RLG00000015948

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005358
Physical Location & Seq
Forward (+)
2715930 .. 2717818
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015948

Sequence Viewer

Length: 840 bp
ATGGCTTCTTTAACCCCAATTTCGCAATCCCAGTCCCTTTTTAACAAGACCCAGTTCCTCACTAACCCCAATTTAGGGTCTGATTTTTTGCCCAAGAAATTCTCCGTTTGGTTTCCCAAGATGACTACTAGGTTTCCCATGAAGGCGGCTGTTGTGTCGGCGACGACGGCGGAGATGCCGAAGAAGAGGTACCCCGGAGAGGCAAAAGGGTTTGTGGAGGAGATGAGGTTTGTGGCAATGAAGTTGCATACTAGGGACCAGGCTAAGGAGGGTGAGAAGGAGGTGAAGGAGCCTCAGGAGAGGCCGGTGGCCAAGTGGGACCCGACGCTTGAAGGGTACTTGAGGTTTCTTGTGGATAGCAAGTTGGTGTATGACACCCTTGAGGCGATTGTCGACAAGGCTCCCTTCCCTTCTTATGCTGAGTTTAGAGATACTGGATTGGAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGGCCATGCCATACCAGAACCTTCTGCTCCTGGTGTAACCTATGCTGAGTATCTTAAGGAGCTGTCGGAGAAGGATCCTCAAGCATTTCTCTGCCACTTCTACAATATATACTTTGCTCATTCAGCTGGTGGACGAATGATTGGGAAAAAGGTGGCTGAAATGATCCTCGACAAGAAAGATTTGGAATTCTATAAATGGGATGGTGAACTTTCCCAATTGTTGCAGAATGTGAGGGAGAAATTGAACAAAGTTGCAGAGAGCTGGACGAGGGAGGAGAAGAACCATTGCTTGGAAGAAACAGAGAAATCATTCAAACATTCAGGGGAAATTCTCCGTCTAATATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

280

Amino Acids

32.17

Weight (kDa)

