Rorug01G0483700

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005358
Physical Location & Seq
Reverse (-)
57072199 .. 57073440
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0483700.1

Sequence Viewer

Length: 1221 bp
ATGGATATTGCTGCTGTTACCCTCACAAAAAGTTACTCATCAGAATGGGCAACTCTCCCTGAACTACCTCTCTCCTTGGTTCTTGATAATTTGTTTGAACCAATTGACCATGTCCGTTTTGGCGTTGTTTGCAAGCAATGGCATTCTTTTGCAACAACCTATCTTCAAACAAATCAACGCAACCAGAAGCTACTTCCGTTGCTTATAATCCCACCACCACCTAAATCCGTATCTAAATCCGATGATCATTCCCGAGCAAAGACCCGAACAAGTCAAGTATACAGCATTTCCGAGGCAAAAGTATACAACAACATTCACTTATCACTTCCTTACTATACGAAAAGGTGTTGCGGCTCGTCCCATGGTTGGCTAGCCACAGTAGATAAGCATCTTGCTATTACTCTCCATAACCCTTTCCAAAACACAGCCGAGCCCATTCGTCTCCCTCCTTTGGATTTCGTCACTGTCCGAAAGAAACATAAATCTCTCTATGAATATTACGTCTCAAAAGTTGTTCTGTCAGCCGATCCTATTCTAAATCCCGATGACTATGTGGTTGCGGTACTCTGTGATGTTATTGCCAAGTTGGCTTTCATAAAAAAAGGCCAAACAAGTTGGACTCACATCACCACTCCTGAAGACCTTTACTTGAATGATGTCGTGTTTCATAGAGGTAAAATATACGCAGTCGGAAATATGGGATTCATGTTTGTCATGGACTTTAAAAGCAATAAAGCAAGACCGGAAGTAAGGAGACTTGAACCTAGTGAACGGTTCCTGTTTTATGCAGTTCGTGATTATCTTGTGGAATCAACAAAGGGAGACCTATTTCATGCCCGAAGGATAAGATTATATGGTATTGGTATCGATTCCCACACTCTCGAGACCTTTGAAGTCTGCAGGTTGGTGTTTGACGAAGAGAATGATATCGTAGAACATGTTAGGGTAAGGAGCATTGGAGATGAGGCTTTCTTCGTCGGCGACAATCACTCCGTCTCTGTTTTGGCTTCAAACTTTCCTGGATGCCAGCCGAATTCCATATACTACACAGATGATTTGACATTTTTTAAACCCTTCGGACCTGCTGATGATCTAGAACCGTGTGATGAAATTGGTATATTCAATTTAAACGATAATACTGTTACACCATATAAATCTCTGAGTGTAAATTGGCCATTGCGCAAGCCACCCGCGCTTTGGATTGTGCCATCAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

406

Amino Acids

46.31

Weight (kDa)

