Rroxscaffold_7G00191740

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005358
Physical Location & Seq
Reverse (-)
32456546 .. 32459357
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191740.1

Sequence Viewer

Length: 516 bp
ATGGGGAGGATCCGGGGCAGGCCAAGCTCCGAGTCGGGCTTAATTTACCGGTTAATATCACGCTACACTCTTTCTCAACCTCTTAAGCTTCTTTATAAAAGCTTTAATCTTTTGCACCATAGGCAGTCTAGTGGATCTCCAAGTCTCTTGCAACTTTATGTGGGTCCTCATTCAATAAATGGAAATGCGGTTGTTTTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTGGAGAGATTCAATATTGATGTCCGATTTGGAAATCAATCATATGCTGAGTTTAGAGATACTGGATTGAAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGTCCATGCCATACCAGAACCTTTTGCTCCTGGTGTAAACTATGCTCGGTATCTTAAGGAACTATCGGAGAAGGATCGTCAAGCATTTTTCTGCCACTTCTACAATATATACTTCGCTCATTCAGCTGGTGGACGAATGATTGGGAAAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

171

Amino Acids

19.8

Weight (kDa)

9.65

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AciI CCGC 1 cut(s) 188
AclWI GGATC 4 cut(s) 4, 17, 142, 441
AflII CTTAAG 2 cut(s) 83, 413
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 5 cut(s) 174, 199, 256, 313, 352
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 4 cut(s) 27, 88, 102, 485
AluI AGCT 4 cut(s) 27, 88, 102, 485
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 4 cut(s) 4, 17, 142, 441
AoxI GGCC 1 cut(s) 20
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 164
BamHI GGATCC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 129
BfrI CTTAAG 2 cut(s) 83, 413
Bme1390I CCNGG 2 cut(s) 14, 390
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 11, 165
BmrFI CCNGG 2 cut(s) 14, 390
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 310
BshFI GGCC 1 cut(s) 22
BshTI ACCGGT 1 cut(s) 48
BsiSI CCGG 2 cut(s) 13, 49
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 9, 134, 433
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 11, 165
BspPI GGATC 4 cut(s) 4, 17, 142, 441
BspTI CTTAAG 2 cut(s) 83, 413
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 9, 134, 433
Bst2UI CCWGG 1 cut(s) 390
BstAFI CTTAAG 2 cut(s) 83, 413
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 291
BstKTI GATC 3 cut(s) 12, 137, 436
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 9, 134, 433
BstMWI GCNNNNNNNGC 3 cut(s) 24, 121, 482
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 12, 388
BstX2I RGATCY 2 cut(s) 9, 134
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 2 cut(s) 9, 134
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 164
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 2 cut(s) 217, 365
CviJI RGCY 6 cut(s) 22, 27, 39, 88, 102, 485
CviKI_1 RGCY 6 cut(s) 22, 27, 39, 88, 102, 485
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 11, 136, 435
DpnII GATC 3 cut(s) 9, 134, 433
Eco47I GGWCC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 388
FaeI CATG 2 cut(s) 220, 368
FatI CATG 2 cut(s) 216, 364
FauNDI CATATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 13, 49
Hin1II CATG 2 cut(s) 220, 368
HindIII AAGCTT 2 cut(s) 86, 100
HinfI GANTC 2 cut(s) 32, 252
HpaII CCGG 2 cut(s) 13, 49
Hpy166II GTNNAC 2 cut(s) 397, 491
Hpy188I TCNGA 4 cut(s) 31, 269, 322, 427
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 397, 491
HpyAV CCTTC 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 115, 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 121, 482
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 220, 368
Kzo9I GATC 3 cut(s) 9, 134, 433
LmnI GCTCC 3 cut(s) 32, 355, 391
LpnPI CCDG 8 cut(s) 4, 26, 62, 291, 375, 387, 402, 471
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 11, 136, 435
MboI GATC 3 cut(s) 9, 134, 433
MflI RGATCY 2 cut(s) 9, 134
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 90, 177, 235
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 5 cut(s) 41, 53, 84, 105, 414
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 2 cut(s) 83, 413
MspI CCGG 2 cut(s) 13, 49
MspR9I CCNGG 2 cut(s) 14, 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 24, 121, 482
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 286
NdeII GATC 3 cut(s) 9, 134, 433
NlaIII CATG 2 cut(s) 220, 368
NlaIV GGNNCC 2 cut(s) 11, 165
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 48
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 164
PsiI TTATAA 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 11, 165
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 2 cut(s) 9, 134
PvuII CAGCTG 1 cut(s) 485
SaqAI TTAA 5 cut(s) 41, 53, 84, 105, 414
Sau3AI GATC 3 cut(s) 9, 134, 433
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 14, 390
SetI ASST 9 cut(s) 29, 82, 90, 104, 246, 320, 382, 487, 513
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 83, 239, 413
SmoI CTYRAG 3 cut(s) 83, 239, 413
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 188
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 12, 388
TasI AATT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 5 cut(s) 41, 53, 84, 105, 414
Tru9I TTAA 5 cut(s) 41, 53, 84, 105, 414
Vha464I CTTAAG 2 cut(s) 83, 413
VpaK11BI GGWCC 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.