FvH4_1g03240

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005358
Physical Location & Seq
Forward (+)
1804102 .. 1806804
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03240.t1

Sequence Viewer

Length: 846 bp
ATGGCTTCTTTAACCCCAATATCCCAATCCCAGTCCCTCTTCAACAAACCCCAGCTCAAGTTCAAACTACCGTCGTCAGATTTCTTGCCCAAAAGTTTCACGGTCTCGTTTTCCAAGATGAACCCCACTATGCCCATGAAGTCCGCCGCCGGAGTGGTGTCGGCGACGACGGCGGAGATGCCGCCGAAGAAGAGGTACCCGGGAGAGGGGAAGGGGTTTGTGGAGGAGATGAGATTTGTGGCGATGAAGCTGCACACGAGAGACCAGGCTAAGGAGGGTGAGAAGGAGGTGAAGGAGCCTCAGGAGAAGGCGGTGGCTAAGTGGGACCCAACGGTGGAGGGGTACTTGAAGTTTCTGGTGGATAGCAAGCTGGTGTATGATACGCTTGAAGGGATTGTTGACAGGGCTCCCTTCCCTTCTTATGCTGAGTTTAGAGATACTGGATTGGAAAGGTCTGAAAAGTTGGCCAAAGATTTGGAGTGGTTCAAGGAGCAAGGTCATGCTATACCAGAACCTTCTGCTCCTGGTATCACCTATGCTGAATATCTCAAGGAATTGTCAGAGAAGGATCCTCAAGCATTTCTCTGCCACTTCTACAATATATACTTTGCTCATTCAGCCGGTGGTCGAATGATTGGGAAAAAGGTGGCTGAAATGATCCTCGACAAGAAAGATTTAGAATTCTATAAATGGGATGGTGAACTTTCCCAATTGTTGCAGAACGTAAGGGAGAAATTGAACAAAGTTGCGGAGAGCTGGACGAGGGAGGAAAAGAACCATTGCTTGGAAGAAACTGAGAAATCATTCAAACATTCAGGAGAAATTCTCCGTCTAATATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

