AT2G26670

Heme oxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005358
Physical Location & Seq
Forward (+)
11341548 .. 11343693
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26670.1

Sequence Viewer

Length: 849 bp
ATGGCGTATTTAGCTCCGATTTCTTCATCCTTATCCATATTCAAGAATCCCCAACTCTCAAGATTCCAATTTTCTTCTTCCTCACCGAACCCACTTTTCCTTCGACCTAGGATTCAGATTCTGAGTATGACCATGAACAAGTCGCCGTCTTTAGTGGTGGTTGCGGCTACTACTGCGGCAGAGAAGCAGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCTATGAGACTTCATACTAAAGATCAAGCTAAGGAAGGTGAGAAAGAGACTAAATCTATTGAGGAACGTCCTGTTGCTAAATGGGAACCTACTGTTGAAGGTTACTTGAGGTTTCTTGTGGATAGTAAATTGGTTTATGATACTCTTGAACTGATTATTCAAGACTCCAATTTCCCAACTTATGCCGAGTTCAAGAACACGGGGCTGGAAAGAGCGGAGAAATTATCCACGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGTAAAACATATTCTCAATATTTAAAGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATCTACTTTGCTCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTGGCAGAGCGGATACTCGATAATAAAGAACTCGAGTTCTACAAATGGGACGGCGAACTTTCTCAATTGTTGCAGAACGTTAGGGAGAAACTGAACAAGGTTGCAGAGGAGTGGACTAGAGAAGAAAAGAATCATTGTTTGGAAGAGACTGAGAAATCGTTCAAGTATTCTGGTGAGATACTTCGTCTCATATTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

282

Amino Acids

32.69

Weight (kDa)