6.54

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 93 - 375 1.1e-56 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
Acc16I TGCGCA 1 cut(s) 1181
Acc36I ACCTGC 2 cut(s) 891, 1090
AccI GTMKAC 2 cut(s) 279, 303
AccII CGCG 1 cut(s) 1193
AciI CCGC 3 cut(s) 351, 560, 1191
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 1 cut(s) 1172
AcsI RAATTY 1 cut(s) 1033
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 3 cut(s) 366, 451, 1197
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 7 cut(s) 98, 167, 652, 761, 893, 1011, 1123
AjnI CCWGG 1 cut(s) 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 6 cut(s) 446, 508, 748, 816, 878, 1000
AlwI GGATC 1 cut(s) 521
Ama87I CYCGRG 2 cut(s) 252, 881
AoxI GGCC 2 cut(s) 604, 1172
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 1182, 1195
AspS9I GGNCC 1 cut(s) 1079
AsuHPI GGTGA 1 cut(s) 619
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 252, 881
AvaII GGWCC 1 cut(s) 1079
BalI TGGCCA 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 645
BccI CCATC 1 cut(s) 1216
BciT130I CCWGG 1 cut(s) 1020
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 6 cut(s) 446, 508, 748, 816, 878, 1000
BfaI CTAG 3 cut(s) 371, 765, 1094
BfmI CTRYAG 1 cut(s) 898
BfuAI ACCTGC 2 cut(s) 891, 1090
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 2 cut(s) 12, 352
BlsI GCNGC 2 cut(s) 13, 353
Bme1390I CCNGG 1 cut(s) 1020
Bme18I GGWCC 1 cut(s) 1079
BmeT110I CYCGRG 2 cut(s) 252, 881
BmgT120I GGNCC 1 cut(s) 1079
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 1 cut(s) 1020
BmsI GCATC 2 cut(s) 397, 1013
BmtI GCTAGC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 645
Bsa29I ATCGAT 1 cut(s) 867
BsaBI GATNNNNATC 1 cut(s) 387
BsaI GGTCTC 2 cut(s) 816, 878
BsaJI CCNNGG 3 cut(s) 75, 291, 361
BsaWI WCCGGW 1 cut(s) 742
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 451, 1197
Bse3DI GCAATG 2 cut(s) 143, 1175
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 1020
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 3 cut(s) 75, 291, 361
BseGI GGATG 1 cut(s) 1028
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 3 cut(s) 366, 451, 1197
BseMI GCAATG 2 cut(s) 143, 1175
BseMII CTCAG 1 cut(s) 1151
Bsh1236I CGCG 1 cut(s) 1193
BshFI GGCC 2 cut(s) 606, 1174
BshVI ATCGAT 1 cut(s) 867
BsiHKCI CYCGRG 2 cut(s) 252, 881
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 366, 451, 1197
BsmAI GTCTC 6 cut(s) 446, 508, 748, 816, 878, 1000
BsmBI CGTCTC 3 cut(s) 446, 508, 1000
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 606, 1174
Bso31I GGTCTC 2 cut(s) 816, 878
BsoBI CYCGRG 2 cut(s) 252, 881
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 244, 526, 1090
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 3 cut(s) 351, 560, 1191
BspANI GGCC 2 cut(s) 606, 1174
BspCNI CTCAG 1 cut(s) 1152
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 1 cut(s) 1193
BspLI GGNNCC 1 cut(s) 776
BspMAI CTGCAG 1 cut(s) 902
BspMI ACCTGC 2 cut(s) 891, 1090
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 521
BspTNI GGTCTC 2 cut(s) 816, 878
BsrDI GCAATG 2 cut(s) 143, 1175
BssECI CCNNGG 3 cut(s) 75, 291, 361
BssMI GATC 3 cut(s) 244, 526, 1090
BssNAI GTATAC 2 cut(s) 280, 304
BssT1I CCWWGG 2 cut(s) 75, 361
Bst1107I GTATAC 2 cut(s) 280, 304
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 5 cut(s) 379, 466, 774, 1101, 1141
Bst6I CTCTTC 1 cut(s) 912
BstC8I GCNNGC 4 cut(s) 134, 372, 1028, 1184
BstDEI CTNAG 1 cut(s) 1160
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 1028
BstFNI CGCG 1 cut(s) 1193
BstHHI GCGC 2 cut(s) 1182, 1195
BstKTI GATC 3 cut(s) 247, 529, 1093
BstMAI GTCTC 6 cut(s) 446, 508, 748, 816, 878, 1000
BstMBI GATC 3 cut(s) 244, 526, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 129, 587, 1192
BstNI CCWGG 1 cut(s) 1020
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 1018
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 1 cut(s) 1193
BstV2I GAAGAC 1 cut(s) 645
BstZ17I GTATAC 2 cut(s) 280, 304
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 2 cut(s) 606, 1174
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 1028
BtsIMutI CAGTG 1 cut(s) 462
BveI ACCTGC 2 cut(s) 891, 1090
Cac8I GCNNGC 4 cut(s) 134, 372, 1028, 1184
CfoI GCGC 2 cut(s) 1182, 1195
Cfr13I GGNCC 1 cut(s) 1079
ClaI ATCGAT 1 cut(s) 867
Csp6I GTAC 1 cut(s) 563
CviAII CATG 6 cut(s) 110, 362, 706, 715, 833, 938
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 1 cut(s) 1160
DpnI GATC 3 cut(s) 246, 528, 1092
DpnII GATC 3 cut(s) 244, 526, 1090
DraI TTTAAA 3 cut(s) 724, 1069, 1128
EaeI YGGCCR 1 cut(s) 1172
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 75, 361
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 2 cut(s) 816, 878
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 1079