6.63

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 109 - 275 3.8e-13 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 784
AciI CCGC 6 cut(s) 144, 147, 173, 182, 311, 749
AclWI GGATC 3 cut(s) 563, 576, 652
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 680, 822
AfaI GTAC 2 cut(s) 197, 344
AfiI CCNNNNNNNGG 5 cut(s) 205, 206, 271, 334, 784
AgsI TTSAA 7 cut(s) 43, 64, 349, 389, 487, 739, 808
AjnI CCWGG 2 cut(s) 264, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 4 cut(s) 55, 250, 370, 756
AluI AGCT 4 cut(s) 55, 250, 370, 756
Alw26I GTCTC 2 cut(s) 109, 255
AlwI GGATC 3 cut(s) 563, 576, 652
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 680, 822
Asp700I GAANNNNTTC 1 cut(s) 803
Asp718I GGTACC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 2 cut(s) 200, 201
AsuHPI GGTGA 4 cut(s) 290, 301, 523, 710
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BauI CACGAG 1 cut(s) 256
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 689
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 2 cut(s) 266, 525
BcnI CCSGG 2 cut(s) 200, 201
BcoDI GTCTC 2 cut(s) 109, 255
BisI GCNGC 3 cut(s) 147, 182, 251
BlsI GCNGC 3 cut(s) 148, 183, 252
Bme1390I CCNGG 4 cut(s) 200, 201, 266, 525
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 6 cut(s) 197, 297, 326, 327, 408, 570
BmrFI CCNGG 4 cut(s) 200, 201, 266, 525
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 810, 842
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 3 cut(s) 41, 533, 558
BpuMI CCSGG 2 cut(s) 200, 201
BsaI GGTCTC 2 cut(s) 109, 255
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 206, 271, 334, 784
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 2 cut(s) 31, 445
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 778
BseBI CCWGG 2 cut(s) 266, 525
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 5 cut(s) 205, 206, 271, 334, 784
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 3 cut(s) 314, 417, 786
BseNI ACTGG 2 cut(s) 31, 445
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 236
BshFI GGCC 1 cut(s) 467
BshNI GGYRCC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 3 cut(s) 150, 200, 621
BslFI GGGAC 2 cut(s) 19, 338
BslI CCNNNNNNNGG 5 cut(s) 205, 206, 271, 334, 784
BsmAI GTCTC 2 cut(s) 109, 255
BsmFI GGGAC 2 cut(s) 19, 338
BsnI GGCC 1 cut(s) 467
Bso31I GGTCTC 2 cut(s) 109, 255
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 2 cut(s) 568, 657
BspACI CCGC 6 cut(s) 144, 147, 173, 182, 311, 749
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 3 cut(s) 313, 418, 787
BspHI TCATGA 1 cut(s) 842
BspLI GGNNCC 6 cut(s) 197, 297, 326, 327, 408, 570
BspPI GGATC 3 cut(s) 563, 576, 652
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 2 cut(s) 109, 255
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 620
BsrI ACTGG 2 cut(s) 31, 445
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 568, 657
BssSI CACGAG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 266, 525
Bst4CI ACNGT 3 cut(s) 72, 103, 334
Bst6I CTCTTC 2 cut(s) 44, 185
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 5 cut(s) 270, 300, 318, 426, 795
BstF5I GGATG 1 cut(s) 700
BstKTI GATC 2 cut(s) 571, 660
BstMAI GTCTC 2 cut(s) 109, 255
BstMBI GATC 2 cut(s) 568, 657
BstMWI GCNNNNNNNGC 2 cut(s) 170, 617
BstNI CCWGG 2 cut(s) 266, 525
BstSCI CCNGG 4 cut(s) 198, 199, 264, 523
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 700
Cac8I GCNNGC 1 cut(s) 368
CciI TCATGA 1 cut(s) 842
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 325
Cfr9I CCCGGG 1 cut(s) 199
Csp6I GTAC 2 cut(s) 196, 343
CviAII CATG 3 cut(s) 136, 500, 843
CviQI GTAC 2 cut(s) 196, 343
DdeI CTNAG 5 cut(s) 270, 300, 318, 426, 795
DpnI GATC 2 cut(s) 570, 659
DpnII GATC 2 cut(s) 568, 657
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 44, 185
EarI CTCTTC 2 cut(s) 44, 185
EciI GGCGGA 2 cut(s) 133, 188
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 2 cut(s) 109, 255
Eco47I GGWCC 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 264, 523
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 3 cut(s) 139, 503, 846
FaqI GGGAC 2 cut(s) 19, 338
FatI CATG 3 cut(s) 135, 499, 842
Fnu4HI GCNGC 3 cut(s) 147, 182, 251
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 147, 182, 251
GluI GCNGC 3 cut(s) 147, 182, 251
GsaI CCCAGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 467
HapII CCGG 3 cut(s) 150, 200, 621
Hin1II CATG 3 cut(s) 139, 503, 846
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HpaII CCGG 3 cut(s) 150, 200, 621
HphI GGTGA 4 cut(s) 290, 301, 523, 710
Hpy166II GTNNAC 2 cut(s) 400, 701
Hpy188I TCNGA 3 cut(s) 79, 457, 562
Hpy188III TCNNGA 3 cut(s) 302, 816, 843
Hpy8I GTNNAC 2 cut(s) 400, 701
Hpy99I CGWCG 3 cut(s) 76, 169, 172
HpyAV CCTTC 9 cut(s) 205, 277, 286, 301, 383, 421, 426, 525, 559
HpyCH4III ACNGT 3 cut(s) 72, 103, 334
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 2 cut(s) 253, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 617
HpyF3I CTNAG 5 cut(s) 270, 300, 318, 426, 795
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 3 cut(s) 139, 503, 846
KflI GGGWCCC 1 cut(s) 325
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 568, 657
LmnI GCTCC 4 cut(s) 295, 412, 490, 526
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 168
MaeII ACGT 1 cut(s) 723
MalI GATC 2 cut(s) 570, 659
MboI GATC 2 cut(s) 568, 657
MboII GAAGA 4 cut(s) 31, 199, 202, 800
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 5 cut(s) 554, 680, 710, 734, 822
MluNI TGGCCA 1 cut(s) 467
Mox20I TGGCCA 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 803
MscI TGGCCA 1 cut(s) 467
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 3 cut(s) 150, 200, 621
MspR9I CCNGG 4 cut(s) 200, 201, 266, 525
MunI CAATTG 1 cut(s) 710
MvaI CCWGG 2 cut(s) 266, 525
MwoI GCNNNNNNNGC 2 cut(s) 170, 617
NciI CCSGG 2 cut(s) 200, 201
NdeII GATC 2 cut(s) 568, 657
NlaIII CATG 3 cut(s) 139, 503, 846
NlaIV GGNNCC 6 cut(s) 197, 297, 326, 327, 408, 570
PagI TCATGA 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 803
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 3 cut(s) 148, 183, 252
PpuMI RGGWCCY 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 264, 523
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 264, 523
PspN4I GGNNCC 6 cut(s) 197, 297, 326, 327, 408, 570
PspPI GGNCC 1 cut(s) 325
PspPPI RGGWCCY 1 cut(s) 325
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 197, 344
RsaNI GTAC 2 cut(s) 196, 343
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 147, 182, 251
Sau3AI GATC 2 cut(s) 568, 657
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 4 cut(s) 200, 201, 266, 525
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 1 cut(s) 168
SinI GGWCC 1 cut(s) 325
SmaI CCCGGG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 56, 548, 573
SmoI CTYRAG 3 cut(s) 56, 548, 573
Sse9I AATT 5 cut(s) 554, 680, 710, 734, 822
SsiI CCGC 6 cut(s) 144, 147, 173, 182, 311, 749
SspI AATATT 1 cut(s) 837
StyD4I CCNGG 4 cut(s) 198, 199, 264, 523
TaaI ACNGT 3 cut(s) 72, 103, 334
TaiI ACGT 1 cut(s) 726
TaqI TCGA 2 cut(s) 628, 663
TasI AATT 5 cut(s) 554, 680, 710, 734, 822
TauI GCSGC 2 cut(s) 149, 184
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 134, 152, 260
TspGWI ACGGA 1 cut(s) 818
TspMI CCCGGG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 680, 822
XmaI CCCGGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.