGAGCTGGACGAGGGAGGAGAAGAACCACTGCTTGGAAGAAACCGAGAAATCGTTCAAACATTCGGGAGAGATTCTGCGTCTCATATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

287

Amino Acids

32.65

Weight (kDa)

8.28

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 97 - 280 7.4e-14 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 799
AccII CGCG 2 cut(s) 440, 554
AccIII TCCGGA 1 cut(s) 114
AclWI GGATC 2 cut(s) 578, 591
AcsI RAATTY 2 cut(s) 70, 695
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 5 cut(s) 220, 286, 320, 771, 799
AflII CTTAAG 1 cut(s) 563
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 7 cut(s) 43, 58, 364, 404, 416, 754, 823
AjnI CCWGG 4 cut(s) 272, 279, 538, 690
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AluBI AGCT 3 cut(s) 635, 718, 771
AluI AGCT 3 cut(s) 635, 718, 771
Alw26I GTCTC 1 cut(s) 851
AlwI GGATC 2 cut(s) 578, 591
Ama87I CYCGRG 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 2 cut(s) 70, 695
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AsiGI ACCGGT 1 cut(s) 16
Asp700I GAANNNNTTC 3 cut(s) 98, 230, 818
Asp718I GGTACC 1 cut(s) 210
AspS9I GGNCC 5 cut(s) 78, 277, 323, 468, 688
AsuC2I CCSGG 3 cut(s) 169, 215, 216
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 4 cut(s) 78, 277, 468, 688
BaeGI GKGCMC 1 cut(s) 138
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbvI GCAGC 1 cut(s) 717
BccI CCATC 1 cut(s) 347
BceAI ACGGC 2 cut(s) 204, 727
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 4 cut(s) 274, 281, 540, 692
BcnI CCSGG 3 cut(s) 169, 215, 216
BcoDI GTCTC 1 cut(s) 851
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 731
BfrI CTTAAG 1 cut(s) 563
BisI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 314, 731
BlsI GCNGC 7 cut(s) 148, 151, 154, 157, 160, 315, 732
Bme1390I CCNGG 7 cut(s) 169, 215, 216, 274, 281, 540, 692
Bme18I GGWCC 4 cut(s) 78, 277, 468, 688
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 5 cut(s) 78, 277, 323, 468, 688
BmiI GGNNCC 6 cut(s) 212, 278, 312, 324, 342, 585
BmrFI CCNGG 7 cut(s) 169, 215, 216, 274, 281, 540, 692
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 573
BpuMI CCSGG 3 cut(s) 169, 215, 216
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 5 cut(s) 168, 186, 214, 215, 273
BsaWI WCCGGW 3 cut(s) 16, 80, 114
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 233, 263
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 286, 320, 771, 799
Bse118I RCCGGY 2 cut(s) 16, 325
Bse1I ACTGG 2 cut(s) 52, 460
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 4 cut(s) 274, 281, 540, 692
BseDI CCNNGG 5 cut(s) 168, 186, 214, 215, 273
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 220, 286, 320, 771, 799
BseNI ACTGG 2 cut(s) 52, 460
BseRI GAGGAG 2 cut(s) 254, 797
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 717
Bsh1236I CGCG 2 cut(s) 440, 554
BshFI GGCC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 210
BshTI ACCGGT 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 6 cut(s) 17, 81, 115, 168, 215, 326
BslFI GGGAC 2 cut(s) 290, 722
BslI CCNNNNNNNGG 5 cut(s) 220, 286, 320, 771, 799
BsmAI GTCTC 1 cut(s) 851
BsmBI CGTCTC 1 cut(s) 851
BsmFI GGGAC 2 cut(s) 290, 722
BsnI GGCC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 1 cut(s) 583
BspANI GGCC 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 2 cut(s) 440, 554
BspHI TCATGA 1 cut(s) 857
BspLI GGNNCC 6 cut(s) 212, 278, 312, 324, 342, 585
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 2 cut(s) 578, 591
BspT107I GGYRCC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 563
BsrFI RCCGGY 2 cut(s) 16, 325
BsrI ACTGG 2 cut(s) 52, 460
BssAI RCCGGY 2 cut(s) 16, 325
BssECI CCNNGG 5 cut(s) 168, 186, 214, 215, 273
BssMI GATC 1 cut(s) 583
BssNI GRCGYC 1 cut(s) 164
Bst2UI CCWGG 4 cut(s) 274, 281, 540, 692
Bst4CI ACNGT 2 cut(s) 349, 573
Bst6I CTCTTC 2 cut(s) 200, 399
BstACI GRCGYC 1 cut(s) 164
BstAFI CTTAAG 1 cut(s) 563
BstC8I GCNNGC 3 cut(s) 637, 641, 716
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 2 cut(s) 440, 554
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 7 cut(s) 152, 155, 158, 188, 197, 322, 632
BstNI CCWGG 4 cut(s) 274, 281, 540, 692
BstSCI CCNGG 7 cut(s) 167, 213, 214, 272, 279, 538, 690
BstSFI CTRYAG 1 cut(s) 731
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 2 cut(s) 440, 554
BstV1I GCAGC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 793
Cac8I GCNNGC 3 cut(s) 637, 641, 716
CciI TCATGA 1 cut(s) 857
Cfr10I RCCGGY 2 cut(s) 16, 325
Cfr13I GGNCC 5 cut(s) 78, 277, 323, 468, 688