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 2 cut(s) 252, 881
EcoRI GAATTC 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 1018
EcoRV GATATC 1 cut(s) 928
EcoT14I CCWWGG 2 cut(s) 75, 361
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 75, 361
Esp3I CGTCTC 3 cut(s) 446, 508, 1000
FaeI CATG 6 cut(s) 113, 365, 709, 718, 836, 941
FaqI GGGAC 1 cut(s) 343
FatI CATG 6 cut(s) 109, 361, 705, 714, 832, 937
FauI CCCGC 1 cut(s) 1198
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 2 cut(s) 279, 303
Fnu4HI GCNGC 2 cut(s) 12, 352
FokI GGATG 1 cut(s) 1035
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 12, 352
FspBI CTAG 3 cut(s) 371, 765, 1094
FspI TGCGCA 1 cut(s) 1181
GlaI GCGC 2 cut(s) 1181, 1194
GluI GCNGC 2 cut(s) 12, 352
HaeIII GGCC 2 cut(s) 606, 1174
HapII CCGG 1 cut(s) 743
HhaI GCGC 2 cut(s) 1182, 1195
Hin1II CATG 6 cut(s) 113, 365, 709, 718, 836, 941
Hin6I GCGC 2 cut(s) 1180, 1193
HinP1I GCGC 2 cut(s) 1180, 1193
HinfI GANTC 4 cut(s) 619, 702, 809, 869
HpaII CCGG 1 cut(s) 743
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 280, 304, 770
Hpy188I TCNGA 7 cut(s) 43, 241, 292, 470, 692, 1079, 1161
Hpy188III TCNNGA 8 cut(s) 83, 252, 542, 635, 794, 881, 883, 1094
Hpy8I GTNNAC 3 cut(s) 280, 304, 770
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 2 cut(s) 834, 1084
HpyCH4III ACNGT 5 cut(s) 379, 466, 774, 1101, 1141
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 4 cut(s) 132, 152, 788, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 587, 1192
HpyF3I CTNAG 1 cut(s) 1160
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 6 cut(s) 113, 365, 709, 718, 836, 941
HspAI GCGC 2 cut(s) 1180, 1193
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 526, 1090
LmnI GCTCC 1 cut(s) 951
LweI GCATC 2 cut(s) 397, 1013
MaeI CTAG 3 cut(s) 371, 765, 1094
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 4 cut(s) 16, 32, 460, 1141
MalI GATC 3 cut(s) 246, 528, 1092
MboI GATC 3 cut(s) 244, 526, 1090
MboII GAAGA 4 cut(s) 155, 650, 929, 964
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 1174
MluCI AATT 7 cut(s) 88, 102, 1033, 1110, 1123, 1168, 1216
MluNI TGGCCA 1 cut(s) 1174
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 596, 670
MnlI CCTC 6 cut(s) 32, 78, 286, 456, 665, 958
Mox20I TGGCCA 1 cut(s) 1174
MscI TGGCCA 1 cut(s) 1174
MseI TTAA 4 cut(s) 723, 1068, 1127, 1219
MslI CAYNNNNRTG 1 cut(s) 43
Msp20I TGGCCA 1 cut(s) 1174
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 1020
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 1020
MvnI CGCG 1 cut(s) 1193
MwoI GCNNNNNNNGC 3 cut(s) 129, 587, 1192
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 244, 526, 1090
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 6 cut(s) 113, 365, 709, 718, 836, 941
NlaIV GGNNCC 1 cut(s) 776
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 460
NsbI TGCGCA 1 cut(s) 1181
NspI RCATGY 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 881
PciI ACATGT 1 cut(s) 937
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 702, 809, 869
PflFI GACNNNGTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 1018
PkrI GCNGC 2 cut(s) 13, 353
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PscI ACATGT 1 cut(s) 937
PsiI TTATAA 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 1018
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 1 cut(s) 1079
PstI CTGCAG 1 cut(s) 902
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 4 cut(s) 723, 1068, 1127, 1219
SatI GCNGC 2 cut(s) 12, 352
Sau3AI GATC 3 cut(s) 244, 526, 1090
Sau96I GGNCC 1 cut(s) 1079
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 1 cut(s) 1020
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 2 cut(s) 397, 1013
SfcI CTRYAG 1 cut(s) 898
Sfr274I CTCGAG 1 cut(s) 881
SinI GGWCC 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 7 cut(s) 88, 102, 1033, 1110, 1123, 1168, 1216
SsiI CCGC 3 cut(s) 351, 560, 1191
SspI AATATT 1 cut(s) 497
SspMI CTAG 3 cut(s) 371, 765, 1094
StyD4I CCNGG 1 cut(s) 1018
StyI CCWWGG 2 cut(s) 75, 361
TaaI ACNGT 5 cut(s) 379, 466, 774, 1101, 1141
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 867, 882
TasI AATT 7 cut(s) 88, 102, 1033, 1110, 1123, 1168, 1216
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 3 cut(s) 702, 809, 869
Tru1I TTAA 4 cut(s) 723, 1068, 1127, 1219
Tru9I TTAA 4 cut(s) 723, 1068, 1127, 1219
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 6 cut(s) 507, 583, 656, 694, 821, 1122
TspGWI ACGGA 4 cut(s) 104, 186, 217, 982
TspRI CASTG 1 cut(s) 469
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 1 cut(s) 1033
XbaI TCTAGA 1 cut(s) 1093
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 2 cut(s) 116, 1194
XhoI CTCGAG 1 cut(s) 881
XmiI GTMKAC 2 cut(s) 279, 303
XspI CTAG 3 cut(s) 371, 765, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.