6.63

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 110 - 273 3.4e-13 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 778
AccI GTMKAC 1 cut(s) 393
AciI CCGC 2 cut(s) 146, 170
AclWI GGATC 3 cut(s) 557, 570, 646
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 3 cut(s) 98, 674, 816
AfaI GTAC 2 cut(s) 191, 338
AfiI CCNNNNNNNGG 5 cut(s) 74, 75, 199, 265, 778
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 332, 481, 733, 802
AjnI CCWGG 2 cut(s) 258, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 3 cut(s) 550, 614, 750
AluI AGCT 3 cut(s) 550, 614, 750
AlwI GGATC 3 cut(s) 557, 570, 646
AoxI GGCC 3 cut(s) 302, 309, 490
ApoI RAATTY 3 cut(s) 98, 674, 816
Asp700I GAANNNNTTC 1 cut(s) 797
Asp718I GGTACC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 256, 319
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 284, 295, 704
AvaII GGWCC 2 cut(s) 256, 319
AxyI CCTNAGG 1 cut(s) 294
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BccI CCATC 1 cut(s) 683
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 260, 519
BcnI CCSGG 1 cut(s) 195
BfaI CTAG 2 cut(s) 129, 252
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 3 cut(s) 195, 260, 519
Bme18I GGWCC 2 cut(s) 256, 319
BmgT120I GGNCC 2 cut(s) 256, 319
BmiI GGNNCC 7 cut(s) 191, 257, 291, 320, 321, 402, 564
BmrFI CCNGG 3 cut(s) 195, 260, 519
BmrI ACTGGG 2 cut(s) 25, 46
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 2 cut(s) 25, 46
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 3 cut(s) 361, 401, 552
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 75, 199, 265, 778
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 31, 52, 439
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 243, 772
BseBI CCWGG 2 cut(s) 260, 519
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 5 cut(s) 74, 75, 199, 265, 778
BseMI GCAATG 2 cut(s) 243, 772
BseMII CTCAG 3 cut(s) 308, 411, 525
BseNI ACTGG 3 cut(s) 31, 52, 439
BseRI GAGGAG 2 cut(s) 233, 776
BshFI GGCC 3 cut(s) 304, 311, 492
BshNI GGYRCC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 195, 305
BslFI GGGAC 3 cut(s) 19, 269, 332
BslI CCNNNNNNNGG 5 cut(s) 74, 75, 199, 265, 778
BsmFI GGGAC 3 cut(s) 19, 269, 332
BsnI GGCC 3 cut(s) 304, 311, 492
Bsp143I GATC 2 cut(s) 562, 651
BspACI CCGC 2 cut(s) 146, 170
BspANI GGCC 3 cut(s) 304, 311, 492
BspCNI CTCAG 3 cut(s) 307, 412, 526
BspHI TCATGA 1 cut(s) 836
BspLI GGNNCC 7 cut(s) 191, 257, 291, 320, 321, 402, 564
BspPI GGATC 3 cut(s) 557, 570, 646
BspT107I GGYRCC 1 cut(s) 189
BspTI CTTAAG 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 243, 772
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 3 cut(s) 31, 52, 439
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 562, 651
Bst2UI CCWGG 2 cut(s) 260, 519
Bst6I CTCTTC 1 cut(s) 179
BstAFI CTTAAG 1 cut(s) 542
BstDEI CTNAG 4 cut(s) 264, 294, 420, 534
BstF5I GGATG 1 cut(s) 694
BstKTI GATC 2 cut(s) 565, 654
BstMBI GATC 2 cut(s) 562, 651
BstMWI GCNNNNNNNGC 2 cut(s) 167, 611
BstNI CCWGG 2 cut(s) 260, 519
BstSCI CCNGG 3 cut(s) 193, 258, 517
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 304, 311, 492
BtsCI GGATG 1 cut(s) 694
CciI TCATGA 1 cut(s) 836
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 256, 319
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 190, 337
CviAII CATG 3 cut(s) 139, 494, 837
CviQI GTAC 2 cut(s) 190, 337
DdeI CTNAG 4 cut(s) 264, 294, 420, 534
DpnI GATC 2 cut(s) 564, 653
DpnII GATC 2 cut(s) 562, 651
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 256, 319
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 258, 517
FaeI CATG 3 cut(s) 142, 497, 840
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 3 cut(s) 19, 269, 332
FatI CATG 3 cut(s) 138, 493, 836
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 129, 252
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 3 cut(s) 304, 311, 492
HapII CCGG 2 cut(s) 195, 305
HgaI GACGC 1 cut(s) 334
Hin1II CATG 3 cut(s) 142, 497, 840
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 195, 305
HphI GGTGA 3 cut(s) 284, 295, 704
Hpy166II GTNNAC 3 cut(s) 394, 620, 695
Hpy188I TCNGA 3 cut(s) 82, 451, 556
Hpy188III TCNNGA 2 cut(s) 296, 837
Hpy8I GTNNAC 3 cut(s) 394, 620, 695
Hpy99I CGWCG 3 cut(s) 166, 169, 328
HpyAV CCTTC 8 cut(s) 136, 271, 280, 326, 415, 420, 519, 553
HpyCH4V TGCA 3 cut(s) 247, 712, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 611
HpyF3I CTNAG 4 cut(s) 264, 294, 420, 534
Hsp92II CATG 3 cut(s) 142, 497, 840
KflI GGGWCCC 1 cut(s) 319
KpnI GGTACC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 562, 651
LmnI GCTCC 5 cut(s) 289, 406, 484, 520, 547
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 129, 252
MaeIII GTNAC 1 cut(s) 523
MalI GATC 2 cut(s) 564, 653
MboI GATC 2 cut(s) 562, 651
MboII GAAGA 4 cut(s) 193, 196, 778, 794
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 1 cut(s) 562
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 7 cut(s) 18, 70, 98, 674, 704, 728, 816
MluNI TGGCCA 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 534
Mox20I TGGCCA 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 797
MscI TGGCCA 1 cut(s) 311
MseI TTAA 3 cut(s) 11, 42, 543
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 614
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 2 cut(s) 195, 305
MspR9I CCNGG 3 cut(s) 195, 260, 519
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 2 cut(s) 260, 519
MwoI GCNNNNNNNGC 2 cut(s) 167, 611
NciI CCSGG 1 cut(s) 195
NdeII GATC 2 cut(s) 562, 651
NlaIII CATG 3 cut(s) 142, 497, 840
NlaIV GGNNCC 7 cut(s) 191, 257, 291, 320, 321, 402, 564
PagI TCATGA 1 cut(s) 836
PdmI GAANNNNTTC 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 258, 517
PspGI CCWGG 2 cut(s) 258, 517
PspN4I GGNNCC 7 cut(s) 191, 257, 291, 320, 321, 402, 564
PspPI GGNCC 2 cut(s) 256, 319
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 191, 338
RsaNI GTAC 2 cut(s) 190, 337
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 3 cut(s) 11, 42, 543
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 562, 651
Sau96I GGNCC 2 cut(s) 256, 319
ScrFI CCNGG 3 cut(s) 195, 260, 519
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 2 cut(s) 256, 319
SmlI CTYRAG 4 cut(s) 340, 380, 542, 567
SmoI CTYRAG 4 cut(s) 340, 380, 542, 567
Sse9I AATT 7 cut(s) 18, 70, 98, 674, 704, 728, 816
SsiI CCGC 2 cut(s) 146, 170
SspI AATATT 1 cut(s) 831
SspMI CTAG 2 cut(s) 129, 252
StyD4I CCNGG 3 cut(s) 193, 258, 517
TaqI TCGA 2 cut(s) 393, 657
TasI AATT 7 cut(s) 18, 70, 98, 674, 704, 728, 816
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 11, 42, 543
Tru9I TTAA 3 cut(s) 11, 42, 543
TspDTI ATGAA 2 cut(s) 155, 254
TspGWI ACGGA 2 cut(s) 94, 812
Van91I CCANNNNNTGG 1 cut(s) 778
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 256, 319
XapI RAATTY 3 cut(s) 98, 674, 816
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 2 cut(s) 129, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.