Cfr9I CCCGGG 1 cut(s) 214
CseI GACGC 1 cut(s) 833
Csp6I GTAC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 16
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 1 cut(s) 858
CviJI RGCY 8 cut(s) 5, 313, 325, 332, 343, 635, 718, 771
CviKI_1 RGCY 8 cut(s) 5, 313, 325, 332, 343, 635, 718, 771
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 200, 399
EarI CTCTTC 2 cut(s) 200, 399
EciI GGCGGA 2 cut(s) 206, 680
Eco47I GGWCC 4 cut(s) 78, 277, 468, 688
Eco88I CYCGRG 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 4 cut(s) 272, 279, 538, 690
Esp3I CGTCTC 1 cut(s) 851
FaeI CATG 1 cut(s) 861
FaiI YATR 9 cut(s) 393, 516, 521, 599, 601, 617, 619, 851, 859
FaqI GGGAC 2 cut(s) 290, 722
FatI CATG 1 cut(s) 857
FauI CCCGC 1 cut(s) 632
Fnu4HI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 314, 731
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 314, 731
FspBI CTAG 1 cut(s) 677
GluI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 314, 731
HaeIII GGCC 1 cut(s) 325
HapII CCGG 6 cut(s) 17, 81, 115, 168, 215, 326
HgaI GACGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 1 cut(s) 861
HinfI GANTC 1 cut(s) 838
HpaII CCGG 6 cut(s) 17, 81, 115, 168, 215, 326
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 131, 449, 472, 577
Hpy188III TCNNGA 3 cut(s) 115, 831, 858
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 9 cut(s) 136, 190, 220, 280, 292, 301, 441, 540, 574
HpyCH4III ACNGT 2 cut(s) 349, 573
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 268, 733
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 155, 158, 188, 197, 322, 632
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 861
Kpn2I TCCGGA 1 cut(s) 114
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 3 cut(s) 310, 340, 505
Lsp1109I GCAGC 1 cut(s) 717
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 60, 544
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 5 cut(s) 214, 217, 416, 799, 815
MfeI CAATTG 1 cut(s) 32
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 32, 70, 695
MmeI TCCRAC 1 cut(s) 555
MroI TCCGGA 1 cut(s) 114
MroXI GAANNNNTTC 3 cut(s) 98, 230, 818
MseI TTAA 3 cut(s) 11, 501, 564
MslI CAYNNNNRTG 1 cut(s) 598
MspA1I CMGCKG 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 6 cut(s) 17, 81, 115, 168, 215, 326
MspR9I CCNGG 7 cut(s) 169, 215, 216, 274, 281, 540, 692
MunI CAATTG 1 cut(s) 32
MvaI CCWGG 4 cut(s) 274, 281, 540, 692
MvnI CGCG 2 cut(s) 440, 554
MwoI GCNNNNNNNGC 7 cut(s) 152, 155, 158, 188, 197, 322, 632
NciI CCSGG 3 cut(s) 169, 215, 216
NdeII GATC 1 cut(s) 583
NlaIII CATG 1 cut(s) 861
NlaIV GGNNCC 6 cut(s) 212, 278, 312, 324, 342, 585
NmeAIII GCCGAG 1 cut(s) 790
PagI TCATGA 1 cut(s) 857
PdmI GAANNNNTTC 3 cut(s) 98, 230, 818
PfeI GAWTC 1 cut(s) 838
PflMI CCANNNNNTGG 1 cut(s) 799
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 7 cut(s) 148, 151, 154, 157, 160, 315, 732
PpuMI RGGWCCY 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 4 cut(s) 272, 279, 538, 690
PspGI CCWGG 4 cut(s) 272, 279, 538, 690
PspN4I GGNNCC 6 cut(s) 212, 278, 312, 324, 342, 585
PspPI GGNCC 5 cut(s) 78, 277, 323, 468, 688
PspPPI RGGWCCY 1 cut(s) 688
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 598
SaqAI TTAA 3 cut(s) 11, 501, 564
SatI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 314, 731
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 5 cut(s) 78, 277, 323, 468, 688
ScrFI CCNGG 7 cut(s) 169, 215, 216, 274, 281, 540, 692
SduI GDGCHC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 731
SinI GGWCC 4 cut(s) 78, 277, 468, 688
SmaI CCCGGG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 598
SmlI CTYRAG 2 cut(s) 563, 588
SmoI CTYRAG 2 cut(s) 563, 588
Sse9I AATT 3 cut(s) 32, 70, 695
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 7 cut(s) 167, 213, 214, 272, 279, 538, 690
TaaI ACNGT 2 cut(s) 349, 573
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 351
TasI AATT 3 cut(s) 32, 70, 695
TauI GCSGC 6 cut(s) 149, 152, 155, 158, 161, 316
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 3 cut(s) 11, 501, 564
Tru9I TTAA 3 cut(s) 11, 501, 564
TscAI CASTG 1 cut(s) 800
TseI GCWGC 1 cut(s) 730
TspDTI ATGAA 1 cut(s) 275
TspMI CCCGGG 1 cut(s) 214
TspRI CASTG 1 cut(s) 800
Van91I CCANNNNNTGG 1 cut(s) 799
Vha464I CTTAAG 1 cut(s) 563
VpaK11BI GGWCC 4 cut(s) 78, 277, 468, 688
XapI RAATTY 2 cut(s) 70, 695
XmaI CCCGGG 1 cut(s) 214
XmnI GAANNNNTTC 3 cut(s) 98, 230, 818
XspI CTAG 1 cut(s) 677
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.