6.5

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 111 - 277 2.9e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 458, 658
AciI CCGC 4 cut(s) 164, 176, 458, 658
AclI AACGTT 1 cut(s) 726
AclWI GGATC 2 cut(s) 566, 579
AgsI TTSAA 7 cut(s) 43, 341, 392, 404, 436, 490, 811
AjnI CCWGG 2 cut(s) 202, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 3 cut(s) 14, 272, 524
AluI AGCT 3 cut(s) 14, 272, 524
Alw26I GTCTC 4 cut(s) 244, 284, 788, 839
AlwI GGATC 2 cut(s) 566, 579
AlwNI CAGNNNCTG 2 cut(s) 121, 527
Ama87I CYCGRG 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 806
AspA2I CCTAGG 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 75, 293, 833
AvaI CYCGRG 1 cut(s) 680
AvrII CCTAGG 1 cut(s) 107
BamHI GGATCC 1 cut(s) 571
BceAI ACGGC 2 cut(s) 130, 715
BciT130I CCWGG 2 cut(s) 204, 528
BciVI GTATCC 2 cut(s) 210, 654
BcoDI GTCTC 4 cut(s) 244, 284, 788, 839
BfaI CTAG 2 cut(s) 108, 765
BfuI GTATCC 2 cut(s) 210, 654
BisI GCNGC 2 cut(s) 165, 177
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 2 cut(s) 166, 178
Bme1390I CCNGG 2 cut(s) 204, 528
BmeT110I CYCGRG 1 cut(s) 680
BmiI GGNNCC 2 cut(s) 330, 573
BmrFI CCNGG 2 cut(s) 204, 528
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 43, 370, 561
BsaJI CCNNGG 2 cut(s) 107, 471
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
BseBI CCWGG 2 cut(s) 204, 528
BseDI CCNNGG 2 cut(s) 107, 471
BseGI GGATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 113, 789
BseRI GAGGAG 2 cut(s) 242, 770
BsiHKCI CYCGRG 1 cut(s) 680
BslFI GGGAC 1 cut(s) 710
BsmAI GTCTC 4 cut(s) 244, 284, 788, 839
BsmBI CGTCTC 1 cut(s) 839
BsmFI GGGAC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 680
Bsp143I GATC 2 cut(s) 265, 571
BspACI CCGC 4 cut(s) 164, 176, 458, 658
BspCNI CTCAG 2 cut(s) 114, 790
BspLI GGNNCC 2 cut(s) 330, 573
BspPI GGATC 2 cut(s) 566, 579
BsrBI CCGCTC 2 cut(s) 458, 658
BssECI CCNNGG 2 cut(s) 107, 471
BssMI GATC 2 cut(s) 265, 571
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 204, 528
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 188, 786
BstDEI CTNAG 3 cut(s) 122, 273, 798
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 2 cut(s) 268, 574
BstMAI GTCTC 4 cut(s) 244, 284, 788, 839
BstMBI GATC 2 cut(s) 265, 571
BstMWI GCNNNNNNNGC 3 cut(s) 11, 173, 620
BstNI CCWGG 2 cut(s) 204, 528
BstSCI CCNGG 2 cut(s) 202, 526
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 571
BsuI GTATCC 2 cut(s) 210, 654
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 26
CaiI CAGNNNCTG 2 cut(s) 121, 527
CviAII CATG 1 cut(s) 133
CviJI RGCY 6 cut(s) 14, 167, 245, 272, 448, 524
CviKI_1 RGCY 6 cut(s) 14, 167, 245, 272, 448, 524
DdeI CTNAG 3 cut(s) 122, 273, 798
DpnI GATC 2 cut(s) 267, 573
DpnII GATC 2 cut(s) 265, 571
DraI TTTAAA 1 cut(s) 552
Eam1104I CTCTTC 2 cut(s) 188, 786
EarI CTCTTC 2 cut(s) 188, 786
Eco130I CCWWGG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 202, 526
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 839
FaeI CATG 1 cut(s) 136
FaqI GGGAC 1 cut(s) 710
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 165, 177
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 165, 177
FspBI CTAG 2 cut(s) 108, 765
GluI GCNGC 2 cut(s) 165, 177
GsuI CTGGAG 1 cut(s) 225
Hin1II CATG 1 cut(s) 136
HinfI GANTC 8 cut(s) 46, 63, 112, 118, 209, 407, 508, 778
HphI GGTGA 3 cut(s) 75, 293, 833
Hpy166II GTNNAC 2 cut(s) 629, 762
Hpy188I TCNGA 3 cut(s) 18, 117, 123
Hpy188III TCNNGA 7 cut(s) 43, 60, 389, 404, 436, 512, 846
Hpy8I GTNNAC 2 cut(s) 629, 762
HpyAV CCTTC 4 cut(s) 110, 272, 335, 562
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 310, 726
HpyCH4V TGCA 2 cut(s) 721, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 173, 620
HpyF3I CTNAG 3 cut(s) 122, 273, 798
HpySE526I ACGT 2 cut(s) 310, 726
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 265, 571
LmnI GCTCC 2 cut(s) 19, 529
LpnPI CCDG 9 cut(s) 189, 216, 327, 434, 513, 525, 540, 609, 804
MaeI CTAG 2 cut(s) 108, 765
MaeII ACGT 2 cut(s) 310, 726
MaeIII GTNAC 3 cut(s) 344, 500, 590
MalI GATC 2 cut(s) 267, 573
MbiI CCGCTC 2 cut(s) 458, 658
MboI GATC 2 cut(s) 265, 571
MboII GAAGA 7 cut(s) 15, 66, 69, 202, 205, 782, 803
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 571
MluCI AATT 6 cut(s) 68, 371, 412, 464, 557, 713
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 8 cut(s) 91, 189, 220, 228, 298, 345, 585, 748
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 204, 528
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 204, 528
MwoI GCNNNNNNNGC 3 cut(s) 11, 173, 620
NdeII GATC 2 cut(s) 265, 571
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 330, 573
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 680
PctI GAATGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 7 cut(s) 46, 63, 112, 118, 209, 508, 778
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 166, 178
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp1406I AACGTT 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 202, 526
PspGI CCWGG 2 cut(s) 202, 526
PspN4I GGNNCC 2 cut(s) 330, 573
PspXI VCTCGAGB 1 cut(s) 680
PstNI CAGNNNCTG 2 cut(s) 121, 527
PsuI RGATCY 1 cut(s) 571
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 165, 177
Sau3AI GATC 2 cut(s) 265, 571
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 204, 528
Sfr274I CTCGAG 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 680
SmlI CTYRAG 4 cut(s) 58, 349, 576, 680
SmoI CTYRAG 4 cut(s) 58, 349, 576, 680
Sse9I AATT 6 cut(s) 68, 371, 412, 464, 557, 713
SsiI CCGC 4 cut(s) 164, 176, 458, 658
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 108, 765
StyD4I CCNGG 2 cut(s) 202, 526
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 313, 729
TaqI TCGA 3 cut(s) 103, 666, 681
TasI AATT 6 cut(s) 68, 371, 412, 464, 557, 713
TauI GCSGC 2 cut(s) 167, 179
TfiI GAWTC 7 cut(s) 46, 63, 112, 118, 209, 508, 778
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 4 cut(s) 15, 149, 245, 574
TspGWI ACGGA 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 680
XmaJI CCTAGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 2 cut(s) 108, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.